CX299948

Overview
NameCX299948
Unique NameCX299948
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length249
Libraries
Library NameType
SaltLeaf1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX299948 vs. ExPASy Swiss-Prot
Match: RL2_THETN (50S ribosomal protein L2 OS=Thermoanaerobacter tengcongensis GN=rplB PE=3 SV=1)

HSP 1 Score: 101.293 bits (251), Expect = 1.596e-21
Identity = 47/81 (58.02%), Postives = 59/81 (72.84%), Query Frame = 2
Query:    2 HNIEITLGKGGQLARAAGAVAKLIAKEGKSATLKLPSGEVRLISKNCSATVGQVGNVGANQKSLGRAGSKCWLGKRPVVRG 244
            HNIE+  GKGGQL RAAGA A+L+AKEG    +++PSGE+RLI+ NC AT+GQV N+      +G+AG   WLG RP VRG
Sbjct:  142 HNIELIPGKGGQLVRAAGAAAQLMAKEGDYVHIRMPSGEIRLINANCRATIGQVSNIDHENVKIGKAGRSRWLGIRPTVRG 222          
BLAST of CX299948 vs. ExPASy Swiss-Prot
Match: RL2_SOLUE (50S ribosomal protein L2 OS=Solibacter usitatus (strain Ellin6076) GN=rplB PE=3 SV=1)

HSP 1 Score: 101.293 bits (251), Expect = 1.596e-21
Identity = 49/82 (59.76%), Postives = 62/82 (75.61%), Query Frame = 2
Query:    2 HNIEITLGKGGQLARAAGAVAKLIAKEGKSATLKLPSGEVRLISKNCSATVGQVGNVGANQKSLGRAGSKCWLGKRPVVRGV 247
            HNIE+  GKGGQ+AR+AG+ A+L+++EG  A LKLPSGE+R ++  C ATVGQVGNV     SLG+AG K W+GK P  RGV
Sbjct:  142 HNIELKPGKGGQMARSAGSQAQLVSREGGLALLKLPSGEIRRVAVECMATVGQVGNVDHENVSLGKAGRKRWMGKTPHNRGV 223          
BLAST of CX299948 vs. ExPASy Swiss-Prot
Match: RL2_LAWIP (50S ribosomal protein L2 OS=Lawsonia intracellularis (strain PHE/MN1-00) GN=rplB PE=3 SV=1)

HSP 1 Score: 101.293 bits (251), Expect = 1.596e-21
Identity = 49/82 (59.76%), Postives = 63/82 (76.83%), Query Frame = 2
Query:    2 HNIEITLGKGGQLARAAGAVAKLIAKEGKSATLKLPSGEVRLISKNCSATVGQVGNVGANQKSLGRAGSKCWLGKRPVVRGV 247
            HNIE+  G+GGQL R+AGA A+L+A+EGK A L++PSGEVR +  + +ATVGQVGN+     SLG+AG   WLG+RP VRGV
Sbjct:  142 HNIELNPGRGGQLCRSAGAYAQLVAREGKYALLRMPSGEVRKVLASGAATVGQVGNIHHENISLGKAGRNRWLGRRPKVRGV 223          
BLAST of CX299948 vs. ExPASy Swiss-Prot
Match: RK2_NEPOL (50S ribosomal protein L2, chloroplastic OS=Nephroselmis olivacea GN=rpl2 PE=3 SV=1)

HSP 1 Score: 100.908 bits (250), Expect = 2.084e-21
Identity = 50/81 (61.73%), Postives = 63/81 (77.78%), Query Frame = 2
Query:    2 HNIEITLGKGGQLARAAGAVAKLIAKEGKSATLKLPSGEVRLISKNCSATVGQVGNVGANQKSLGRAGSKCWLGKRPVVRG 244
            HNIE+    GGQL RAAGAVA+L+AKEG   TL++PSGEVRL++K+C ATVGQVG+V +   +LG+AG   WL +RP VRG
Sbjct:  142 HNIELRPYNGGQLVRAAGAVAQLVAKEGGFGTLRMPSGEVRLVAKDCWATVGQVGHVESINLTLGKAGRSRWLDRRPRVRG 222          
BLAST of CX299948 vs. ExPASy Swiss-Prot
Match: RL2_DICTD (50S ribosomal protein L2 OS=Dictyoglomus turgidum (strain Z-1310 / DSM 6724) GN=rplB PE=3 SV=1)

