CX299949

Overview
NameCX299949
Unique NameCX299949
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length686
Libraries
Library NameType
SaltLeaf1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX299949 vs. ExPASy Swiss-Prot
Match: NDK_DEIGD (Nucleoside diphosphate kinase OS=Deinococcus geothermalis (strain DSM 11300) GN=ndk PE=3 SV=2)

HSP 1 Score: 134.035 bits (336), Expect = 7.042e-31
Identity = 62/116 (53.45%), Postives = 83/116 (71.55%), Query Frame = 2
Query:   17 GLVGEIIIRFEKKGFSLKGLKLMTVDRPFAEKHYEDLSSKPFFGSLIEYITSGPVVAMIWEGEGVVKTGRTIIGATNPAQSAPGTIRGDLAIVTGRNIIHGSDSVESAQKEIALWF 364
            GL  EI+ R +KKG+ + GLK M + R  AE+HY +   +PFFG L+++ITSGPVVA+  EGE  +   R ++GATNPA +APGTIR D A  TG N+ HGSDS ESA +E++L+F
Sbjct:   16 GLTPEILARIQKKGYRVVGLKQMLISRELAERHYAEHRERPFFGELVDFITSGPVVAIALEGENAIAGWRAMMGATNPANAAPGTIRADFATTTGENVTHGSDSPESAARELSLFF 131          
BLAST of CX299949 vs. ExPASy Swiss-Prot
Match: NDK_METS3 (Nucleoside diphosphate kinase OS=Methanobrevibacter smithii (strain PS / ATCC 35061 / DSM 861) GN=ndk PE=3 SV=1)

HSP 1 Score: 133.65 bits (335), Expect = 9.197e-31
Identity = 65/120 (54.17%), Postives = 88/120 (73.33%), Query Frame = 2
Query:   20 LVGEIIIRFEKKGFSLKGLKLMTVDRPFAEKHYEDLSSKPFFGSLIEYITSGPVVAMIWEGEGVVKTGRTIIGATNPAQSAPGTIRGDLAIVTGRNIIHGSDSVESAQKEIALWFPDGPI 379
            L+G+I+ RFE+KG  +  +KLM +D   A+ HY + + KPFFGSLIEYITS P +AM+ EGE  + T R ++GATNP ++  GTIRGD A+ TGRNIIH SDS +SA++EI L+F +  I
Sbjct:   18 LMGKILSRFEEKGLQIVAVKLMQIDEDLAKTHYGEHADKPFFGSLIEYITSSPSLAMVIEGEEAISTIRKLVGATNPLEADLGTIRGDFAMDTGRNIIHASDSPDSAEREINLFFNEDEI 137          
BLAST of CX299949 vs. ExPASy Swiss-Prot
Match: NDK_METBU (Nucleoside diphosphate kinase OS=Methanococcoides burtonii (strain DSM 6242) GN=ndk PE=3 SV=1)

HSP 1 Score: 133.65 bits (335), Expect = 9.197e-31
Identity = 63/133 (47.37%), Postives = 91/133 (68.42%), Query Frame = 2
Query:   20 LVGEIIIRFEKKGFSLKGLKLMTVDRPFAEKHYEDLSSKPFFGSLIEYITSGPVVAMIWEGEGVVKTGRTIIGATNPAQSAPGTIRGDLAIVTGRNIIHGSDSVESAQKEIALWFPDGPIN-WQSSLHPWIYE 415
            LVGEI+ R EKKG  +  L++  +    A++HY++ S +PFFGSL+ ++TSGP V+M+ EG   +K  R I GATNP  + PGTIRGDLA+  GRN++H SD+ ESA++EI L F +  I+ +  +   W+YE
Sbjct:   17 LVGEIVSRIEKKGLKIAALRMNVMTEAAAKEHYKEHSERPFFGSLVSFVTSGPSVSMVIEGNNAIKIMRAINGATNPVDALPGTIRGDLAVDMGRNVVHASDAPESAEREIGLHFEESEISGYPRADDEWLYE 149          
BLAST of CX299949 vs. ExPASy Swiss-Prot
Match: NDK_LISW6 (Nucleoside diphosphate kinase OS=Listeria welshimeri serovar 6b (strain ATCC 35897 / DSM 20650 / SLCC5334) GN=ndk PE=3 SV=1)

