CX299949

Overview
NameCX299949
Unique NameCX299949
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length686
Libraries
Library NameType
SaltLeaf1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX299949 vs. ExPASy Swiss-Prot
Match: NDK_METAC (Nucleoside diphosphate kinase OS=Methanosarcina acetivorans GN=ndk PE=3 SV=2)

HSP 1 Score: 128.642 bits (322), Expect = 2.959e-29
Identity = 61/121 (50.41%), Postives = 85/121 (70.25%), Query Frame = 2
Query:   17 GLVGEIIIRFEKKGFSLKGLKLMTVDRPFAEKHYEDLSSKPFFGSLIEYITSGPVVAMIWEGEGVVKTGRTIIGATNPAQSAPGTIRGDLAIVTGRNIIHGSDSVESAQKEIALWFPDGPI 379
            GLVGE+I R EK+G  +  L++  +    A++HY + +++PFF SLIE+ITSGP V+M+  G+  +K  R I GATNP  +APGTIRGD A+  GRN++H SDS E+A +EIA+ F D  I
Sbjct:   16 GLVGEVISRIEKRGLKILALRMNVIAEATAKEHYGEHAARPFFPSLIEFITSGPSVSMVVAGKDAIKVMRAINGATNPVDAAPGTIRGDFALDVGRNVVHASDSPEAAAREIAIHFKDSEI 136          
BLAST of CX299949 vs. ExPASy Swiss-Prot
Match: NDK_MYCA9 (Nucleoside diphosphate kinase OS=Mycobacterium abscessus (strain ATCC 19977 / DSM 44196) GN=ndk PE=3 SV=1)

HSP 1 Score: 128.257 bits (321), Expect = 3.864e-29
Identity = 63/118 (53.39%), Postives = 83/118 (70.34%), Query Frame = 2
Query:   17 GLVGEIIIRFEKKGFSLKGLKLMTVDRPFAEKHYEDLSSKPFFGSLIEYITSGPVVAMIWEGEGVVKTGRTIIGATNPAQ-SAPGTIRGDLAIVTGRNIIHGSDSVESAQKEIALWFP 367
            GLVGE++ R E+KG +L  L+L  VD   A  HY + + KPFFGSL+E+ITSGP+VA + EG   +   R I G T+P + +A G+IRGD A+ T  N++HGSDS ESA +EIALWFP
Sbjct:   17 GLVGEVLNRIERKGLTLAALELKNVDDATARAHYAEHAEKPFFGSLLEFITSGPLVAAVLEGPRAIAAFRQIAGGTDPVEKAATGSIRGDFALETQENLVHGSDSPESAAREIALWFP 134          
BLAST of CX299949 vs. ExPASy Swiss-Prot
Match: NDK_MOOTA (Nucleoside diphosphate kinase OS=Moorella thermoacetica (strain ATCC 39073) GN=ndk PE=3 SV=1)

HSP 1 Score: 127.872 bits (320), Expect = 5.047e-29
Identity = 64/124 (51.61%), Postives = 87/124 (70.16%), Query Frame = 2
Query:    2 IRHEG---GLVGEIIIRFEKKGFSLKGLKLMTVDRPFAEKHYEDLSSKPFFGSLIEYITSGPVVAMIWEGEGVVKTGRTIIGATNPAQSAPGTIRGDLAIVTGRNIIHGSDSVESAQKEIALWF 364
            I+ EG   GLVG I+ R E+KG+ +  LK++ +    A  HY +   KPF+  LI +ITSGPVVAM+ EG GV+   R ++GATNP ++APGTIRGD A+ T  N+IHG+DS  SA++EIAL+F
Sbjct:   10 IKPEGVRRGLVGAILARLEQKGYRIVALKMLRLTPEMAAAHYAEHRDKPFYQDLINHITSGPVVAMVLEGPGVIAGLRRLMGATNPQEAAPGTIRGDFALETSDNVIHGADSPASAEREIALYF 133          
BLAST of CX299949 vs. ExPASy Swiss-Prot
Match: NDK_METBF (Nucleoside diphosphate kinase OS=Methanosarcina barkeri (strain Fusaro / DSM 804) GN=ndk PE=3 SV=1)

