CX299948

Overview
NameCX299948
Unique NameCX299948
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length249
Libraries
Library NameType
SaltLeaf1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig10362 contig Ccv1_Contig10362:1152..1400. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of CX299948 vs. ExPASy Swiss-Prot
Match: RK2_DIOEL (50S ribosomal protein L2, chloroplastic OS=Dioscorea elephantipes GN=rpl2-A PE=3 SV=1)

HSP 1 Score: 158.303 bits (399), Expect = 1.100e-38
Identity = 79/82 (96.34%), Postives = 80/82 (97.56%), Query Frame = 2 
Query:    2 HNIEITLGKGGQLARAAGAVAKLIAKEGKSATLKLPSGEVRLISKNCSATVGQVGNVGANQKSLGRAGSKCWLGKRPVVRGV 247
            HNIEITLGKGGQLARAAGAVAKLIAKEGKSATL+LPSGEVRLISKNC ATVGQVGNVG NQKSLGRAGSKCWLGKRPVVRGV
Sbjct:  141 HNIEITLGKGGQLARAAGAVAKLIAKEGKSATLRLPSGEVRLISKNCLATVGQVGNVGVNQKSLGRAGSKCWLGKRPVVRGV 222
[Close]
BLAST of CX299948 vs. ExPASy Swiss-Prot
Match: RK2_AMBTC (50S ribosomal protein L2, chloroplastic OS=Amborella trichopoda GN=rpl2-A PE=2 SV=1)

HSP 1 Score: 158.303 bits (399), Expect = 1.100e-38
Identity = 79/82 (96.34%), Postives = 80/82 (97.56%), Query Frame = 2 
Query:    2 HNIEITLGKGGQLARAAGAVAKLIAKEGKSATLKLPSGEVRLISKNCSATVGQVGNVGANQKSLGRAGSKCWLGKRPVVRGV 247
            HNIEITLGKGGQLARAAGAVAKLIAKEGKSATL+LPSGEVRLISKNCSATVGQVGNVG NQK LGRAGSKCWLGKRPVVRGV
Sbjct:  140 HNIEITLGKGGQLARAAGAVAKLIAKEGKSATLRLPSGEVRLISKNCSATVGQVGNVGVNQKILGRAGSKCWLGKRPVVRGV 221
[Close]
BLAST of CX299948 vs. ExPASy Swiss-Prot
Match: RK2_TOBAC (50S ribosomal protein L2, chloroplastic OS=Nicotiana tabacum GN=rpl2-A PE=3 SV=1)

HSP 1 Score: 157.147 bits (396), Expect = 2.451e-38
Identity = 80/82 (97.56%), Postives = 80/82 (97.56%), Query Frame = 2 
Query:    2 HNIEITLGKGGQLARAAGAVAKLIAKEGKSATLKLPSGEVRLISKNCSATVGQVGNVGANQKSLGRAGSKCWLGKRPVVRGV 247
            HNIEITLGKGGQLARAAGAVAKLIAKEGKSATLKLPSGEVRLISKNCSATVGQVGNVG NQKSLGRAGSK WLGKRPVVRGV
Sbjct:  140 HNIEITLGKGGQLARAAGAVAKLIAKEGKSATLKLPSGEVRLISKNCSATVGQVGNVGVNQKSLGRAGSKRWLGKRPVVRGV 221
[Close]
BLAST of CX299948 vs. ExPASy Swiss-Prot
Match: RK2_SOLTU (50S ribosomal protein L2, chloroplastic OS=Solanum tuberosum GN=rpl2-A PE=3 SV=1)

HSP 1 Score: 157.147 bits (396), Expect = 2.451e-38
Identity = 80/82 (97.56%), Postives = 80/82 (97.56%), Query Frame = 2 
Query:    2 HNIEITLGKGGQLARAAGAVAKLIAKEGKSATLKLPSGEVRLISKNCSATVGQVGNVGANQKSLGRAGSKCWLGKRPVVRGV 247
            HNIEITLGKGGQLARAAGAVAKLIAKEGKSATLKLPSGEVRLISKNCSATVGQVGNVG NQKSLGRAGSK WLGKRPVVRGV
Sbjct:  140 HNIEITLGKGGQLARAAGAVAKLIAKEGKSATLKLPSGEVRLISKNCSATVGQVGNVGVNQKSLGRAGSKRWLGKRPVVRGV 221
[Close]
BLAST of CX299948 vs. ExPASy Swiss-Prot
Match: RK2_SOLLC (50S ribosomal protein L2, chloroplastic OS=Solanum lycopersicum GN=rpl2-A PE=3 SV=1)