HSP 1 Score: 133.65 bits (335), Expect = 9.197e-31
Identity = 65/134 (48.51%), Postives = 93/134 (69.40%), Query Frame = 2
Query:   11 EGGLVGEIIIRFEKKGFSLKGLKLMTVDRPFAEKHYEDLSSKPFFGSLIEYITSGPVVAMIWEGEGVVKTGRTIIGATNPAQSAPGTIRGDLAIVTGRNIIHGSDSVESAQKEIALWF-PDGPINWQSSLHPWI 409
            E GL+GEI+ + EKKG  L   KL+ +DR  AE+HY +   KPFF  LI +ITSGPV AM+ EG+ V+K  R ++G TNP ++  GTIR + A+ T RN+IHGSDS ESA++EI L+F P   ++++ ++  W+
Sbjct:   14 ERGLIGEIVAKIEKKGIKLVAGKLIQIDRKLAEQHYAEHIGKPFFEDLIGFITSGPVFAMVLEGDDVIKIARRMMGKTNPLEADAGTIRAEYAVHTNRNVIHGSDSPESAKREIQLFFEPHEILSYEKAVDIWV 147          
BLAST of CX299949 vs. ExPASy Swiss-Prot
Match: NDK_MYCSS (Nucleoside diphosphate kinase OS=Mycobacterium sp. (strain MCS) GN=ndk PE=3 SV=2)

HSP 1 Score: 133.265 bits (334), Expect = 1.201e-30
Identity = 68/117 (58.12%), Postives = 83/117 (70.94%), Query Frame = 2
Query:   20 LVGEIIIRFEKKGFSLKGLKLMTVDRPFAEKHYEDLSSKPFFGSLIEYITSGPVVAMIWEGEGVVKTGRTIIGATNPAQSA-PGTIRGDLAIVTGRNIIHGSDSVESAQKEIALWFP 367
            LVGEI+ R E+KG +L  L+L TVD   A +HY +   KPFFGSL+E+ITSGPVVA I EG   +   R I G T+P + A PGTIR DLA+VT  N++HGSDS ESA +EI LWFP
Sbjct:   18 LVGEILGRIERKGLTLAALELKTVDDELARRHYAEHEGKPFFGSLLEFITSGPVVAAIVEGPRAIAAFRQIAGGTDPVEKATPGTIRADLALVTQDNLVHGSDSPESAAREIDLWFP 134          
BLAST of CX299949 vs. ExPASy Swiss-Prot
Match: NDK_DEIRA (Nucleoside diphosphate kinase OS=Deinococcus radiodurans GN=ndk PE=3 SV=2)

HSP 1 Score: 132.88 bits (333), Expect = 1.569e-30
Identity = 63/121 (52.07%), Postives = 84/121 (69.42%), Query Frame = 2
Query:   17 GLVGEIIIRFEKKGFSLKGLKLMTVDRPFAEKHYEDLSSKPFFGSLIEYITSGPVVAMIWEGEGVVKTGRTIIGATNPAQSAPGTIRGDLAIVTGRNIIHGSDSVESAQKEIALWFPDGPI 379
            GL  EI+ R   KG+ + GLK M + R  AE+HY +   +PFFG L+++IT GPVVA+  EGE  +   R ++GATNPA +APGTIR D A  TG N+ HGSDS ESA++E+AL+F DG +
Sbjct:   16 GLTPEILARIHNKGYRVVGLKQMMMPRETAEQHYGEHRERPFFGELVDFITGGPVVAIALEGENAIAGWRAMMGATNPANAAPGTIRADFATSTGENVTHGSDSPESAERELALFFGDGEL 136          
BLAST of CX299949 vs. ExPASy Swiss-Prot
Match: NDK_MYCLE (Nucleoside diphosphate kinase OS=Mycobacterium leprae GN=ndk PE=3 SV=1)

