CX299949

Overview
NameCX299949
Unique NameCX299949
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length686
Libraries
Library NameType
SaltLeaf1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX299949 vs. ExPASy Swiss-Prot
Match: NDK_FRASC (Nucleoside diphosphate kinase OS=Frankia sp. (strain CcI3) GN=ndk PE=3 SV=1)

HSP 1 Score: 138.272 bits (347), Expect = 3.734e-32
Identity = 63/117 (53.85%), Postives = 92/117 (78.63%), Query Frame = 2
Query:   17 GLVGEIIIRFEKKGFSLKGLKLMTVDRPFAEKHYEDLSSKPFFGSLIEYITSGPVVAMIWEGEGVVKTGRTIIGATNPAQSAPGTIRGDLAIVTGRNIIHGSDSVESAQKEIALWFP 367
            GLVGE++ R E+KG +L  L+L T++R  AE HY + +SKPFFG L+++ITSGP+VA++ EG   V+  R +IGAT+P ++APG++RGD A+  G+N++HGSDS ESA++EI L+FP
Sbjct:   18 GLVGEVVGRLERKGLTLVALELRTLERSVAETHYGEHASKPFFGELVDFITSGPLVALVAEGPRAVEASRGLIGATDPVKAAPGSLRGDYALEIGQNLVHGSDSPESAKREIDLFFP 134          
BLAST of CX299949 vs. ExPASy Swiss-Prot
Match: NDK_CORU7 (Nucleoside diphosphate kinase OS=Corynebacterium urealyticum (strain ATCC 43042 / DSM 7109) GN=ndk PE=3 SV=1)

HSP 1 Score: 138.272 bits (347), Expect = 3.734e-32
Identity = 66/119 (55.46%), Postives = 85/119 (71.43%), Query Frame = 2
Query:   17 GLVGEIIIRFEKKGFSLKGLKLMTVDRPFAEKHYEDLSSKPFFGSLIEYITSGPVVAMIWEGEGVVKTGRTIIGATNPAQSA-PGTIRGDLAIVTGRNIIHGSDSVESAQKEIALWFPD 370
            G VGEII R E+KG  L  + L T DR  AEKHYE+   KPFFG L+++ITS P+VA I EGE  +   R + G T+P ++A PGTIRGD A+  G N++HGSDS ESA++EIA+WFP+
Sbjct:   17 GHVGEIISRIERKGLKLVEMDLRTADRATAEKHYEEHKDKPFFGELVDFITSAPLVAGIVEGESAIAAWRQLAGGTHPVEAATPGTIRGDFALTVGENVVHGSDSPESAEREIAIWFPN 135          
BLAST of CX299949 vs. ExPASy Swiss-Prot
Match: NDK_THETN (Nucleoside diphosphate kinase OS=Thermoanaerobacter tengcongensis GN=ndk PE=3 SV=1)

HSP 1 Score: 137.887 bits (346), Expect = 4.877e-32
Identity = 68/118 (57.63%), Postives = 83/118 (70.34%), Query Frame = 2
Query:   17 GLVGEIIIRFEKKGFSLKGLKLMTVDRPFAEKHYEDLSSKPFFGSLIEYITSGPVVAMIWEGEGVVKTGRTIIGATNPAQSAPGTIRGDLAIVTGRNIIHGSDSVESAQKEIALWFPD 370
            GL+GEI+ R+E KG  LK  K++T      EKHYE+   KPFF  LIEY++SGPV AM+ EGE  VK  R I GAT    + PGTIRGD A  T  N++HGSDSVESA++EIALWFP+
Sbjct:   19 GLIGEILKRYENKGLRLKAAKVVTPSIELLEKHYEEHKGKPFFKPLIEYMSSGPVFAMVLEGENAVKLVRMINGATKVEDALPGTIRGDFASSTTYNVVHGSDSVESAKREIALWFPE 136          
BLAST of CX299949 vs. ExPASy Swiss-Prot
Match: NDK_CORJK (Nucleoside diphosphate kinase OS=Corynebacterium jeikeium (strain K411) GN=ndk PE=3 SV=1)

