CX299949

Overview
NameCX299949
Unique NameCX299949
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length686
Libraries
Library NameType
SaltLeaf1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX299949 vs. ExPASy Swiss-Prot
Match: NDK_SULIM (Nucleoside diphosphate kinase OS=Sulfolobus islandicus (strain M.14.25 / Kamchatka #1) GN=ndk PE=3 SV=1)

HSP 1 Score: 126.716 bits (317), Expect = 1.124e-28
Identity = 59/116 (50.86%), Postives = 83/116 (71.55%), Query Frame = 2
Query:   17 GLVGEIIIRFEKKGFSLKGLKLMTVDRPFAEKHYEDLSSKPFFGSLIEYITSGPVVAMIWEGEGVVKTGRTIIGATNPAQSAPGTIRGDLAIVTGRNIIHGSDSVESAQKEIALWF 364
            GL+GEII RFEK+G  +  LK++ + R  AEK Y++   K FF  L+ Y+TSGPVV M+ EG+ VV+  R +IG T+P ++ PGTIRGD A+    N+IH SDS+E AQ+E++L+F
Sbjct:   18 GLIGEIISRFEKRGLKIVSLKMVKMSRDIAEKLYDEHKGKSFFEELVNYVTSGPVVCMVIEGDDVVQVIRRMIGNTDPKEAPPGTIRGDYALSKSENVIHASDSIEKAQREMSLFF 133          
BLAST of CX299949 vs. ExPASy Swiss-Prot
Match: NDK_SULIL (Nucleoside diphosphate kinase OS=Sulfolobus islandicus (strain L.S.2.15 / Lassen #1) GN=ndk PE=3 SV=1)

HSP 1 Score: 126.716 bits (317), Expect = 1.124e-28
Identity = 59/116 (50.86%), Postives = 83/116 (71.55%), Query Frame = 2
Query:   17 GLVGEIIIRFEKKGFSLKGLKLMTVDRPFAEKHYEDLSSKPFFGSLIEYITSGPVVAMIWEGEGVVKTGRTIIGATNPAQSAPGTIRGDLAIVTGRNIIHGSDSVESAQKEIALWF 364
            GL+GEII RFEK+G  +  LK++ + R  AEK Y++   K FF  L+ Y+TSGPVV M+ EG+ VV+  R +IG T+P ++ PGTIRGD A+    N+IH SDS+E AQ+E++L+F
Sbjct:   18 GLIGEIISRFEKRGLKIVSLKMVKMSRDIAEKLYDEHKGKSFFEELVNYVTSGPVVCMVIEGDDVVQVIRRMIGNTDPKEAPPGTIRGDYALSKSENVIHASDSIEKAQREMSLFF 133          
BLAST of CX299949 vs. ExPASy Swiss-Prot
Match: NDK_SULIK (Nucleoside diphosphate kinase OS=Sulfolobus islandicus (strain M.16.4 / Kamchatka #3) GN=ndk PE=3 SV=1)

HSP 1 Score: 126.716 bits (317), Expect = 1.124e-28
Identity = 59/116 (50.86%), Postives = 83/116 (71.55%), Query Frame = 2
Query:   17 GLVGEIIIRFEKKGFSLKGLKLMTVDRPFAEKHYEDLSSKPFFGSLIEYITSGPVVAMIWEGEGVVKTGRTIIGATNPAQSAPGTIRGDLAIVTGRNIIHGSDSVESAQKEIALWF 364
            GL+GEII RFEK+G  +  LK++ + R  AEK Y++   K FF  L+ Y+TSGPVV M+ EG+ VV+  R +IG T+P ++ PGTIRGD A+    N+IH SDS+E AQ+E++L+F
Sbjct:   18 GLIGEIISRFEKRGLKIVSLKMVKMSRDIAEKLYDEHKGKSFFEELVNYVTSGPVVCMVIEGDDVVQVIRRMIGNTDPKEAPPGTIRGDYALSKSENVIHASDSIEKAQREMSLFF 133          
BLAST of CX299949 vs. ExPASy Swiss-Prot
Match: NDK_SULIA (Nucleoside diphosphate kinase OS=Sulfolobus islandicus (strain M.16.27) GN=ndk PE=3 SV=1)

