CX299948

Overview
NameCX299948
Unique NameCX299948
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length249
Libraries
Library NameType
SaltLeaf1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX299948 vs. ExPASy Swiss-Prot
Match: RL2_ROSCS (50S ribosomal protein L2 OS=Roseiflexus castenholzii (strain DSM 13941 / HLO8) GN=rplB PE=3 SV=1)

HSP 1 Score: 99.7525 bits (247), Expect = 4.643e-21
Identity = 47/81 (58.02%), Postives = 60/81 (74.07%), Query Frame = 2
Query:    2 HNIEITLGKGGQLARAAGAVAKLIAKEGKSATLKLPSGEVRLISKNCSATVGQVGNVGANQKSLGRAGSKCWLGKRPVVRG 244
            HNIE+  G+GG + R+AGA A+L+AKEG  ATL++PSGEVR +   C AT+GQVGN+      LG+AG K WLG+RP VRG
Sbjct:  142 HNIELEKGRGGVMVRSAGAAAQLMAKEGNYATLRMPSGEVRRVFIECMATIGQVGNLDHQNVRLGKAGRKRWLGRRPEVRG 222          
BLAST of CX299948 vs. ExPASy Swiss-Prot
Match: RL2_HELMI (50S ribosomal protein L2 OS=Heliobacterium modesticaldum (strain ATCC 51547 / Ice1) GN=rplB PE=3 SV=1)

HSP 1 Score: 99.7525 bits (247), Expect = 4.643e-21
Identity = 48/82 (58.54%), Postives = 62/82 (75.61%), Query Frame = 2
Query:    2 HNIEITLGKGGQLARAAGAVAKLIAKEGKSATLKLPSGEVRLISKNCSATVGQVGNVGANQKSLGRAGSKCWLGKRPVVRGV 247
            H IE+  GKGGQL R+AGA A+L+AKEG+ ATL+LPSGE+R +   C AT+GQ+GN+     ++G+AG K WLG RP VRGV
Sbjct:  142 HCIEMRPGKGGQLVRSAGAAAQLMAKEGEHATLRLPSGEMRKVLAECRATIGQMGNLEHENITIGKAGRKRWLGIRPTVRGV 223          
BLAST of CX299948 vs. ExPASy Swiss-Prot
Match: RL2_FINM2 (50S ribosomal protein L2 OS=Finegoldia magna (strain ATCC 29328) GN=rplB PE=3 SV=1)

HSP 1 Score: 99.7525 bits (247), Expect = 4.643e-21
Identity = 50/81 (61.73%), Postives = 60/81 (74.07%), Query Frame = 2
Query:    2 HNIEITLGKGGQLARAAGAVAKLIAKEGKSATLKLPSGEVRLISKNCSATVGQVGNVGANQKSLGRAGSKCWLGKRPVVRG 244
            HNIE+ +GKG QL R AGA A+L+AKEGK A L+LPSGE RLI  +C ATVGQVGN+     ++G+AG    LGKRP VRG
Sbjct:  142 HNIEMKVGKGAQLVRTAGAEAQLMAKEGKFAQLRLPSGEFRLIHLDCKATVGQVGNISHELVTIGKAGRNRHLGKRPYVRG 222          
BLAST of CX299948 vs. ExPASy Swiss-Prot
Match: RL2_DESDG (50S ribosomal protein L2 OS=Desulfovibrio desulfuricans (strain G20) GN=rplB PE=3 SV=1)

HSP 1 Score: 99.7525 bits (247), Expect = 4.643e-21
Identity = 48/82 (58.54%), Postives = 59/82 (71.95%), Query Frame = 2
Query:    2 HNIEITLGKGGQLARAAGAVAKLIAKEGKSATLKLPSGEVRLISKNCSATVGQVGNVGANQKSLGRAGSKCWLGKRPVVRGV 247
            HNIE+  GKGGQ  RAAG  A+L+AKEG  A L++PSGEVR +   C AT+GQVGN+   + S G+AG   WLG+RP VRGV
Sbjct:  142 HNIELYPGKGGQFCRAAGTYAQLVAKEGNYALLRMPSGEVRKVLVTCCATIGQVGNLDHEKISYGKAGRSRWLGRRPKVRGV 223          
BLAST of CX299948 vs. ExPASy Swiss-Prot
Match: RK2_GUITH (50S ribosomal protein L2, chloroplastic OS=Guillardia theta GN=rpl2 PE=3 SV=1)

