CX299948

Overview
NameCX299948
Unique NameCX299948
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length249
Libraries
Library NameType
SaltLeaf1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX299948 vs. ExPASy Swiss-Prot
Match: RL2_NEIM0 (50S ribosomal protein L2 OS=Neisseria meningitidis serogroup C (strain 053442) GN=rplB PE=3 SV=1)

HSP 1 Score: 88.9669 bits (219), Expect = 8.196e-18
Identity = 45/82 (54.88%), Postives = 58/82 (70.73%), Query Frame = 2
Query:    2 HNIEITLGKGGQLARAAGAVAKLIAKEGKSATLKLPSGEVRLISKNCSATVGQVGNVGANQKSLGRAGSKCWLGKRPVVRGV 247
            H IE+  GKG Q+AR+AGA A L+AKE   A ++L SGEVR I+ NC AT+G+VGN   + K +G+AG+  W G RP VRGV
Sbjct:  142 HCIEMKPGKGAQIARSAGASAVLLAKEAAYAQVRLRSGEVRKINVNCRATIGEVGNEEQSLKKIGKAGANRWRGIRPTVRGV 223          
BLAST of CX299948 vs. ExPASy Swiss-Prot
Match: RL2_HAEIN (50S ribosomal protein L2 OS=Haemophilus influenzae GN=rplB PE=3 SV=2)

HSP 1 Score: 88.9669 bits (219), Expect = 8.196e-18
Identity = 42/81 (51.85%), Postives = 57/81 (70.37%), Query Frame = 2
Query:    2 HNIEITLGKGGQLARAAGAVAKLIAKEGKSATLKLPSGEVRLISKNCSATVGQVGNVGANQKSLGRAGSKCWLGKRPVVRG 244
            HN+E+  GKGGQ+AR+AGA  ++IA+EG   TL+L SGE+R +   C AT+G+VGN     + LG+AG+  W G RP VRG
Sbjct:  142 HNVELKPGKGGQIARSAGAYVQIIAREGNYVTLRLRSGEMRKVLAECVATIGEVGNSEHMLRVLGKAGANRWRGIRPTVRG 222          
BLAST of CX299948 vs. ExPASy Swiss-Prot
Match: RL2_HAEIG (50S ribosomal protein L2 OS=Haemophilus influenzae (strain PittGG) GN=rplB PE=3 SV=1)

HSP 1 Score: 88.9669 bits (219), Expect = 8.196e-18
Identity = 42/81 (51.85%), Postives = 57/81 (70.37%), Query Frame = 2
Query:    2 HNIEITLGKGGQLARAAGAVAKLIAKEGKSATLKLPSGEVRLISKNCSATVGQVGNVGANQKSLGRAGSKCWLGKRPVVRG 244
            HN+E+  GKGGQ+AR+AGA  ++IA+EG   TL+L SGE+R +   C AT+G+VGN     + LG+AG+  W G RP VRG
Sbjct:  142 HNVELKPGKGGQIARSAGAYVQIIAREGNYVTLRLRSGEMRKVLAECVATIGEVGNSEHMLRVLGKAGANRWRGIRPTVRG 222          
BLAST of CX299948 vs. ExPASy Swiss-Prot
Match: RL2_HAEIE (50S ribosomal protein L2 OS=Haemophilus influenzae (strain PittEE) GN=rplB PE=3 SV=1)

HSP 1 Score: 88.9669 bits (219), Expect = 8.196e-18
Identity = 42/81 (51.85%), Postives = 57/81 (70.37%), Query Frame = 2
Query:    2 HNIEITLGKGGQLARAAGAVAKLIAKEGKSATLKLPSGEVRLISKNCSATVGQVGNVGANQKSLGRAGSKCWLGKRPVVRG 244
            HN+E+  GKGGQ+AR+AGA  ++IA+EG   TL+L SGE+R +   C AT+G+VGN     + LG+AG+  W G RP VRG
Sbjct:  142 HNVELKPGKGGQIARSAGAYVQIIAREGNYVTLRLRSGEMRKVLAECVATIGEVGNSEHMLRVLGKAGANRWRGIRPTVRG 222          
BLAST of CX299948 vs. ExPASy Swiss-Prot
Match: RL2_HAEI8 (50S ribosomal protein L2 OS=Haemophilus influenzae (strain 86-028NP) GN=rplB PE=3 SV=1)

