CX299949

Overview
NameCX299949
Unique NameCX299949
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length686
Libraries
Library NameType
SaltLeaf1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX299949 vs. ExPASy Swiss-Prot
Match: NDK_COREF (Nucleoside diphosphate kinase OS=Corynebacterium efficiens GN=ndk PE=3 SV=2)

HSP 1 Score: 136.732 bits (343), Expect = 1.086e-31
Identity = 65/119 (54.62%), Postives = 83/119 (69.75%), Query Frame = 2
Query:   17 GLVGEIIIRFEKKGFSLKGLKLMTVDRPFAEKHYEDLSSKPFFGSLIEYITSGPVVAMIWEGEGVVKTGRTIIGATNPAQSA-PGTIRGDLAIVTGRNIIHGSDSVESAQKEIALWFPD 370
            G VGEII R E+KG  L  L L   DR  AEKHYE+ + KPFFG L+E+ITS P++A I EGE  +   R + G T+P   A PGTIRGD A+  G N++HGSDS ESA++EI++WFP+
Sbjct:   17 GHVGEIIARIERKGLKLAALDLRVADRETAEKHYEEHADKPFFGELVEFITSAPLIAGIVEGERAIDAWRQLAGGTDPVSKATPGTIRGDFALTVGENVVHGSDSPESAEREISIWFPN 135          
BLAST of CX299949 vs. ExPASy Swiss-Prot
Match: NDK_THET8 (Nucleoside diphosphate kinase OS=Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579) GN=ndk PE=1 SV=1)

HSP 1 Score: 136.346 bits (342), Expect = 1.419e-31
Identity = 65/116 (56.03%), Postives = 84/116 (72.41%), Query Frame = 2
Query:   17 GLVGEIIIRFEKKGFSLKGLKLMTVDRPFAEKHYEDLSSKPFFGSLIEYITSGPVVAMIWEGEGVVKTGRTIIGATNPAQSAPGTIRGDLAIVTGRNIIHGSDSVESAQKEIALWF 364
            GLVGEI+ RFE+KGF +  LKLM + +  AE+HY +   KPFF  L+ +ITSGPVVAM+ EG GVV   R ++GAT+P  + PGTIRGD A     N+IHGS ++E AQ+EIAL+F
Sbjct:   16 GLVGEILARFERKGFRIAALKLMQISQELAERHYAEHREKPFFPGLVRFITSGPVVAMVLEGPGVVAEVRKMMGATHPKDALPGTIRGDFATTIDENVIHGSATLEDAQREIALFF 131          
BLAST of CX299949 vs. ExPASy Swiss-Prot
Match: NDK_THET2 (Nucleoside diphosphate kinase OS=Thermus thermophilus (strain HB27 / ATCC BAA-163 / DSM 7039) GN=ndk PE=3 SV=1)

HSP 1 Score: 136.346 bits (342), Expect = 1.419e-31
Identity = 65/116 (56.03%), Postives = 84/116 (72.41%), Query Frame = 2
Query:   17 GLVGEIIIRFEKKGFSLKGLKLMTVDRPFAEKHYEDLSSKPFFGSLIEYITSGPVVAMIWEGEGVVKTGRTIIGATNPAQSAPGTIRGDLAIVTGRNIIHGSDSVESAQKEIALWF 364
            GLVGEI+ RFE+KGF +  LKLM + +  AE+HY +   KPFF  L+ +ITSGPVVAM+ EG GVV   R ++GAT+P  + PGTIRGD A     N+IHGS ++E AQ+EIAL+F
Sbjct:   16 GLVGEILARFERKGFRIAALKLMRISQELAERHYAEHREKPFFPGLVRFITSGPVVAMVLEGPGVVAEVRKMMGATHPKDALPGTIRGDFATTIDENVIHGSATLEDAQREIALFF 131          
BLAST of CX299949 vs. ExPASy Swiss-Prot
Match: NDK_THEPX (Nucleoside diphosphate kinase OS=Thermoanaerobacter sp. (strain X514) GN=ndk PE=3 SV=1)