HSP 1 Score: 99.7525 bits (247), Expect = 4.643e-21
Identity = 45/82 (54.88%), Postives = 61/82 (74.39%), Query Frame = 2
Query:    2 HNIEITLGKGGQLARAAGAVAKLIAKEGKSATLKLPSGEVRLISKNCSATVGQVGNVGANQKSLGRAGSKCWLGKRPVVRGV 247
            HN+E+  G+GGQ+ R+AG  A+++AK+G+  T+K+PS EVR+I KNC AT+G+VGN       LG+AG K WLG RP VRGV
Sbjct:  142 HNVELIPGRGGQIVRSAGTSAQVVAKDGQVVTIKMPSNEVRMIYKNCYATIGEVGNADIKNIRLGKAGRKRWLGIRPSVRGV 223          
BLAST of CX299948 vs. ExPASy Swiss-Prot
Match: RL2_CLOD6 (50S ribosomal protein L2 OS=Clostridium difficile (strain 630) GN=rplB PE=3 SV=1)

HSP 1 Score: 99.3673 bits (246), Expect = 6.064e-21
Identity = 48/81 (59.26%), Postives = 61/81 (75.31%), Query Frame = 2
Query:    2 HNIEITLGKGGQLARAAGAVAKLIAKEGKSATLKLPSGEVRLISKNCSATVGQVGNVGANQKSLGRAGSKCWLGKRPVVRG 244
            HNIE+  GKG QL R+AG  A+L+AKEGK+A L+LPSGE+RL+S NC AT+GQVGN+      +G+AG K  +G RP VRG
Sbjct:  142 HNIELKPGKGAQLVRSAGVSAQLMAKEGKNALLRLPSGEMRLVSINCKATIGQVGNIEHGNVVIGKAGRKRHMGIRPTVRG 222          
BLAST of CX299948 vs. ExPASy Swiss-Prot
Match: RL2_ROSS1 (50S ribosomal protein L2 OS=Roseiflexus sp. (strain RS-1) GN=rplB PE=3 SV=1)

HSP 1 Score: 98.9821 bits (245), Expect = 7.920e-21
Identity = 46/81 (56.79%), Postives = 60/81 (74.07%), Query Frame = 2
Query:    2 HNIEITLGKGGQLARAAGAVAKLIAKEGKSATLKLPSGEVRLISKNCSATVGQVGNVGANQKSLGRAGSKCWLGKRPVVRG 244
            HN+E+  G+GG + R+AGA A+L+AKEG  ATL++PSGEVR +   C AT+GQVGN+      LG+AG K WLG+RP VRG
Sbjct:  142 HNVELEKGRGGVMVRSAGAAAQLMAKEGNYATLRMPSGEVRRVFIECMATIGQVGNLDHQNIRLGKAGRKRWLGRRPEVRG 222          
BLAST of CX299948 vs. ExPASy Swiss-Prot
Match: RL2_DESHY (50S ribosomal protein L2 OS=Desulfitobacterium hafniense (strain Y51) GN=rplB PE=3 SV=1)

HSP 1 Score: 98.9821 bits (245), Expect = 7.920e-21
Identity = 47/81 (58.02%), Postives = 61/81 (75.31%), Query Frame = 2
Query:    2 HNIEITLGKGGQLARAAGAVAKLIAKEGKSATLKLPSGEVRLISKNCSATVGQVGNVGANQKSLGRAGSKCWLGKRPVVRG 244
            HNIE+  GKG QL R+AG  A+L+AKEGK ATL+LPSGE+R++  +C AT+GQVGN+     ++G+AG   WLG RP VRG
Sbjct:  142 HNIEMKPGKGAQLVRSAGGSAQLMAKEGKYATLRLPSGEMRMVHIDCRATIGQVGNLEHENINIGKAGRSRWLGIRPTVRG 222          
BLAST of CX299948 vs. ExPASy Swiss-Prot
Match: RL2_DESHD (50S ribosomal protein L2 OS=Desulfitobacterium hafniense (strain DCB-2 / DSM 10664) GN=rplB PE=3 SV=1)