HSP 1 Score: 88.9669 bits (219), Expect = 8.196e-18
Identity = 42/81 (51.85%), Postives = 57/81 (70.37%), Query Frame = 2
Query:    2 HNIEITLGKGGQLARAAGAVAKLIAKEGKSATLKLPSGEVRLISKNCSATVGQVGNVGANQKSLGRAGSKCWLGKRPVVRG 244
            HN+E+  GKGGQ+AR+AGA  ++IA+EG   TL+L SGE+R +   C AT+G+VGN     + LG+AG+  W G RP VRG
Sbjct:  142 HNVELKPGKGGQIARSAGAYVQIIAREGNYVTLRLRSGEMRKVLAECVATIGEVGNSEHMLRVLGKAGANRWRGIRPTVRG 222          
BLAST of CX299948 vs. ExPASy Swiss-Prot
Match: RL2_HAEDU (50S ribosomal protein L2 OS=Haemophilus ducreyi GN=rplB PE=3 SV=1)

HSP 1 Score: 88.9669 bits (219), Expect = 8.196e-18
Identity = 42/81 (51.85%), Postives = 57/81 (70.37%), Query Frame = 2
Query:    2 HNIEITLGKGGQLARAAGAVAKLIAKEGKSATLKLPSGEVRLISKNCSATVGQVGNVGANQKSLGRAGSKCWLGKRPVVRG 244
            HN+E+  GKGGQ+AR+AGA  ++IA+EG   TL+L SGE+R +   C AT+G+VGN     + LG+AG+  W G RP VRG
Sbjct:  142 HNVELKPGKGGQIARSAGAYVQIIAREGNYVTLRLRSGEMRKVLAECIATIGEVGNSEHMLRVLGKAGANRWRGIRPTVRG 222          
BLAST of CX299948 vs. ExPASy Swiss-Prot
Match: RL2_EDWI9 (50S ribosomal protein L2 OS=Edwardsiella ictaluri (strain 93-146) GN=rplB PE=3 SV=1)

HSP 1 Score: 88.9669 bits (219), Expect = 8.196e-18
Identity = 42/81 (51.85%), Postives = 58/81 (71.60%), Query Frame = 2
Query:    2 HNIEITLGKGGQLARAAGAVAKLIAKEGKSATLKLPSGEVRLISKNCSATVGQVGNVGANQKSLGRAGSKCWLGKRPVVRG 244
            HN+E+  GKGGQLAR+AGA  +++A++G   TL+L SGE+R I  +C AT+G+VGN     + LG+AG+  W G RP VRG
Sbjct:  142 HNVEMKPGKGGQLARSAGAYVQIVARDGAYVTLRLRSGEMRKIPADCRATLGEVGNAEHMLRVLGKAGAARWRGVRPTVRG 222          
BLAST of CX299948 vs. ExPASy Swiss-Prot
Match: RL2_CLOB8 (50S ribosomal protein L2 OS=Clostridium beijerinckii (strain ATCC 51743 / NCIMB 8052) GN=rplB PE=3 SV=1)

HSP 1 Score: 88.9669 bits (219), Expect = 8.196e-18
Identity = 44/81 (54.32%), Postives = 57/81 (70.37%), Query Frame = 2
Query:    2 HNIEITLGKGGQLARAAGAVAKLIAKEGKSATLKLPSGEVRLISKNCSATVGQVGNVGANQKSLGRAGSKCWLGKRPVVRG 244
            HNIE+  GKGGQL RAAG  A+L+AKEG  ATL+LPSGE+R +   C AT+G + N   +  ++G+AG K  +G RP VRG
Sbjct:  142 HNIELQRGKGGQLVRAAGGSAQLMAKEGDYATLRLPSGEMRYVRIECRATIGTLSNATNDIVNIGKAGRKRHMGWRPTVRG 222          
BLAST of CX299948 vs. ExPASy Swiss-Prot
Match: RL2_BUCAT (50S ribosomal protein L2 OS=Buchnera aphidicola subsp. Acyrthosiphon pisum (strain Tuc7) GN=rplB PE=3 SV=1)