HSP 1 Score: 136.346 bits (342), Expect = 1.419e-31
Identity = 66/118 (55.93%), Postives = 85/118 (72.03%), Query Frame = 2
Query:   17 GLVGEIIIRFEKKGFSLKGLKLMTVDRPFAEKHYEDLSSKPFFGSLIEYITSGPVVAMIWEGEGVVKTGRTIIGATNPAQSAPGTIRGDLAIVTGRNIIHGSDSVESAQKEIALWFPD 370
            GL+GEI+ R+E KG  LK  K++T      EKHYE+   KP++  LI+Y++SGPV AM+ EGE  VK  R + GAT   ++ PGTIRGD AI T  NIIHGSDS+ESA++EIALWFP+
Sbjct:   16 GLIGEILKRYENKGLRLKAAKVITPTIELLEKHYEEHKGKPYYKPLIQYMSSGPVFAMVLEGENAVKIVRLLNGATKVEEALPGTIRGDFAISTTFNIIHGSDSIESAKREIALWFPE 133          
BLAST of CX299949 vs. ExPASy Swiss-Prot
Match: NDK_THEP3 (Nucleoside diphosphate kinase OS=Thermoanaerobacter pseudethanolicus (strain ATCC 33223 / 39E) GN=ndk PE=3 SV=1)

HSP 1 Score: 136.346 bits (342), Expect = 1.419e-31
Identity = 66/118 (55.93%), Postives = 85/118 (72.03%), Query Frame = 2
Query:   17 GLVGEIIIRFEKKGFSLKGLKLMTVDRPFAEKHYEDLSSKPFFGSLIEYITSGPVVAMIWEGEGVVKTGRTIIGATNPAQSAPGTIRGDLAIVTGRNIIHGSDSVESAQKEIALWFPD 370
            GL+GEI+ R+E KG  LK  K++T      EKHYE+   KP++  LI+Y++SGPV AM+ EGE  VK  R + GAT   ++ PGTIRGD AI T  NIIHGSDS+ESA++EIALWFP+
Sbjct:   16 GLIGEILKRYENKGLRLKAAKVITPTIELLEKHYEEHKGKPYYKPLIQYMSSGPVFAMVLEGENAVKIVRLLNGATKVEEALPGTIRGDFAISTTFNIIHGSDSIESAKREIALWFPE 133          
BLAST of CX299949 vs. ExPASy Swiss-Prot
Match: NDK_FRAAA (Nucleoside diphosphate kinase OS=Frankia alni (strain ACN14a) GN=ndk PE=3 SV=1)

HSP 1 Score: 136.346 bits (342), Expect = 1.419e-31
Identity = 62/117 (52.99%), Postives = 91/117 (77.78%), Query Frame = 2
Query:   17 GLVGEIIIRFEKKGFSLKGLKLMTVDRPFAEKHYEDLSSKPFFGSLIEYITSGPVVAMIWEGEGVVKTGRTIIGATNPAQSAPGTIRGDLAIVTGRNIIHGSDSVESAQKEIALWFP 367
            GLVGE++ R E+KG +L  L+L T++R  AE HY + +SKPFFG L+++I SGP+VA++ EG   V+  R +IGAT+P ++APG++RGD A+  G+N++HGSDS ESA++EI L+FP
Sbjct:   18 GLVGEVVGRLERKGLTLVALELRTLERSVAETHYGEHASKPFFGELVDFIVSGPLVALVAEGPRAVEASRGLIGATDPVKAAPGSLRGDYALEIGQNLVHGSDSPESAKREIDLFFP 134          
BLAST of CX299949 vs. ExPASy Swiss-Prot
Match: NDK_UNCMA (Nucleoside diphosphate kinase OS=Uncultured methanogenic archaeon RC-I GN=ndk PE=3 SV=1)