HSP 1 Score: 137.887 bits (346), Expect = 4.877e-32
Identity = 67/121 (55.37%), Postives = 84/121 (69.42%), Query Frame = 2
Query:   11 EGGLVGEIIIRFEKKGFSLKGLKLMTVDRPFAEKHYEDLSSKPFFGSLIEYITSGPVVAMIWEGEGVVKTGRTIIGATNPAQSA-PGTIRGDLAIVTGRNIIHGSDSVESAQKEIALWFPD 370
            + G VGEII R EKKG  L  L L T DR  AEKHY + S KPFFG L+++ITS P+VA I EGE  +   R + G T+P + A PGTIRGD A+  G N++HGSDS ESA++EI +WFP+
Sbjct:   15 KNGHVGEIISRIEKKGLKLVELDLRTADRETAEKHYAEHSDKPFFGELVDFITSAPLVAGIVEGESAIAAWRQLAGGTHPVEKATPGTIRGDFALTVGENVVHGSDSPESAEREIGIWFPN 135          
BLAST of CX299949 vs. ExPASy Swiss-Prot
Match: NDK_HALMA (Nucleoside diphosphate kinase OS=Haloarcula marismortui GN=ndk PE=3 SV=1)

HSP 1 Score: 137.502 bits (345), Expect = 6.369e-32
Identity = 63/136 (46.32%), Postives = 92/136 (67.65%), Query Frame = 2
Query:   17 GLVGEIIIRFEKKGFSLKGLKLMTVDRPFAEKHYEDLSSKPFFGSLIEYITSGPVVAMIWEGEGVVKTGRTIIGATNPAQSAPGTIRGDLAIVTGRNIIHGSDSVESA--QKEIALWFPDGP-INWQSSLHPWIYE 415
            GL+G+I+ RFE +G  + G K M +D+  AE+HY +   KPFF  L+++ITSGPV AM+WEG+   +  RT++G T+PA+SAPGTIRGD  +  GRN+IHGSD  +    ++EI L+F +   ++W      W+YE
Sbjct:   19 GLIGDIVSRFEDRGLKMVGGKFMQIDQELAEEHYGEHEDKPFFDGLVDFITSGPVFAMVWEGQDATRQVRTMMGETDPAESAPGTIRGDYGLDLGRNVIHGSDHEDEGANEREIELFFDEAELVDWDQIDSSWLYE 154          
BLAST of CX299949 vs. ExPASy Swiss-Prot
Match: NDK_FRASN (Nucleoside diphosphate kinase OS=Frankia sp. (strain EAN1pec) GN=ndk PE=3 SV=1)

HSP 1 Score: 137.502 bits (345), Expect = 6.369e-32
Identity = 64/117 (54.70%), Postives = 91/117 (77.78%), Query Frame = 2
Query:   17 GLVGEIIIRFEKKGFSLKGLKLMTVDRPFAEKHYEDLSSKPFFGSLIEYITSGPVVAMIWEGEGVVKTGRTIIGATNPAQSAPGTIRGDLAIVTGRNIIHGSDSVESAQKEIALWFP 367
            GLVGE++ R E+KG  +  L+L T++R  AE HY + +SKPFFG L+E+ITSGP+VA++ EG   V+  R +IGAT+P ++APG++RGD A+  G+N+IHGSDS ESA++EI L+FP
Sbjct:   18 GLVGEVVGRIERKGLKIVALELRTLERSVAETHYGEHASKPFFGELVEFITSGPLVALVAEGPRAVEALRGLIGATDPVKAAPGSLRGDFALEIGQNLIHGSDSPESAKREIDLFFP 134          
BLAST of CX299949 vs. ExPASy Swiss-Prot
Match: NDK_CORGL (Nucleoside diphosphate kinase OS=Corynebacterium glutamicum GN=ndk PE=1 SV=1)