HSP 1 Score: 157.147 bits (396), Expect = 2.451e-38
Identity = 80/82 (97.56%), Postives = 80/82 (97.56%), Query Frame = 2 
Query:    2 HNIEITLGKGGQLARAAGAVAKLIAKEGKSATLKLPSGEVRLISKNCSATVGQVGNVGANQKSLGRAGSKCWLGKRPVVRGV 247
            HNIEITLGKGGQLARAAGAVAKLIAKEGKSATLKLPSGEVRLISKNCSATVGQVGNVG NQKSLGRAGSK WLGKRPVVRGV
Sbjct:  140 HNIEITLGKGGQLARAAGAVAKLIAKEGKSATLKLPSGEVRLISKNCSATVGQVGNVGVNQKSLGRAGSKRWLGKRPVVRGV 221
[Close]
BLAST of CX299948 vs. ExPASy Swiss-Prot
Match: RK2_SOLBU (50S ribosomal protein L2, chloroplastic OS=Solanum bulbocastanum GN=rpl2-A PE=3 SV=1)

HSP 1 Score: 157.147 bits (396), Expect = 2.451e-38
Identity = 80/82 (97.56%), Postives = 80/82 (97.56%), Query Frame = 2 
Query:    2 HNIEITLGKGGQLARAAGAVAKLIAKEGKSATLKLPSGEVRLISKNCSATVGQVGNVGANQKSLGRAGSKCWLGKRPVVRGV 247
            HNIEITLGKGGQLARAAGAVAKLIAKEGKSATLKLPSGEVRLISKNCSATVGQVGNVG NQKSLGRAGSK WLGKRPVVRGV
Sbjct:  140 HNIEITLGKGGQLARAAGAVAKLIAKEGKSATLKLPSGEVRLISKNCSATVGQVGNVGVNQKSLGRAGSKRWLGKRPVVRGV 221
[Close]
BLAST of CX299948 vs. ExPASy Swiss-Prot
Match: RK2_SILLA (50S ribosomal protein L2, chloroplastic OS=Silene latifolia GN=rpl2 PE=3 SV=1)

HSP 1 Score: 157.147 bits (396), Expect = 2.451e-38
Identity = 80/82 (97.56%), Postives = 80/82 (97.56%), Query Frame = 2 
Query:    2 HNIEITLGKGGQLARAAGAVAKLIAKEGKSATLKLPSGEVRLISKNCSATVGQVGNVGANQKSLGRAGSKCWLGKRPVVRGV 247
            HNIEITLGKGGQLARAAGAVAKLIAKEGKSATLKLPSGEVRLISKNCSATVGQVGNVG NQKSLGRAGSK WLGKRPVVRGV
Sbjct:  140 HNIEITLGKGGQLARAAGAVAKLIAKEGKSATLKLPSGEVRLISKNCSATVGQVGNVGVNQKSLGRAGSKRWLGKRPVVRGV 221
[Close]
BLAST of CX299948 vs. ExPASy Swiss-Prot
Match: RK2_RANMC (50S ribosomal protein L2, chloroplastic OS=Ranunculus macranthus GN=rpl2-A PE=3 SV=1)

HSP 1 Score: 157.147 bits (396), Expect = 2.451e-38
Identity = 80/82 (97.56%), Postives = 80/82 (97.56%), Query Frame = 2 
Query:    2 HNIEITLGKGGQLARAAGAVAKLIAKEGKSATLKLPSGEVRLISKNCSATVGQVGNVGANQKSLGRAGSKCWLGKRPVVRGV 247
            HNIEITLGKGGQLARAAGAVAKLIAKEGKSATLKLPSGEVRLISKNCSATVGQVGNVG NQKSLGRAGSK WLGKRPVVRGV
Sbjct:  140 HNIEITLGKGGQLARAAGAVAKLIAKEGKSATLKLPSGEVRLISKNCSATVGQVGNVGVNQKSLGRAGSKRWLGKRPVVRGV 221
[Close]
BLAST of CX299948 vs. ExPASy Swiss-Prot
Match: RK2_OLIPU (50S ribosomal protein L2, chloroplastic OS=Olimarabidopsis pumila GN=rpl2-A PE=3 SV=1)