HSP 1 Score: 135.961 bits (341), Expect = 1.853e-31
Identity = 65/134 (48.51%), Postives = 93/134 (69.40%), Query Frame = 2
Query:   17 GLVGEIIIRFEKKGFSLKGLKLMTVDRPFAEKHYEDLSSKPFFGSLIEYITSGPVVAMIWEGEGVVKTGRTIIGATNPAQSAPGTIRGDLAIVTGRNIIHGSDSVESAQKEIALWFPDGPINWQSSL-HPWIYE 415
            GLVGEII RFE++G  + G+K++ V    A++HY + ++KPFF  L+ +I SGP VAM+ EG+  V   R+++G T P +SAPGTIRGD A+  GRN+IH SDS ESA++EI+L+F    I   + +   W+YE
Sbjct:   19 GLVGEIISRFERRGLKIVGMKMLEVSEELAKQHYAEHAAKPFFPGLVSFIRSGPTVAMVIEGKDAVSMVRSMLGKTKPIESAPGTIRGDFALDMGRNVIHASDSPESAKREISLYFKTSEIATYARIDEQWLYE 152          
BLAST of CX299949 vs. ExPASy Swiss-Prot
Match: NDK_MYCTU (Nucleoside diphosphate kinase OS=Mycobacterium tuberculosis GN=ndkA PE=1 SV=1)

HSP 1 Score: 135.961 bits (341), Expect = 1.853e-31
Identity = 68/120 (56.67%), Postives = 85/120 (70.83%), Query Frame = 2
Query:   11 EGGLVGEIIIRFEKKGFSLKGLKLMTVDRPFAEKHYEDLSSKPFFGSLIEYITSGPVVAMIWEGEGVVKTGRTIIGATNPAQ-SAPGTIRGDLAIVTGRNIIHGSDSVESAQKEIALWFP 367
            E  L+GEII R E+KG ++  L+L TV    A +HY +   KPFFGSL+E+ITSGPVVA I EG   +   R + G T+P Q +APGTIRGD A+ T  N++HGSDS ESAQ+EIALWFP
Sbjct:   15 ERQLIGEIISRIERKGLTIAALQLRTVSAELASQHYAEHEGKPFFGSLLEFITSGPVVAAIVEGTRAIAAVRQLAGGTDPVQAAAPGTIRGDFALETQFNLVHGSDSAESAQREIALWFP 134          
BLAST of CX299949 vs. ExPASy Swiss-Prot
Match: NDK_MYCTA (Nucleoside diphosphate kinase OS=Mycobacterium tuberculosis (strain ATCC 25177 / H37Ra) GN=ndk PE=3 SV=1)

HSP 1 Score: 135.961 bits (341), Expect = 1.853e-31
Identity = 68/120 (56.67%), Postives = 85/120 (70.83%), Query Frame = 2
Query:   11 EGGLVGEIIIRFEKKGFSLKGLKLMTVDRPFAEKHYEDLSSKPFFGSLIEYITSGPVVAMIWEGEGVVKTGRTIIGATNPAQ-SAPGTIRGDLAIVTGRNIIHGSDSVESAQKEIALWFP 367
            E  L+GEII R E+KG ++  L+L TV    A +HY +   KPFFGSL+E+ITSGPVVA I EG   +   R + G T+P Q +APGTIRGD A+ T  N++HGSDS ESAQ+EIALWFP
Sbjct:   15 ERQLIGEIISRIERKGLTIAALQLRTVSAELASQHYAEHEGKPFFGSLLEFITSGPVVAAIVEGTRAIAAVRQLAGGTDPVQAAAPGTIRGDFALETQFNLVHGSDSAESAQREIALWFP 134          
BLAST of CX299949 vs. ExPASy Swiss-Prot
Match: NDK_MYCBT (Nucleoside diphosphate kinase OS=Mycobacterium bovis (strain BCG / Tokyo 172 / ATCC 35737 / TMC 1019) GN=ndk PE=3 SV=1)