HSP 1 Score: 137.502 bits (345), Expect = 6.369e-32
Identity = 65/119 (54.62%), Postives = 85/119 (71.43%), Query Frame = 2
Query:   17 GLVGEIIIRFEKKGFSLKGLKLMTVDRPFAEKHYEDLSSKPFFGSLIEYITSGPVVAMIWEGEGVVKTGRTIIGATNP-AQSAPGTIRGDLAIVTGRNIIHGSDSVESAQKEIALWFPD 370
            G VGEII R E+KG  L  L L   DR  AEKHYE+ + KPFFG L+E+ITS P++A I EGE  +   R + G T+P A++ PGTIRGD A+  G N++HGSDS ESA++EI++WFP+
Sbjct:   17 GHVGEIIARIERKGLKLAALDLRVADRETAEKHYEEHADKPFFGELVEFITSAPLIAGIVEGERAIDAWRQLAGGTDPVAKATPGTIRGDFALTVGENVVHGSDSPESAEREISIWFPN 135          
BLAST of CX299949 vs. ExPASy Swiss-Prot
Match: NDK_CORGB (Nucleoside diphosphate kinase OS=Corynebacterium glutamicum (strain R) GN=ndk PE=3 SV=1)

HSP 1 Score: 137.502 bits (345), Expect = 6.369e-32
Identity = 65/119 (54.62%), Postives = 85/119 (71.43%), Query Frame = 2
Query:   17 GLVGEIIIRFEKKGFSLKGLKLMTVDRPFAEKHYEDLSSKPFFGSLIEYITSGPVVAMIWEGEGVVKTGRTIIGATNP-AQSAPGTIRGDLAIVTGRNIIHGSDSVESAQKEIALWFPD 370
            G VGEII R E+KG  L  L L   DR  AEKHYE+ + KPFFG L+E+ITS P++A I EGE  +   R + G T+P A++ PGTIRGD A+  G N++HGSDS ESA++EI++WFP+
Sbjct:   17 GHVGEIIARIERKGLKLAALDLRVADRETAEKHYEEHADKPFFGELVEFITSAPLIAGIVEGERAIDAWRQLAGGTDPVAKATPGTIRGDFALTVGENVVHGSDSPESAEREISIWFPN 135          
BLAST of CX299949 vs. ExPASy Swiss-Prot
Match: NDK_CHLAD (Nucleoside diphosphate kinase OS=Chloroflexus aggregans (strain MD-66 / DSM 9485) GN=ndk PE=3 SV=1)

HSP 1 Score: 137.502 bits (345), Expect = 6.369e-32
Identity = 68/136 (50.00%), Postives = 92/136 (67.65%), Query Frame = 2
Query:   17 GLVGEIIIRFEKKGFSLKGLKLMTVDRPFAEKHYEDLSSKPFFGSLIEYITSGPVVAMIWEGE-GVVKTGRTIIGATNPAQSAPGTIRGDLAIVTGRNIIHGSDSVESAQKEIALWFPDGPI--NWQSSLHPWIYE 415
            GL+G II RFE++G   +GLKLM VD   A +HY +   K FF  L++YITS PVV  +  G+ G V+  RT++GATNPA++APGTIRGD  +  GRN+IH SDS ES ++E A++F    +  +W  +L  WIYE
Sbjct:   16 GLIGAIISRFEQRGLKFQGLKLMQVDEALARRHYAEHEGKSFFEGLVKYITSAPVVVAVVAGKPGTVELVRTMVGATNPAKAAPGTIRGDFGVDIGRNLIHASDSPESGERETAIFFQPHELIGDWNRTLDGWIYE 151          
BLAST of CX299949 vs. ExPASy Swiss-Prot
Match: NDK_NATPD (Nucleoside diphosphate kinase OS=Natronomonas pharaonis (strain DSM 2160 / ATCC 35678) GN=ndk PE=3 SV=1)