HSP 1 Score: 127.872 bits (320), Expect = 5.047e-29
Identity = 59/121 (48.76%), Postives = 84/121 (69.42%), Query Frame = 2
Query:   17 GLVGEIIIRFEKKGFSLKGLKLMTVDRPFAEKHYEDLSSKPFFGSLIEYITSGPVVAMIWEGEGVVKTGRTIIGATNPAQSAPGTIRGDLAIVTGRNIIHGSDSVESAQKEIALWFPDGPI 379
            GLVGEII R EK+G  +  L++  +    A++HY + ++KPFF  L+ +ITSGP V+M+ EG+  ++  R I GATNP  +APGT+RGD A+  GRN++H SDS E+A +EIA+ F D  I
Sbjct:   16 GLVGEIISRIEKRGLKIVALRMNVISEATAKEHYSEHAAKPFFPGLVGFITSGPSVSMVVEGKDAIRVMRAINGATNPVDAAPGTVRGDFALDVGRNVVHASDSPEAAAREIAIHFKDSEI 136          
BLAST of CX299949 vs. ExPASy Swiss-Prot
Match: NDK_THEFY (Nucleoside diphosphate kinase OS=Thermobifida fusca (strain YX) GN=ndk PE=3 SV=1)

HSP 1 Score: 127.487 bits (319), Expect = 6.591e-29
Identity = 58/117 (49.57%), Postives = 83/117 (70.94%), Query Frame = 2
Query:   20 LVGEIIIRFEKKGFSLKGLKLMTVDRPFAEKHYEDLSSKPFFGSLIEYITSGPVVAMIWEGEGVVKTGRTIIGATNPAQSAPGTIRGDLAIVTGRNIIHGSDSVESAQKEIALWFPD 370
            ++GE+I R E+KG  +  ++L T+D   A+ HYE+   KPFF SL+E+IT GP+VAM+ EG   ++  R++ GAT+P  +APGTIRGD  +    NI+HGSDS  SA++EI L+FPD
Sbjct:   17 IIGEVISRIERKGLKIVAMELRTLDEETAKAHYEEHVEKPFFSSLVEFITGGPLVAMVVEGNRAIEAFRSLAGATDPVLAAPGTIRGDYGLDVQANIVHGSDSTYSAEREIKLFFPD 133          
BLAST of CX299949 vs. ExPASy Swiss-Prot
Match: NDK_METST (Nucleoside diphosphate kinase OS=Methanosphaera stadtmanae (strain DSM 3091) GN=ndk PE=3 SV=1)

HSP 1 Score: 127.487 bits (319), Expect = 6.591e-29
Identity = 62/117 (52.99%), Postives = 80/117 (68.38%), Query Frame = 2
Query:   20 LVGEIIIRFEKKGFSLKGLKLMTVDRPFAEKHYEDLSSKPFFGSLIEYITSGPVVAMIWEGEGVVKTGRTIIGATNPAQSAPGTIRGDLAIVTGRNIIHGSDSVESAQKEIALWFPD 370
            L GEI+ RFEK+G  +   K + +    A+ HY + S KPFF  LI YITSGPV AM+ EG+ V+   R ++GATNP ++  GTIRGD  I TGRNI+H SDS ESAQ+EI L+F +
Sbjct:   18 LTGEILTRFEKRGLKVIAAKTLMISEDLAKTHYGEHSDKPFFNDLISYITSGPVFAMVLEGDDVISLVRKMVGATNPKEADIGTIRGDYGIDTGRNIVHASDSEESAQREINLFFDE 134          
BLAST of CX299949 vs. ExPASy Swiss-Prot
Match: NDK_SULSO (Nucleoside diphosphate kinase OS=Sulfolobus solfataricus GN=ndk PE=3 SV=1)