HSP 1 Score: 132.494 bits (332), Expect = 2.049e-30
Identity = 67/120 (55.83%), Postives = 85/120 (70.83%), Query Frame = 2
Query:   11 EGGLVGEIIIRFEKKGFSLKGLKLMTVDRPFAEKHYEDLSSKPFFGSLIEYITSGPVVAMIWEGEGVVKTGRTIIGATNPAQ-SAPGTIRGDLAIVTGRNIIHGSDSVESAQKEIALWFP 367
            E  L+GEII R E+KG ++  L+L  V    A +HY +  SKPFFGSL+E+ITSGPV+A I EG   V   R + G T+P + +APGTIRGDLA+ T  N++HGSDS  SAQ+EIALWFP
Sbjct:   15 ERQLIGEIISRIERKGLTIAALELRQVGEELASQHYAEHESKPFFGSLLEFITSGPVMAAIVEGPRAVAAVRQLTGGTDPVEKAAPGTIRGDLALETQFNLVHGSDSTASAQREIALWFP 134          
BLAST of CX299949 vs. ExPASy Swiss-Prot
Match: NDK_MYCLB (Nucleoside diphosphate kinase OS=Mycobacterium leprae (strain Br4923) GN=ndk PE=3 SV=1)

HSP 1 Score: 132.494 bits (332), Expect = 2.049e-30
Identity = 67/120 (55.83%), Postives = 85/120 (70.83%), Query Frame = 2
Query:   11 EGGLVGEIIIRFEKKGFSLKGLKLMTVDRPFAEKHYEDLSSKPFFGSLIEYITSGPVVAMIWEGEGVVKTGRTIIGATNPAQ-SAPGTIRGDLAIVTGRNIIHGSDSVESAQKEIALWFP 367
            E  L+GEII R E+KG ++  L+L  V    A +HY +  SKPFFGSL+E+ITSGPV+A I EG   V   R + G T+P + +APGTIRGDLA+ T  N++HGSDS  SAQ+EIALWFP
Sbjct:   15 ERQLIGEIISRIERKGLTIAALELRQVGEELASQHYAEHESKPFFGSLLEFITSGPVMAAIVEGPRAVAAVRQLTGGTDPVEKAAPGTIRGDLALETQFNLVHGSDSTASAQREIALWFP 134          
BLAST of CX299949 vs. ExPASy Swiss-Prot
Match: NDK_THERP (Nucleoside diphosphate kinase OS=Thermomicrobium roseum (strain ATCC 27502 / DSM 5159 / P-2) GN=ndk PE=3 SV=1)

HSP 1 Score: 132.109 bits (331), Expect = 2.676e-30
Identity = 65/132 (49.24%), Postives = 90/132 (68.18%), Query Frame = 2
Query:   17 GLVGEIIIRFEKKGFSLKGLKLMTVDRPFAEKHYEDLSSKPFFGSLIEYITSGPVVAMIWEGEGVVKTGRTIIGATNPAQSAPGTIRGDLAIVTGRNIIHGSDSVESAQKEIALWF-PDGPINWQSSLHPWI 409
            GLVGE++ R E++G    GLKLM VDR  AE+HY +   KPF+  L+ +ITSGPVV  + EG   ++  R  +G T+PAQ+ PGTIRGDLA+  G+N+IHGSDS E A  EI L+F  D  ++++ ++  WI
Sbjct:   16 GLVGEVLRRLEQRGLRFVGLKLMKVDREVAERHYAEHRGKPFYEDLLAFITSGPVVVGVVEGPRAIEITRKTMGKTDPAQAEPGTIRGDLALTIGQNVIHGSDSPEKASYEIGLFFREDELVSYERAIDRWI 147          
BLAST of CX299949 vs. ExPASy Swiss-Prot
Match: NDK_MYCS2 (Nucleoside diphosphate kinase OS=Mycobacterium smegmatis GN=ndk PE=3 SV=1)