HSP 1 Score: 136.732 bits (343), Expect = 1.086e-31
Identity = 67/135 (49.63%), Postives = 92/135 (68.15%), Query Frame = 2
Query:   17 GLVGEIIIRFEKKGFSLKGLKLMTVDRPFAEKHYEDLSSKPFFGSLIEYITSGPVVAMIWEGEGVVKTGRTIIGATNPAQSAPGTIRGDLAIVTGRNIIHGSDSVE-SAQKEIALWFPDGPI-NWQSSLHPWIYE 415
            GL+G+I+ RFE +G  L   K M +D   A +HY +   KPFF  L E+ITSGPV AM+WEG+  V   RT++G T+PA+SAPGTIRGD  +  GRN+IHGSD+   SA++EI L+F D  + +++    PW+YE
Sbjct:   19 GLIGDIVSRFEDRGLKLVAGKFMQIDDELAREHYAEHVDKPFFDELKEFITSGPVFAMVWEGQDAVAQVRTMMGETDPAESAPGTIRGDFGLDLGRNVIHGSDTEPGSAEREIGLFFDDDELQDYERIDEPWLYE 153          
The following BLAST results are available for this feature:
BLAST of CX299949 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
NDK_FRASC3.734e-3253.85Nucleoside diphosphate kinase OS=Frankia sp. (stra... [more]
NDK_CORU73.734e-3255.46Nucleoside diphosphate kinase OS=Corynebacterium u... [more]
NDK_THETN4.877e-3257.63Nucleoside diphosphate kinase OS=Thermoanaerobacte... [more]
NDK_CORJK4.877e-3255.37Nucleoside diphosphate kinase OS=Corynebacterium j... [more]
NDK_HALMA6.369e-3246.32Nucleoside diphosphate kinase OS=Haloarcula marism... [more]
NDK_FRASN6.369e-3254.70Nucleoside diphosphate kinase OS=Frankia sp. (stra... [more]
NDK_CORGL6.369e-3254.62Nucleoside diphosphate kinase OS=Corynebacterium g... [more]
NDK_CORGB6.369e-3254.62Nucleoside diphosphate kinase OS=Corynebacterium g... [more]
NDK_CHLAD6.369e-3250.00Nucleoside diphosphate kinase OS=Chloroflexus aggr... [more]
NDK_NATPD1.086e-3149.63Nucleoside diphosphate kinase OS=Natronomonas phar... [more]

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Properties
Property NameValue
Genbank descriptionC07004D02SK SaltLeaf1 Citrus clementina cDNA clone C07004D02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX299949 ID=CX299949; Name=CX299949; organism=Citrus clementina; type=EST; length=686bp
AATTCGGCACGAGGGAGGCCTTGTTGGTGAAATCATCATCAGATTTGAGA
AGAAGGGTTTCTCCTTGAAGGGTTTGAAGCTTATGACTGTGGACCGCCCT
TTTGCTGAGAAGCACTATGAGGATTTGTCATCGAAGCCTTTCTTTGGTTC
TCTGATTGAGTACATTACCTCTGGTCCTGTTGTTGCTATGATTTGGGAGG
GTGAAGGTGTTGTTAAGACTGGCCGCACTATTATTGGAGCCACCAACCCT
GCGCAGTCTGCTCCTGGAACCATCCGTGGTGATTTGGCTATCGTGACGGG
CAGGAATATCATCCATGGAAGTGACTCAGTTGAGAGTGCCCAGAAAGAAA
TCGCCTTGTGGTTCCCTGATGGCCCTATTAACTGGCAGAGCAGCCTTCAC
CCTTGGATCTATGAGTAAACTAATGTTTGGTTGAGGAGCCTAATTGTTCC
TGCAGTTAGACTTATCCCTATCCCTATCCCTATTTCCTTATTTATGGTTA
CTCCTTGTTGGTGAACTGTTATGAAGTATTGAGTTAAATTGAGACCAATC
CTGGTTATGTTGGCTGCTTTCATTCTTGTGGTTGCCATATACAATATTTA
AGCTTTTTTGTTGACTGTATTATGAATTGAGTTTGTTAATGGTTAGCACA
TGATGGTTGCACTTTTTAAAAAAAAAAAAAAAAAAA
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