HSP 1 Score: 88.9669 bits (219), Expect = 8.196e-18
Identity = 42/81 (51.85%), Postives = 58/81 (71.60%), Query Frame = 2
Query:    2 HNIEITLGKGGQLARAAGAVAKLIAKEGKSATLKLPSGEVRLISKNCSATVGQVGNVGANQKSLGRAGSKCWLGKRPVVRG 244
            HN+E+  GKGGQ+AR+AG+  +L+A + + ATL+L SGE+R    NC AT+G+VGN     K LG+AG+  W+G RP VRG
Sbjct:  142 HNVELKPGKGGQIARSAGSYVQLVAFDEEYATLRLRSGEMRKTQSNCRATIGEVGNSEHMLKVLGKAGASRWIGIRPTVRG 222          
BLAST of CX299948 vs. ExPASy Swiss-Prot
Match: RL2_BUCAI (50S ribosomal protein L2 OS=Buchnera aphidicola subsp. Acyrthosiphon pisum GN=rplB PE=3 SV=1)

HSP 1 Score: 88.9669 bits (219), Expect = 8.196e-18
Identity = 42/81 (51.85%), Postives = 58/81 (71.60%), Query Frame = 2
Query:    2 HNIEITLGKGGQLARAAGAVAKLIAKEGKSATLKLPSGEVRLISKNCSATVGQVGNVGANQKSLGRAGSKCWLGKRPVVRG 244
            HN+E+  GKGGQ+AR+AG+  +L+A + + ATL+L SGE+R    NC AT+G+VGN     K LG+AG+  W+G RP VRG
Sbjct:  142 HNVELKPGKGGQIARSAGSYVQLVAFDEEYATLRLRSGEMRKTQSNCRATIGEVGNSEHMLKVLGKAGASRWIGIRPTVRG 222          
The following BLAST results are available for this feature:
BLAST of CX299948 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RL2_NEIM08.196e-1854.8850S ribosomal protein L2 OS=Neisseria meningitidis... [more]
RL2_HAEIN8.196e-1851.8550S ribosomal protein L2 OS=Haemophilus influenzae... [more]
RL2_HAEIG8.196e-1851.8550S ribosomal protein L2 OS=Haemophilus influenzae... [more]
RL2_HAEIE8.196e-1851.8550S ribosomal protein L2 OS=Haemophilus influenzae... [more]
RL2_HAEI88.196e-1851.8550S ribosomal protein L2 OS=Haemophilus influenzae... [more]
RL2_HAEDU8.196e-1851.8550S ribosomal protein L2 OS=Haemophilus ducreyi GN... [more]
RL2_EDWI98.196e-1851.8550S ribosomal protein L2 OS=Edwardsiella ictaluri ... [more]
RL2_CLOB88.196e-1854.3250S ribosomal protein L2 OS=Clostridium beijerinck... [more]
RL2_BUCAT8.196e-1851.8550S ribosomal protein L2 OS=Buchnera aphidicola su... [more]
RL2_BUCAI8.196e-1851.8550S ribosomal protein L2 OS=Buchnera aphidicola su... [more]

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Properties
Property NameValue
Genbank descriptionC07004D01SK SaltLeaf1 Citrus clementina cDNA clone C07004D01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX299948 ID=CX299948; Name=CX299948; organism=Citrus clementina; type=EST; length=249bp
ACATAACATAGAAATCACACTTGGAAAGGGTGGACAATTAGCTAGAGCAG
CGGGTGCTGTAGCGAAACTGATTGCAAAAGAGGGGAAATCGGCCACATTA
AAATTACCTTCTGGGGAGGTCCGTTTGATATCCAAAAACTGCTCAGCAAC
AGTCGGACAAGTGGGGAATGTTGGGGCGAACCAGAAAAGTTTGGGTAGAG
CCGGATCTAAATGTTGGCTAGGGAAGCGTCCTGTAGTAAGAGGAGTAGT
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