HSP 1 Score: 127.102 bits (318), Expect = 8.608e-29
Identity = 60/116 (51.72%), Postives = 83/116 (71.55%), Query Frame = 2
Query:   17 GLVGEIIIRFEKKGFSLKGLKLMTVDRPFAEKHYEDLSSKPFFGSLIEYITSGPVVAMIWEGEGVVKTGRTIIGATNPAQSAPGTIRGDLAIVTGRNIIHGSDSVESAQKEIALWF 364
            GL+GEII RFEK+G  +  LK++ + R  AEK YE+   K FF  L+ Y+TSGPVV M+ EG+ VV+  R +IG T+P ++ PGTIRGD A+    N+IH SDS+E AQ+E++L+F
Sbjct:   18 GLIGEIISRFEKRGLKIVSLKMVKMSRDTAEKLYEEHKGKSFFEELVNYVTSGPVVCMVIEGDDVVQVIRRMIGNTDPKEAPPGTIRGDYALSKSENVIHASDSIEKAQREMSLFF 133          
BLAST of CX299949 vs. ExPASy Swiss-Prot
Match: NDK_SULTO (Nucleoside diphosphate kinase OS=Sulfolobus tokodaii GN=ndk PE=3 SV=2)

HSP 1 Score: 126.716 bits (317), Expect = 1.124e-28
Identity = 60/117 (51.28%), Postives = 83/117 (70.94%), Query Frame = 2
Query:   20 LVGEIIIRFEKKGFSLKGLKLMTVDRPFAEKHYEDLSSKPFFGSLIEYITSGPVVAMIWEGEGVVKTGRTIIGATNPAQSAPGTIRGDLAIVTGRNIIHGSDSVESAQKEIALWFPD 370
            L+GEII RFEK+G  + GLK++ +DRP AE+ YE+   K FF  LI YITSGPVV M+ EG+  V   R +IG T+P ++ PGTIRGD A+    N+IH SDS E A++E++++F +
Sbjct:   19 LIGEIISRFEKRGLKIIGLKMVKIDRPTAERLYEEHKGKSFFEELISYITSGPVVCMVIEGDEAVSVVRKMIGNTDPKEAPPGTIRGDYALSKAENVIHASDSEEKAKREMSIFFKE 135          
BLAST of CX299949 vs. ExPASy Swiss-Prot
Match: NDK_SULIY (Nucleoside diphosphate kinase OS=Sulfolobus islandicus (strain Y.G.57.14 / Yellowstone #1) GN=ndk PE=3 SV=1)

HSP 1 Score: 126.716 bits (317), Expect = 1.124e-28
Identity = 59/116 (50.86%), Postives = 83/116 (71.55%), Query Frame = 2
Query:   17 GLVGEIIIRFEKKGFSLKGLKLMTVDRPFAEKHYEDLSSKPFFGSLIEYITSGPVVAMIWEGEGVVKTGRTIIGATNPAQSAPGTIRGDLAIVTGRNIIHGSDSVESAQKEIALWF 364
            GL+GEII RFEK+G  +  LK++ + R  AEK Y++   K FF  L+ Y+TSGPVV M+ EG+ VV+  R +IG T+P ++ PGTIRGD A+    N+IH SDS+E AQ+E++L+F
Sbjct:   18 GLIGEIISRFEKRGLKIVSLKMVKMSRDIAEKLYDEHKGKSFFEELVNYVTSGPVVCMVIEGDDVVQVIRRMIGNTDPKEAPPGTIRGDYALSKSENVIHASDSIEKAQREMSLFF 133          
BLAST of CX299949 vs. ExPASy Swiss-Prot
Match: NDK_SULIN (Nucleoside diphosphate kinase OS=Sulfolobus islandicus (strain Y.N.15.51 / Yellowstone #2) GN=ndk PE=3 SV=1)