HSP 1 Score: 135.961 bits (341), Expect = 1.853e-31
Identity = 68/120 (56.67%), Postives = 85/120 (70.83%), Query Frame = 2
Query:   11 EGGLVGEIIIRFEKKGFSLKGLKLMTVDRPFAEKHYEDLSSKPFFGSLIEYITSGPVVAMIWEGEGVVKTGRTIIGATNPAQ-SAPGTIRGDLAIVTGRNIIHGSDSVESAQKEIALWFP 367
            E  L+GEII R E+KG ++  L+L TV    A +HY +   KPFFGSL+E+ITSGPVVA I EG   +   R + G T+P Q +APGTIRGD A+ T  N++HGSDS ESAQ+EIALWFP
Sbjct:   15 ERQLIGEIISRIERKGLTIAALQLRTVSAELASQHYAEHEGKPFFGSLLEFITSGPVVAAIVEGTRAIAAVRQLAGGTDPVQAAAPGTIRGDFALETQFNLVHGSDSAESAQREIALWFP 134          
The following BLAST results are available for this feature:
BLAST of CX299949 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
NDK_COREF1.086e-3154.62Nucleoside diphosphate kinase OS=Corynebacterium e... [more]
NDK_THET81.419e-3156.03Nucleoside diphosphate kinase OS=Thermus thermophi... [more]
NDK_THET21.419e-3156.03Nucleoside diphosphate kinase OS=Thermus thermophi... [more]
NDK_THEPX1.419e-3155.93Nucleoside diphosphate kinase OS=Thermoanaerobacte... [more]
NDK_THEP31.419e-3155.93Nucleoside diphosphate kinase OS=Thermoanaerobacte... [more]
NDK_FRAAA1.419e-3152.99Nucleoside diphosphate kinase OS=Frankia alni (str... [more]
NDK_UNCMA1.853e-3148.51Nucleoside diphosphate kinase OS=Uncultured methan... [more]
NDK_MYCTU1.853e-3156.67Nucleoside diphosphate kinase OS=Mycobacterium tub... [more]
NDK_MYCTA1.853e-3156.67Nucleoside diphosphate kinase OS=Mycobacterium tub... [more]
NDK_MYCBT1.853e-3156.67Nucleoside diphosphate kinase OS=Mycobacterium bov... [more]

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Properties
Property NameValue
Genbank descriptionC07004D02SK SaltLeaf1 Citrus clementina cDNA clone C07004D02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX299949 ID=CX299949; Name=CX299949; organism=Citrus clementina; type=EST; length=686bp
AATTCGGCACGAGGGAGGCCTTGTTGGTGAAATCATCATCAGATTTGAGA
AGAAGGGTTTCTCCTTGAAGGGTTTGAAGCTTATGACTGTGGACCGCCCT
TTTGCTGAGAAGCACTATGAGGATTTGTCATCGAAGCCTTTCTTTGGTTC
TCTGATTGAGTACATTACCTCTGGTCCTGTTGTTGCTATGATTTGGGAGG
GTGAAGGTGTTGTTAAGACTGGCCGCACTATTATTGGAGCCACCAACCCT
GCGCAGTCTGCTCCTGGAACCATCCGTGGTGATTTGGCTATCGTGACGGG
CAGGAATATCATCCATGGAAGTGACTCAGTTGAGAGTGCCCAGAAAGAAA
TCGCCTTGTGGTTCCCTGATGGCCCTATTAACTGGCAGAGCAGCCTTCAC
CCTTGGATCTATGAGTAAACTAATGTTTGGTTGAGGAGCCTAATTGTTCC
TGCAGTTAGACTTATCCCTATCCCTATCCCTATTTCCTTATTTATGGTTA
CTCCTTGTTGGTGAACTGTTATGAAGTATTGAGTTAAATTGAGACCAATC
CTGGTTATGTTGGCTGCTTTCATTCTTGTGGTTGCCATATACAATATTTA
AGCTTTTTTGTTGACTGTATTATGAATTGAGTTTGTTAATGGTTAGCACA
TGATGGTTGCACTTTTTAAAAAAAAAAAAAAAAAAA
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