HSP 1 Score: 126.716 bits (317), Expect = 1.124e-28
Identity = 59/116 (50.86%), Postives = 83/116 (71.55%), Query Frame = 2
Query:   17 GLVGEIIIRFEKKGFSLKGLKLMTVDRPFAEKHYEDLSSKPFFGSLIEYITSGPVVAMIWEGEGVVKTGRTIIGATNPAQSAPGTIRGDLAIVTGRNIIHGSDSVESAQKEIALWF 364
            GL+GEII RFEK+G  +  LK++ + R  AEK Y++   K FF  L+ Y+TSGPVV M+ EG+ VV+  R +IG T+P ++ PGTIRGD A+    N+IH SDS+E AQ+E++L+F
Sbjct:   18 GLIGEIISRFEKRGLKIVSLKMVKMSRDIAEKLYDEHKGKSFFEELVNYVTSGPVVCMVIEGDDVVQVIRRMIGNTDPKEAPPGTIRGDYALSKSENVIHASDSIEKAQREMSLFF 133          
BLAST of CX299949 vs. ExPASy Swiss-Prot
Match: NDK_PYRAB (Nucleoside diphosphate kinase OS=Pyrococcus abyssi GN=ndk PE=3 SV=2)

HSP 1 Score: 126.716 bits (317), Expect = 1.124e-28
Identity = 63/135 (46.67%), Postives = 85/135 (62.96%), Query Frame = 2
Query:   17 GLVGEIIIRFEKKGFSLKGLKLMTVDRPFAEKHYEDLSSKPFFGSLIEYITSGPVVAMIWEGEGVVKTGRTIIGATNPAQSAPGTIRGDLAIVTGR---NIIHGSDSVESAQKEIALWFPDGPINWQSSLHPWIY 412
            GL+GEII RFEK+G  + G+K++ + +  AEKHY +   KPFF SL+EYIT  PVV M+ EG   ++  R + GAT+P  + PGTIRGD A+       N++H SDS ESA++EI L+F D  I        W Y
Sbjct:   21 GLIGEIISRFEKRGLKIVGMKMIWISKELAEKHYAEHREKPFFKSLVEYITRTPVVVMVVEGRCAIEVVRKMAGATDPKNAEPGTIRGDFALEVSDAICNVVHASDSKESAEREIKLYFRDDEIFDYPRAEDWFY 155          
BLAST of CX299949 vs. ExPASy Swiss-Prot
Match: NDK_IGNH4 (Nucleoside diphosphate kinase OS=Ignicoccus hospitalis (strain KIN4/I / DSM 18386 / JCM 14125) GN=ndk PE=3 SV=1)

HSP 1 Score: 126.716 bits (317), Expect = 1.124e-28
Identity = 60/121 (49.59%), Postives = 84/121 (69.42%), Query Frame = 2
Query:   17 GLVGEIIIRFEKKGFSLKGLKLMTVDRPFAEKHYEDLSSKPFFGSLIEYITSGPVVAMIWEGEGVVKTGRTIIGATNPAQSAPGTIRGDLAIVTGRNIIHGSDSVESAQKEIALWFPDGPI 379
            GLVGEII R E+KG  +  +K++ +DR  AE+ YE+   KPFF  LI Y+TSGPVVAM+ EG   V+  R +IG T+ A++APGTIRGD A+   RN++H +DS E   +E++++F D  I
Sbjct:   16 GLVGEIISRIERKGLKIVAMKMLKLDREMAERLYEEHKGKPFFDDLISYVTSGPVVAMVVEGPNAVEVMRRMIGDTDGAKAAPGTIRGDFALSKARNVVHATDSPEKVAREMSIFFRDDEI 136          
BLAST of CX299949 vs. ExPASy Swiss-Prot
Match: NDK_HALSA (Nucleoside diphosphate kinase OS=Halobacterium salinarium GN=ndk PE=1 SV=1)