HSP 1 Score: 100.523 bits (249), Expect = 2.722e-21
Identity = 47/81 (58.02%), Postives = 59/81 (72.84%), Query Frame = 2
Query:    2 HNIEITLGKGGQLARAAGAVAKLIAKEGKSATLKLPSGEVRLISKNCSATVGQVGNVGANQKSLGRAGSKCWLGKRPVVRG 244
            HN+E+  G+GGQL RAAG  A+++ KEGK A ++LPSGE+RL   NC AT+GQV NV     SLG+AG   WLG+RP VRG
Sbjct:  142 HNLELYPGRGGQLVRAAGTAAQILGKEGKWAYVRLPSGEIRLFDLNCRATIGQVSNVDHQNVSLGKAGRSRWLGRRPHVRG 222          
BLAST of CX299948 vs. ExPASy Swiss-Prot
Match: RL2_DICT6 (50S ribosomal protein L2 OS=Dictyoglomus thermophilum (strain ATCC 35947 / DSM 3960 / H-6-12) GN=rplB PE=3 SV=1)

HSP 1 Score: 100.523 bits (249), Expect = 2.722e-21
Identity = 47/81 (58.02%), Postives = 59/81 (72.84%), Query Frame = 2
Query:    2 HNIEITLGKGGQLARAAGAVAKLIAKEGKSATLKLPSGEVRLISKNCSATVGQVGNVGANQKSLGRAGSKCWLGKRPVVRG 244
            HN+E+  G+GGQL RAAG  A+++ KEGK A ++LPSGE+RL   NC AT+GQV NV     SLG+AG   WLG+RP VRG
Sbjct:  142 HNLELYPGRGGQLVRAAGTAAQILGKEGKWAYVRLPSGEIRLFDLNCRATIGQVSNVDHQNVSLGKAGRSRWLGRRPHVRG 222          
BLAST of CX299948 vs. ExPASy Swiss-Prot
Match: RK2_CYACA (50S ribosomal protein L2, chloroplastic OS=Cyanidium caldarium GN=rpl2 PE=3 SV=1)

HSP 1 Score: 100.523 bits (249), Expect = 2.722e-21
Identity = 48/81 (59.26%), Postives = 58/81 (71.60%), Query Frame = 2
Query:    2 HNIEITLGKGGQLARAAGAVAKLIAKEGKSATLKLPSGEVRLISKNCSATVGQVGNVGANQKSLGRAGSKCWLGKRPVVRG 244
            HNIE+  GKGGQ+ARAAG  AKLIAK     T+KLPSGE+RL    C AT+G+VGN+  N + +G+AG   WLG RP VRG
Sbjct:  143 HNIELIHGKGGQVARAAGTSAKLIAKSQDYVTIKLPSGEIRLFRGECYATIGKVGNIDHNNEKIGKAGRNRWLGIRPTVRG 223          
BLAST of CX299948 vs. ExPASy Swiss-Prot
Match: RL2_BORRA (50S ribosomal protein L2 OS=Borrelia recurrentis (strain A1) GN=rplB PE=3 SV=1)

HSP 1 Score: 100.138 bits (248), Expect = 3.555e-21
Identity = 47/82 (57.32%), Postives = 59/82 (71.95%), Query Frame = 2
Query:    2 HNIEITLGKGGQLARAAGAVAKLIAKEGKSATLKLPSGEVRLISKNCSATVGQVGNVGANQKSLGRAGSKCWLGKRPVVRGV 247
            HNIE+ +GKGGQL R AG  A +IA +G   T+KLPSGE+R+I K C AT+G+VGN      S+G+AG   WLG+RP VRGV
Sbjct:  144 HNIELNIGKGGQLVRGAGGYAMIIASDGDYVTVKLPSGEMRMIFKKCIATLGEVGNEDYMNVSIGKAGKSRWLGRRPKVRGV 225          
BLAST of CX299948 vs. ExPASy Swiss-Prot
Match: RL2_BORDL (50S ribosomal protein L2 OS=Borrelia duttonii (strain Ly) GN=rplB PE=3 SV=1)