HSP 1 Score: 98.9821 bits (245), Expect = 7.920e-21
Identity = 47/81 (58.02%), Postives = 61/81 (75.31%), Query Frame = 2
Query:    2 HNIEITLGKGGQLARAAGAVAKLIAKEGKSATLKLPSGEVRLISKNCSATVGQVGNVGANQKSLGRAGSKCWLGKRPVVRG 244
            HNIE+  GKG QL R+AG  A+L+AKEGK ATL+LPSGE+R++  +C AT+GQVGN+     ++G+AG   WLG RP VRG
Sbjct:  142 HNIEMKPGKGAQLVRSAGGSAQLMAKEGKYATLRLPSGEMRMVHIDCRATIGQVGNLEHENINIGKAGRSRWLGIRPTVRG 222          
BLAST of CX299948 vs. ExPASy Swiss-Prot
Match: RL2_TRIEI (50S ribosomal protein L2 OS=Trichodesmium erythraeum (strain IMS101) GN=rplB PE=3 SV=1)

HSP 1 Score: 98.5969 bits (244), Expect = 1.034e-20
Identity = 45/81 (55.56%), Postives = 60/81 (74.07%), Query Frame = 2
Query:    2 HNIEITLGKGGQLARAAGAVAKLIAKEGKSATLKLPSGEVRLISKNCSATVGQVGNVGANQKSLGRAGSKCWLGKRPVVRG 244
            HN+E+  GKGGQ+ R+AGAVA+++AKE +  T+KLPSGE R +  +C AT+GQ+GN+     SLG+AG   W GKRP VRG
Sbjct:  142 HNVELVPGKGGQMVRSAGAVAQVVAKEDQYVTIKLPSGERRKVRASCYATLGQIGNIEHRNISLGKAGRNRWKGKRPTVRG 222          
The following BLAST results are available for this feature:
BLAST of CX299948 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RL2_ROSCS4.643e-2158.0250S ribosomal protein L2 OS=Roseiflexus castenholz... [more]
RL2_HELMI4.643e-2158.5450S ribosomal protein L2 OS=Heliobacterium modesti... [more]
RL2_FINM24.643e-2161.7350S ribosomal protein L2 OS=Finegoldia magna (stra... [more]
RL2_DESDG4.643e-2158.5450S ribosomal protein L2 OS=Desulfovibrio desulfur... [more]
RK2_GUITH4.643e-2154.8850S ribosomal protein L2, chloroplastic OS=Guillar... [more]
RL2_CLOD66.064e-2159.2650S ribosomal protein L2 OS=Clostridium difficile ... [more]
RL2_ROSS17.920e-2156.7950S ribosomal protein L2 OS=Roseiflexus sp. (strai... [more]
RL2_DESHY7.920e-2158.0250S ribosomal protein L2 OS=Desulfitobacterium haf... [more]
RL2_DESHD7.920e-2158.0250S ribosomal protein L2 OS=Desulfitobacterium haf... [more]
RL2_TRIEI1.034e-2055.5650S ribosomal protein L2 OS=Trichodesmium erythrae... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionC07004D01SK SaltLeaf1 Citrus clementina cDNA clone C07004D01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX299948 ID=CX299948; Name=CX299948; organism=Citrus clementina; type=EST; length=249bp
ACATAACATAGAAATCACACTTGGAAAGGGTGGACAATTAGCTAGAGCAG
CGGGTGCTGTAGCGAAACTGATTGCAAAAGAGGGGAAATCGGCCACATTA
AAATTACCTTCTGGGGAGGTCCGTTTGATATCCAAAAACTGCTCAGCAAC
AGTCGGACAAGTGGGGAATGTTGGGGCGAACCAGAAAAGTTTGGGTAGAG
CCGGATCTAAATGTTGGCTAGGGAAGCGTCCTGTAGTAAGAGGAGTAGT
back to top