HSP 1 Score: 126.716 bits (317), Expect = 1.124e-28
Identity = 60/136 (44.12%), Postives = 83/136 (61.03%), Query Frame = 2
Query:   17 GLVGEIIIRFEKKGFSLKGLKLMTVDRPFAEKHYEDLSSKPFFGSLIEYITSGPVVAMIWEGEGVVKTGRTIIGATNPAQSAPGTIRGDLAIVTGRNIIHGSDSVESA--QKEIALWFPDGP-INWQSSLHPWIYE 415
            GL+G+I+ R E KG  + G K M +D   A +HY +   KPFF  L+ +ITSGPV AM+WEG    +  R ++GAT+   +APGTIRGD     G N+IHGSD  +    ++EIAL+F D   ++W      W+YE
Sbjct:   20 GLIGDIVTRLETKGLKMVGGKFMRIDEELAHEHYAEHEDKPFFDGLVSFITSGPVFAMVWEGADATRQVRQLMGATDAQDAAPGTIRGDYGNDLGHNLIHGSDHEDEGANEREIALFFDDDELVDWDRDASAWVYE 155          
BLAST of CX299949 vs. ExPASy Swiss-Prot
Match: NDK_HALS3 (Nucleoside diphosphate kinase OS=Halobacterium salinarum (strain ATCC 29341 / DSM 671 / R1) GN=ndk PE=3 SV=1)

HSP 1 Score: 126.716 bits (317), Expect = 1.124e-28
Identity = 60/136 (44.12%), Postives = 83/136 (61.03%), Query Frame = 2
Query:   17 GLVGEIIIRFEKKGFSLKGLKLMTVDRPFAEKHYEDLSSKPFFGSLIEYITSGPVVAMIWEGEGVVKTGRTIIGATNPAQSAPGTIRGDLAIVTGRNIIHGSDSVESA--QKEIALWFPDGP-INWQSSLHPWIYE 415
            GL+G+I+ R E KG  + G K M +D   A +HY +   KPFF  L+ +ITSGPV AM+WEG    +  R ++GAT+   +APGTIRGD     G N+IHGSD  +    ++EIAL+F D   ++W      W+YE
Sbjct:   20 GLIGDIVTRLETKGLKMVGGKFMRIDEELAHEHYAEHEDKPFFDGLVSFITSGPVFAMVWEGADATRQVRQLMGATDAQDAAPGTIRGDYGNDLGHNLIHGSDHEDEGANEREIALFFDDDELVDWDRDASAWVYE 155          
BLAST of CX299949 vs. ExPASy Swiss-Prot
Match: NDK_METJA (Nucleoside diphosphate kinase OS=Methanocaldococcus jannaschii GN=ndk PE=1 SV=1)

HSP 1 Score: 126.331 bits (316), Expect = 1.468e-28
Identity = 60/120 (50.00%), Postives = 84/120 (70.00%), Query Frame = 2
Query:   20 LVGEIIIRFEKKGFSLKGLKLMTVDRPFAEKHYEDLSSKPFFGSLIEYITSGPVVAMIWEGEGVVKTGRTIIGATNPAQSAPGTIRGDLAIVTGRNIIHGSDSVESAQKEIALWFPDGPI 379
            L+G+II RFE KGF +  +K++ +DR  AEK+YE+   K F+  LI ++TSG ++ M+ EGE  +   R +IG TNPA++ PGTIRGD A+ T  NIIH SDS ESA++EI L+F +  I
Sbjct:   18 LIGKIIERFENKGFEIVAMKMIKLDREMAEKYYEEHKGKEFYERLINFMTSGRMIVMVVEGENAISVVRKMIGKTNPAEAEPGTIRGDFALTTPDNIIHASDSKESAEREIKLFFKEDEI 137          
BLAST of CX299949 vs. ExPASy Swiss-Prot
Match: NDK_HALWD (Nucleoside diphosphate kinase OS=Haloquadratum walsbyi (strain DSM 16790) GN=ndk PE=3 SV=1)

