CX299949

Overview
NameCX299949
Unique NameCX299949
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length686
Libraries
Library NameType
SaltLeaf1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX299949 vs. ExPASy Swiss-Prot
Match: NDK_MYCBP (Nucleoside diphosphate kinase OS=Mycobacterium bovis (strain BCG / Pasteur 1173P2) GN=ndk PE=3 SV=1)

HSP 1 Score: 135.961 bits (341), Expect = 1.853e-31
Identity = 68/120 (56.67%), Postives = 85/120 (70.83%), Query Frame = 2
Query:   11 EGGLVGEIIIRFEKKGFSLKGLKLMTVDRPFAEKHYEDLSSKPFFGSLIEYITSGPVVAMIWEGEGVVKTGRTIIGATNPAQ-SAPGTIRGDLAIVTGRNIIHGSDSVESAQKEIALWFP 367
            E  L+GEII R E+KG ++  L+L TV    A +HY +   KPFFGSL+E+ITSGPVVA I EG   +   R + G T+P Q +APGTIRGD A+ T  N++HGSDS ESAQ+EIALWFP
Sbjct:   15 ERQLIGEIISRIERKGLTIAALQLRTVSAELASQHYAEHEGKPFFGSLLEFITSGPVVAAIVEGTRAIAAVRQLAGGTDPVQAAAPGTIRGDFALETQFNLVHGSDSAESAQREIALWFP 134          
BLAST of CX299949 vs. ExPASy Swiss-Prot
Match: NDK_MYCBO (Nucleoside diphosphate kinase OS=Mycobacterium bovis GN=ndk PE=3 SV=1)

HSP 1 Score: 135.961 bits (341), Expect = 1.853e-31
Identity = 68/120 (56.67%), Postives = 85/120 (70.83%), Query Frame = 2
Query:   11 EGGLVGEIIIRFEKKGFSLKGLKLMTVDRPFAEKHYEDLSSKPFFGSLIEYITSGPVVAMIWEGEGVVKTGRTIIGATNPAQ-SAPGTIRGDLAIVTGRNIIHGSDSVESAQKEIALWFP 367
            E  L+GEII R E+KG ++  L+L TV    A +HY +   KPFFGSL+E+ITSGPVVA I EG   +   R + G T+P Q +APGTIRGD A+ T  N++HGSDS ESAQ+EIALWFP
Sbjct:   15 ERQLIGEIISRIERKGLTIAALQLRTVSAELASQHYAEHEGKPFFGSLLEFITSGPVVAAIVEGTRAIAAVRQLAGGTDPVQAAAPGTIRGDFALETQFNLVHGSDSAESAQREIALWFP 134          
BLAST of CX299949 vs. ExPASy Swiss-Prot
Match: NDK_CHLSY (Nucleoside diphosphate kinase OS=Chloroflexus aurantiacus (strain ATCC 29364 / DSM 637 / Y-400-fl) GN=ndk PE=3 SV=1)

HSP 1 Score: 135.576 bits (340), Expect = 2.420e-31
Identity = 67/136 (49.26%), Postives = 89/136 (65.44%), Query Frame = 2
Query:   17 GLVGEIIIRFEKKGFSLKGLKLMTVDRPFAEKHYEDLSSKPFFGSLIEYITSGPVVAMIWEGE-GVVKTGRTIIGATNPAQSAPGTIRGDLAIVTGRNIIHGSDSVESAQKEIALWFPDGPI--NWQSSLHPWIYE 415
            GL+G II RFE++G   +GLKLM VD   A +HY +   K FF  L+ YITS PVV  +  G+ G V+  R ++GATNPA++APGTIRGD  +  GRN+IH SDS ES ++E A++F    +   W  +L  WIYE
Sbjct:   16 GLIGAIISRFEQRGLKFQGLKLMQVDEALARRHYAEHEGKSFFNGLVSYITSAPVVVAVVAGKPGTVELVRAMVGATNPAKAAPGTIRGDFGVDIGRNLIHASDSPESGERETAIFFQPHELIGEWNRALDNWIYE 151          
BLAST of CX299949 vs. ExPASy Swiss-Prot
Match: NDK_CHLAA (Nucleoside diphosphate kinase OS=Chloroflexus aurantiacus (strain ATCC 29366 / DSM 635 / J-10-fl) GN=ndk PE=3 SV=1)