HSP 1 Score: 157.147 bits (396), Expect = 2.451e-38
Identity = 80/82 (97.56%), Postives = 80/82 (97.56%), Query Frame = 2 
Query:    2 HNIEITLGKGGQLARAAGAVAKLIAKEGKSATLKLPSGEVRLISKNCSATVGQVGNVGANQKSLGRAGSKCWLGKRPVVRGV 247
            HNIEITLGKGGQLARAAGAVAKLIAKEGKSATLKLPSGEVRLISKNCSATVGQVGNVG NQKSLGRAGSK WLGKRPVVRGV
Sbjct:  140 HNIEITLGKGGQLARAAGAVAKLIAKEGKSATLKLPSGEVRLISKNCSATVGQVGNVGVNQKSLGRAGSKRWLGKRPVVRGV 221
[Close]
BLAST of CX299948 vs. ExPASy Swiss-Prot
Match: RK2_NICTO (50S ribosomal protein L2, chloroplastic OS=Nicotiana tomentosiformis GN=rpl2-A PE=3 SV=1)

HSP 1 Score: 157.147 bits (396), Expect = 2.451e-38
Identity = 80/82 (97.56%), Postives = 80/82 (97.56%), Query Frame = 2 
Query:    2 HNIEITLGKGGQLARAAGAVAKLIAKEGKSATLKLPSGEVRLISKNCSATVGQVGNVGANQKSLGRAGSKCWLGKRPVVRGV 247
            HNIEITLGKGGQLARAAGAVAKLIAKEGKSATLKLPSGEVRLISKNCSATVGQVGNVG NQKSLGRAGSK WLGKRPVVRGV
Sbjct:  140 HNIEITLGKGGQLARAAGAVAKLIAKEGKSATLKLPSGEVRLISKNCSATVGQVGNVGVNQKSLGRAGSKRWLGKRPVVRGV 221
The following BLAST results are available for this feature:
BLAST of CX299948 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RK2_DIOEL1.100e-3896.3450S ribosomal protein L2, chloroplastic OS=Dioscor... [more]
RK2_AMBTC1.100e-3896.3450S ribosomal protein L2, chloroplastic OS=Amborel... [more]
RK2_TOBAC2.451e-3897.5650S ribosomal protein L2, chloroplastic OS=Nicotia... [more]
RK2_SOLTU2.451e-3897.5650S ribosomal protein L2, chloroplastic OS=Solanum... [more]
RK2_SOLLC2.451e-3897.5650S ribosomal protein L2, chloroplastic OS=Solanum... [more]
RK2_SOLBU2.451e-3897.5650S ribosomal protein L2, chloroplastic OS=Solanum... [more]
RK2_SILLA2.451e-3897.5650S ribosomal protein L2, chloroplastic OS=Silene ... [more]
RK2_RANMC2.451e-3897.5650S ribosomal protein L2, chloroplastic OS=Ranuncu... [more]
RK2_OLIPU2.451e-3897.5650S ribosomal protein L2, chloroplastic OS=Olimara... [more]
RK2_NICTO2.451e-3897.5650S ribosomal protein L2, chloroplastic OS=Nicotia... [more]

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Properties
Property NameValue
Genbank descriptionC07004D01SK SaltLeaf1 Citrus clementina cDNA clone C07004D01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX299948 ID=CX299948; Name=CX299948; organism=Citrus clementina; type=EST; length=249bp
ACATAACATAGAAATCACACTTGGAAAGGGTGGACAATTAGCTAGAGCAG
CGGGTGCTGTAGCGAAACTGATTGCAAAAGAGGGGAAATCGGCCACATTA
AAATTACCTTCTGGGGAGGTCCGTTTGATATCCAAAAACTGCTCAGCAAC
AGTCGGACAAGTGGGGAATGTTGGGGCGAACCAGAAAAGTTTGGGTAGAG
CCGGATCTAAATGTTGGCTAGGGAAGCGTCCTGTAGTAAGAGGAGTAGT
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