HSP 1 Score: 126.331 bits (316), Expect = 1.468e-28
Identity = 61/136 (44.85%), Postives = 87/136 (63.97%), Query Frame = 2
Query:   17 GLVGEIIIRFEKKGFSLKGLKLMTVDRPFAEKHYEDLSSKPFFGSLIEYITSGPVVAMIWEGEGVVKTGRTIIGATNPAQSAPGTIRGDLAIVTGRNIIHGSDSVESA--QKEIALWFPDGPI-NWQSSLHPWIYE 415
            GL+GEII RFE +G +L G K   +D   A  HY +   KPFF  L+ +IT+GPV AM+WEG    +  R+++G T+PA+SAPGTIRGD  +  GRN+IH SD  +    ++EI L+F +  +  ++    PW+YE
Sbjct:   23 GLIGEIISRFEDRGLTLVGGKFTRLDTEVARDHYGEHKDKPFFDDLVSFITAGPVFAMVWEGADATRQVRSMVGETDPAESAPGTIRGDYGLDLGRNVIHASDHEDEGANEREIQLFFDESELYTYERIDDPWLYE 158          
The following BLAST results are available for this feature:
BLAST of CX299949 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
NDK_SULIM1.124e-2850.86Nucleoside diphosphate kinase OS=Sulfolobus island... [more]
NDK_SULIL1.124e-2850.86Nucleoside diphosphate kinase OS=Sulfolobus island... [more]
NDK_SULIK1.124e-2850.86Nucleoside diphosphate kinase OS=Sulfolobus island... [more]
NDK_SULIA1.124e-2850.86Nucleoside diphosphate kinase OS=Sulfolobus island... [more]
NDK_PYRAB1.124e-2846.67Nucleoside diphosphate kinase OS=Pyrococcus abyssi... [more]
NDK_IGNH41.124e-2849.59Nucleoside diphosphate kinase OS=Ignicoccus hospit... [more]
NDK_HALSA1.124e-2844.12Nucleoside diphosphate kinase OS=Halobacterium sal... [more]
NDK_HALS31.124e-2844.12Nucleoside diphosphate kinase OS=Halobacterium sal... [more]
NDK_METJA1.468e-2850.00Nucleoside diphosphate kinase OS=Methanocaldococcu... [more]
NDK_HALWD1.468e-2844.85Nucleoside diphosphate kinase OS=Haloquadratum wal... [more]

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Properties
Property NameValue
Genbank descriptionC07004D02SK SaltLeaf1 Citrus clementina cDNA clone C07004D02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX299949 ID=CX299949; Name=CX299949; organism=Citrus clementina; type=EST; length=686bp
AATTCGGCACGAGGGAGGCCTTGTTGGTGAAATCATCATCAGATTTGAGA
AGAAGGGTTTCTCCTTGAAGGGTTTGAAGCTTATGACTGTGGACCGCCCT
TTTGCTGAGAAGCACTATGAGGATTTGTCATCGAAGCCTTTCTTTGGTTC
TCTGATTGAGTACATTACCTCTGGTCCTGTTGTTGCTATGATTTGGGAGG
GTGAAGGTGTTGTTAAGACTGGCCGCACTATTATTGGAGCCACCAACCCT
GCGCAGTCTGCTCCTGGAACCATCCGTGGTGATTTGGCTATCGTGACGGG
CAGGAATATCATCCATGGAAGTGACTCAGTTGAGAGTGCCCAGAAAGAAA
TCGCCTTGTGGTTCCCTGATGGCCCTATTAACTGGCAGAGCAGCCTTCAC
CCTTGGATCTATGAGTAAACTAATGTTTGGTTGAGGAGCCTAATTGTTCC
TGCAGTTAGACTTATCCCTATCCCTATCCCTATTTCCTTATTTATGGTTA
CTCCTTGTTGGTGAACTGTTATGAAGTATTGAGTTAAATTGAGACCAATC
CTGGTTATGTTGGCTGCTTTCATTCTTGTGGTTGCCATATACAATATTTA
AGCTTTTTTGTTGACTGTATTATGAATTGAGTTTGTTAATGGTTAGCACA
TGATGGTTGCACTTTTTAAAAAAAAAAAAAAAAAAA
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