HSP 1 Score: 135.576 bits (340), Expect = 2.420e-31
Identity = 67/136 (49.26%), Postives = 89/136 (65.44%), Query Frame = 2
Query:   17 GLVGEIIIRFEKKGFSLKGLKLMTVDRPFAEKHYEDLSSKPFFGSLIEYITSGPVVAMIWEGE-GVVKTGRTIIGATNPAQSAPGTIRGDLAIVTGRNIIHGSDSVESAQKEIALWFPDGPI--NWQSSLHPWIYE 415
            GL+G II RFE++G   +GLKLM VD   A +HY +   K FF  L+ YITS PVV  +  G+ G V+  R ++GATNPA++APGTIRGD  +  GRN+IH SDS ES ++E A++F    +   W  +L  WIYE
Sbjct:   16 GLIGAIISRFEQRGLKFQGLKLMQVDEALARRHYAEHEGKSFFNGLVSYITSAPVVVAVVAGKPGTVELVRAMVGATNPAKAAPGTIRGDFGVDIGRNLIHASDSPESGERETAIFFQPHELIGEWNRALDNWIYE 151          
BLAST of CX299949 vs. ExPASy Swiss-Prot
Match: NDK_ROSCS (Nucleoside diphosphate kinase OS=Roseiflexus castenholzii (strain DSM 13941 / HLO8) GN=ndk PE=3 SV=1)

HSP 1 Score: 135.191 bits (339), Expect = 3.161e-31
Identity = 65/134 (48.51%), Postives = 91/134 (67.91%), Query Frame = 2
Query:   17 GLVGEIIIRFEKKGFSLKGLKLMTVDRPFAEKHYEDLSSKPFFGSLIEYITSGPVVAMIWEGEGVVKTGRTIIGATNPAQSAPGTIRGDLAIVTGRNIIHGSDSVESAQKEIALWF-PDGPINWQSSLHPWIYE 415
            GL+G I+ R E++G  + GLKLM +D   A +HY     KPFF SLI YITSGPVV ++  G  V++  R+++GATNP ++APGTIRGD A+  GRN+IH SDS E+ + E+ L+F  +  ++ + S   WIYE
Sbjct:   16 GLIGPILTRIEQRGLRIVGLKLMQIDEALARRHYAIHEGKPFFDSLIAYITSGPVVVLVVTGANVIEMVRSMVGATNPGKAAPGTIRGDFALEIGRNLIHASDSPENGEMEVNLFFRAEELVDMRRSTDQWIYE 149          
BLAST of CX299949 vs. ExPASy Swiss-Prot
Match: NDK_DEIDV (Nucleoside diphosphate kinase OS=Deinococcus deserti (strain VCD115 / DSM 17065 / LMG 22923) GN=ndk PE=3 SV=1)

HSP 1 Score: 135.191 bits (339), Expect = 3.161e-31
Identity = 63/121 (52.07%), Postives = 84/121 (69.42%), Query Frame = 2
Query:   17 GLVGEIIIRFEKKGFSLKGLKLMTVDRPFAEKHYEDLSSKPFFGSLIEYITSGPVVAMIWEGEGVVKTGRTIIGATNPAQSAPGTIRGDLAIVTGRNIIHGSDSVESAQKEIALWFPDGPI 379
            GL  EI+ R  +KG+ + GLK M + R  AE HY +   +PFFG L+++IT GPVVA+  EGE  +   R ++GATNPA +APGTIR D A  TG N+ HGSDS ESAQ+E+AL+F +G +
Sbjct:   16 GLTPEILARIARKGYRVVGLKQMVIARETAENHYGEHRERPFFGELVDFITGGPVVAIALEGENAIAGWRAMMGATNPANAAPGTIRADFATTTGENVTHGSDSAESAQRELALFFQEGEL 136          
BLAST of CX299949 vs. ExPASy Swiss-Prot
Match: NDKM_COLLI (Nucleoside diphosphate kinase, mitochondrial OS=Columba livia GN=NME4 PE=1 SV=3)