HSP 1 Score: 100.138 bits (248), Expect = 3.555e-21
Identity = 47/82 (57.32%), Postives = 59/82 (71.95%), Query Frame = 2
Query:    2 HNIEITLGKGGQLARAAGAVAKLIAKEGKSATLKLPSGEVRLISKNCSATVGQVGNVGANQKSLGRAGSKCWLGKRPVVRGV 247
            HNIE+ +GKGGQL R AG  A +IA +G   T+KLPSGE+R+I K C AT+G+VGN      S+G+AG   WLG+RP VRGV
Sbjct:  144 HNIELNIGKGGQLVRGAGGYAMIIASDGDYVTVKLPSGEMRMIFKKCIATLGEVGNEDYMNVSIGKAGKSRWLGRRPKVRGV 225          
BLAST of CX299948 vs. ExPASy Swiss-Prot
Match: RK2_SCEOB (50S ribosomal protein L2, chloroplastic OS=Scenedesmus obliquus GN=rpl2 PE=3 SV=1)

HSP 1 Score: 100.138 bits (248), Expect = 3.555e-21
Identity = 48/81 (59.26%), Postives = 60/81 (74.07%), Query Frame = 2
Query:    2 HNIEITLGKGGQLARAAGAVAKLIAKEGKSATLKLPSGEVRLISKNCSATVGQVGNVGANQKSLGRAGSKCWLGKRPVVRG 244
            HN+E   G GGQLAR+AGA+  ++AKEG   T++LPS E+RLISKN  AT+GQVGN+ A    +G+AG   WLGKRP VRG
Sbjct:  142 HNVEFQPGSGGQLARSAGALLDILAKEGNFVTVRLPSKEIRLISKNSWATIGQVGNLEAYSIRIGKAGRNRWLGKRPTVRG 222          
The following BLAST results are available for this feature:
BLAST of CX299948 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RL2_THETN1.596e-2158.0250S ribosomal protein L2 OS=Thermoanaerobacter ten... [more]
RL2_SOLUE1.596e-2159.7650S ribosomal protein L2 OS=Solibacter usitatus (s... [more]
RL2_LAWIP1.596e-2159.7650S ribosomal protein L2 OS=Lawsonia intracellular... [more]
RK2_NEPOL2.084e-2161.7350S ribosomal protein L2, chloroplastic OS=Nephros... [more]
RL2_DICTD2.722e-2158.0250S ribosomal protein L2 OS=Dictyoglomus turgidum ... [more]
RL2_DICT62.722e-2158.0250S ribosomal protein L2 OS=Dictyoglomus thermophi... [more]
RK2_CYACA2.722e-2159.2650S ribosomal protein L2, chloroplastic OS=Cyanidi... [more]
RL2_BORRA3.555e-2157.3250S ribosomal protein L2 OS=Borrelia recurrentis (... [more]
RL2_BORDL3.555e-2157.3250S ribosomal protein L2 OS=Borrelia duttonii (str... [more]
RK2_SCEOB3.555e-2159.2650S ribosomal protein L2, chloroplastic OS=Scenede... [more]

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Properties
Property NameValue
Genbank descriptionC07004D01SK SaltLeaf1 Citrus clementina cDNA clone C07004D01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX299948 ID=CX299948; Name=CX299948; organism=Citrus clementina; type=EST; length=249bp
ACATAACATAGAAATCACACTTGGAAAGGGTGGACAATTAGCTAGAGCAG
CGGGTGCTGTAGCGAAACTGATTGCAAAAGAGGGGAAATCGGCCACATTA
AAATTACCTTCTGGGGAGGTCCGTTTGATATCCAAAAACTGCTCAGCAAC
AGTCGGACAAGTGGGGAATGTTGGGGCGAACCAGAAAAGTTTGGGTAGAG
CCGGATCTAAATGTTGGCTAGGGAAGCGTCCTGTAGTAAGAGGAGTAGT
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