HSP 1 Score: 126.716 bits (317), Expect = 1.124e-28
Identity = 59/116 (50.86%), Postives = 83/116 (71.55%), Query Frame = 2
Query:   17 GLVGEIIIRFEKKGFSLKGLKLMTVDRPFAEKHYEDLSSKPFFGSLIEYITSGPVVAMIWEGEGVVKTGRTIIGATNPAQSAPGTIRGDLAIVTGRNIIHGSDSVESAQKEIALWF 364
            GL+GEII RFEK+G  +  LK++ + R  AEK Y++   K FF  L+ Y+TSGPVV M+ EG+ VV+  R +IG T+P ++ PGTIRGD A+    N+IH SDS+E AQ+E++L+F
Sbjct:   18 GLIGEIISRFEKRGLKIVSLKMVKMSRDIAEKLYDEHKGKSFFEELVNYVTSGPVVCMVIEGDDVVQVIRRMIGNTDPKEAPPGTIRGDYALSKSENVIHASDSIEKAQREMSLFF 133          
The following BLAST results are available for this feature:
BLAST of CX299949 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
NDK_METAC2.959e-2950.41Nucleoside diphosphate kinase OS=Methanosarcina ac... [more]
NDK_MYCA93.864e-2953.39Nucleoside diphosphate kinase OS=Mycobacterium abs... [more]
NDK_MOOTA5.047e-2951.61Nucleoside diphosphate kinase OS=Moorella thermoac... [more]
NDK_METBF5.047e-2948.76Nucleoside diphosphate kinase OS=Methanosarcina ba... [more]
NDK_THEFY6.591e-2949.57Nucleoside diphosphate kinase OS=Thermobifida fusc... [more]
NDK_METST6.591e-2952.99Nucleoside diphosphate kinase OS=Methanosphaera st... [more]
NDK_SULSO8.608e-2951.72Nucleoside diphosphate kinase OS=Sulfolobus solfat... [more]
NDK_SULTO1.124e-2851.28Nucleoside diphosphate kinase OS=Sulfolobus tokoda... [more]
NDK_SULIY1.124e-2850.86Nucleoside diphosphate kinase OS=Sulfolobus island... [more]
NDK_SULIN1.124e-2850.86Nucleoside diphosphate kinase OS=Sulfolobus island... [more]

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Properties
Property NameValue
Genbank descriptionC07004D02SK SaltLeaf1 Citrus clementina cDNA clone C07004D02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX299949 ID=CX299949; Name=CX299949; organism=Citrus clementina; type=EST; length=686bp
AATTCGGCACGAGGGAGGCCTTGTTGGTGAAATCATCATCAGATTTGAGA
AGAAGGGTTTCTCCTTGAAGGGTTTGAAGCTTATGACTGTGGACCGCCCT
TTTGCTGAGAAGCACTATGAGGATTTGTCATCGAAGCCTTTCTTTGGTTC
TCTGATTGAGTACATTACCTCTGGTCCTGTTGTTGCTATGATTTGGGAGG
GTGAAGGTGTTGTTAAGACTGGCCGCACTATTATTGGAGCCACCAACCCT
GCGCAGTCTGCTCCTGGAACCATCCGTGGTGATTTGGCTATCGTGACGGG
CAGGAATATCATCCATGGAAGTGACTCAGTTGAGAGTGCCCAGAAAGAAA
TCGCCTTGTGGTTCCCTGATGGCCCTATTAACTGGCAGAGCAGCCTTCAC
CCTTGGATCTATGAGTAAACTAATGTTTGGTTGAGGAGCCTAATTGTTCC
TGCAGTTAGACTTATCCCTATCCCTATCCCTATTTCCTTATTTATGGTTA
CTCCTTGTTGGTGAACTGTTATGAAGTATTGAGTTAAATTGAGACCAATC
CTGGTTATGTTGGCTGCTTTCATTCTTGTGGTTGCCATATACAATATTTA
AGCTTTTTTGTTGACTGTATTATGAATTGAGTTTGTTAATGGTTAGCACA
TGATGGTTGCACTTTTTAAAAAAAAAAAAAAAAAAA
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