HSP 1 Score: 135.191 bits (339), Expect = 3.161e-31
Identity = 61/125 (48.80%), Postives = 89/125 (71.20%), Query Frame = 2
Query:   20 LVGEIIIRFEKKGFSLKGLKLMTVDRPFAEKHYEDLSSKPFFGSLIEYITSGPVVAMIWEGEGVVKTGRTIIGATNPAQSAPGTIRGDLAIVTGRNIIHGSDSVESAQKEIALWFPDGP-INWQS 391
            LVG +I RFE++GF L  +KL+  D+   +KHY+ L  KPF+ +L+ Y+TSGP+VAM+WEG  VV++ R ++G T+ A +A GTIRGD ++   RN++H SDSVE+AQ+EI  WF     + W+S
Sbjct:   48 LVGNVIQRFERRGFKLVAMKLLQADQGLLDKHYQQLRQKPFYPALLAYMTSGPLVAMVWEGYNVVRSTRAMVGDTDSAVAAAGTIRGDFSMHVSRNVVHASDSVETAQREIGFWFQRNELVAWES 172          
BLAST of CX299949 vs. ExPASy Swiss-Prot
Match: NDK_ROSS1 (Nucleoside diphosphate kinase OS=Roseiflexus sp. (strain RS-1) GN=ndk PE=3 SV=1)

HSP 1 Score: 134.806 bits (338), Expect = 4.128e-31
Identity = 63/134 (47.01%), Postives = 91/134 (67.91%), Query Frame = 2
Query:   17 GLVGEIIIRFEKKGFSLKGLKLMTVDRPFAEKHYEDLSSKPFFGSLIEYITSGPVVAMIWEGEGVVKTGRTIIGATNPAQSAPGTIRGDLAIVTGRNIIHGSDSVESAQKEIALWF-PDGPINWQSSLHPWIYE 415
            GL+G I+ R E++G  + G+KLM +D   A +HY     K FF SLI YITSGPVV ++  G+ +++  R+++GATNP ++APGTIRGD A+  GRN+IH SDS E+ + E++L+F P+  +    S   WIYE
Sbjct:   16 GLIGPILTRIEQRGLRIVGMKLMQIDESLARRHYAIHEGKAFFDSLITYITSGPVVVLVVTGKNIIEIVRSMVGATNPVKAAPGTIRGDFALDIGRNLIHASDSPENGEMEVSLFFRPEELVEMHRSTDQWIYE 149          
BLAST of CX299949 vs. ExPASy Swiss-Prot
Match: NDK_RUBXD (Nucleoside diphosphate kinase OS=Rubrobacter xylanophilus (strain DSM 9941 / NBRC 16129) GN=ndk PE=3 SV=1)

HSP 1 Score: 134.42 bits (337), Expect = 5.392e-31
Identity = 64/115 (55.65%), Postives = 86/115 (74.78%), Query Frame = 2
Query:   20 LVGEIIIRFEKKGFSLKGLKLMTVDRPFAEKHYEDLSSKPFFGSLIEYITSGPVVAMIWEGEGVVKTGRTIIGATNPAQSAPGTIRGDLAIVTGRNIIHGSDSVESAQKEIALWF 364
            L+GEII R E KG +++ LK+M V R  AE+HY +   KPFFG L+E+ITS PVVAM  EGEG +   R ++GAT+PA++APGTIRGDLA+    N++HGSDS +SA +E+ L+F
Sbjct:   17 LIGEIIRRLENKGLAIRDLKMMRVSRELAEEHYAEHREKPFFGELVEFITSAPVVAMRVEGEGAIGVVRNLMGATDPAKAAPGTIRGDLALSMPDNLVHGSDSPQSAARELRLFF 131          
BLAST of CX299949 vs. ExPASy Swiss-Prot
Match: NDK_PYRFU (Nucleoside diphosphate kinase OS=Pyrococcus furiosus GN=ndk PE=3 SV=1)