HSP 1 Score: 131.724 bits (330), Expect = 3.495e-30
Identity = 66/117 (56.41%), Postives = 83/117 (70.94%), Query Frame = 2
Query:   20 LVGEIIIRFEKKGFSLKGLKLMTVDRPFAEKHYEDLSSKPFFGSLIEYITSGPVVAMIWEGEGVVKTGRTIIGATNPAQSA-PGTIRGDLAIVTGRNIIHGSDSVESAQKEIALWFP 367
            LVGEI+ R E+KG +L  L+L  V    A +HY + + KPFFGSL+E+ITSGP+VA I EG   V   R I G T+P + A PGTIRGD A++T  N++HGSDS ESA +EIALWFP
Sbjct:   18 LVGEILSRIERKGLTLAALELKNVSDDLARQHYAEHADKPFFGSLLEFITSGPLVAAIVEGPRAVAAFRQIAGGTDPVEKAVPGTIRGDFALITQDNLVHGSDSPESAAREIALWFP 134          
The following BLAST results are available for this feature:
BLAST of CX299949 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
NDK_DEIGD7.042e-3153.45Nucleoside diphosphate kinase OS=Deinococcus geoth... [more]
NDK_METS39.197e-3154.17Nucleoside diphosphate kinase OS=Methanobrevibacte... [more]
NDK_METBU9.197e-3147.37Nucleoside diphosphate kinase OS=Methanococcoides ... [more]
NDK_LISW69.197e-3148.51Nucleoside diphosphate kinase OS=Listeria welshime... [more]
NDK_MYCSS1.201e-3058.12Nucleoside diphosphate kinase OS=Mycobacterium sp.... [more]
NDK_DEIRA1.569e-3052.07Nucleoside diphosphate kinase OS=Deinococcus radio... [more]
NDK_MYCLE2.049e-3055.83Nucleoside diphosphate kinase OS=Mycobacterium lep... [more]
NDK_MYCLB2.049e-3055.83Nucleoside diphosphate kinase OS=Mycobacterium lep... [more]
NDK_THERP2.676e-3049.24Nucleoside diphosphate kinase OS=Thermomicrobium r... [more]
NDK_MYCS23.495e-3056.41Nucleoside diphosphate kinase OS=Mycobacterium sme... [more]

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Properties
Property NameValue
Genbank descriptionC07004D02SK SaltLeaf1 Citrus clementina cDNA clone C07004D02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX299949 ID=CX299949; Name=CX299949; organism=Citrus clementina; type=EST; length=686bp
AATTCGGCACGAGGGAGGCCTTGTTGGTGAAATCATCATCAGATTTGAGA
AGAAGGGTTTCTCCTTGAAGGGTTTGAAGCTTATGACTGTGGACCGCCCT
TTTGCTGAGAAGCACTATGAGGATTTGTCATCGAAGCCTTTCTTTGGTTC
TCTGATTGAGTACATTACCTCTGGTCCTGTTGTTGCTATGATTTGGGAGG
GTGAAGGTGTTGTTAAGACTGGCCGCACTATTATTGGAGCCACCAACCCT
GCGCAGTCTGCTCCTGGAACCATCCGTGGTGATTTGGCTATCGTGACGGG
CAGGAATATCATCCATGGAAGTGACTCAGTTGAGAGTGCCCAGAAAGAAA
TCGCCTTGTGGTTCCCTGATGGCCCTATTAACTGGCAGAGCAGCCTTCAC
CCTTGGATCTATGAGTAAACTAATGTTTGGTTGAGGAGCCTAATTGTTCC
TGCAGTTAGACTTATCCCTATCCCTATCCCTATTTCCTTATTTATGGTTA
CTCCTTGTTGGTGAACTGTTATGAAGTATTGAGTTAAATTGAGACCAATC
CTGGTTATGTTGGCTGCTTTCATTCTTGTGGTTGCCATATACAATATTTA
AGCTTTTTTGTTGACTGTATTATGAATTGAGTTTGTTAATGGTTAGCACA
TGATGGTTGCACTTTTTAAAAAAAAAAAAAAAAAAA
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