HSP 1 Score: 134.035 bits (336), Expect = 7.042e-31
Identity = 68/135 (50.37%), Postives = 88/135 (65.19%), Query Frame = 2
Query:   17 GLVGEIIIRFEKKGFSLKGLKLMTVDRPFAEKHYEDLSSKPFFGSLIEYITSGPVVAMIWEGEGVVKTGRTIIGATNPAQSAPGTIRGDLAIVTG---RNIIHGSDSVESAQKEIALWFPDGPINWQSSLHPWIY 412
            GL+GEII RFEKKG  + G+K++ +DR  AEKHYE+   KPFF +LI+YIT  PVV M+ EG   V+  R + GAT+P  +APGTIRGD  +  G    N+IH SDS ESA++EI+L+F    I        W Y
Sbjct:   19 GLIGEIISRFEKKGLKIVGMKMIWIDRELAEKHYEEHKGKPFFEALIDYITKAPVVVMVVEGRYAVEVVRKMAGATDPKDAAPGTIRGDYGLDIGDAIYNVIHASDSKESAEREISLYFKPEEIYEYCKAADWFY 153          
The following BLAST results are available for this feature:
BLAST of CX299949 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
NDK_MYCBP1.853e-3156.67Nucleoside diphosphate kinase OS=Mycobacterium bov... [more]
NDK_MYCBO1.853e-3156.67Nucleoside diphosphate kinase OS=Mycobacterium bov... [more]
NDK_CHLSY2.420e-3149.26Nucleoside diphosphate kinase OS=Chloroflexus aura... [more]
NDK_CHLAA2.420e-3149.26Nucleoside diphosphate kinase OS=Chloroflexus aura... [more]
NDK_ROSCS3.161e-3148.51Nucleoside diphosphate kinase OS=Roseiflexus caste... [more]
NDK_DEIDV3.161e-3152.07Nucleoside diphosphate kinase OS=Deinococcus deser... [more]
NDKM_COLLI3.161e-3148.80Nucleoside diphosphate kinase, mitochondrial OS=Co... [more]
NDK_ROSS14.128e-3147.01Nucleoside diphosphate kinase OS=Roseiflexus sp. (... [more]
NDK_RUBXD5.392e-3155.65Nucleoside diphosphate kinase OS=Rubrobacter xylan... [more]
NDK_PYRFU7.042e-3150.37Nucleoside diphosphate kinase OS=Pyrococcus furios... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionC07004D02SK SaltLeaf1 Citrus clementina cDNA clone C07004D02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX299949 ID=CX299949; Name=CX299949; organism=Citrus clementina; type=EST; length=686bp
AATTCGGCACGAGGGAGGCCTTGTTGGTGAAATCATCATCAGATTTGAGA
AGAAGGGTTTCTCCTTGAAGGGTTTGAAGCTTATGACTGTGGACCGCCCT
TTTGCTGAGAAGCACTATGAGGATTTGTCATCGAAGCCTTTCTTTGGTTC
TCTGATTGAGTACATTACCTCTGGTCCTGTTGTTGCTATGATTTGGGAGG
GTGAAGGTGTTGTTAAGACTGGCCGCACTATTATTGGAGCCACCAACCCT
GCGCAGTCTGCTCCTGGAACCATCCGTGGTGATTTGGCTATCGTGACGGG
CAGGAATATCATCCATGGAAGTGACTCAGTTGAGAGTGCCCAGAAAGAAA
TCGCCTTGTGGTTCCCTGATGGCCCTATTAACTGGCAGAGCAGCCTTCAC
CCTTGGATCTATGAGTAAACTAATGTTTGGTTGAGGAGCCTAATTGTTCC
TGCAGTTAGACTTATCCCTATCCCTATCCCTATTTCCTTATTTATGGTTA
CTCCTTGTTGGTGAACTGTTATGAAGTATTGAGTTAAATTGAGACCAATC
CTGGTTATGTTGGCTGCTTTCATTCTTGTGGTTGCCATATACAATATTTA
AGCTTTTTTGTTGACTGTATTATGAATTGAGTTTGTTAATGGTTAGCACA
TGATGGTTGCACTTTTTAAAAAAAAAAAAAAAAAAA
back to top