CX299949

Overview
NameCX299949
Unique NameCX299949
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length686
Libraries
Library NameType
SaltLeaf1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX299949 vs. ExPASy Swiss-Prot
Match: NDK_HALLT (Nucleoside diphosphate kinase OS=Halorubrum lacusprofundi (strain ATCC 49239 / DSM 5036 / JCM 8891 / ACAM 34) GN=ndk PE=3 SV=1)

HSP 1 Score: 125.946 bits (315), Expect = 1.918e-28
Identity = 59/136 (43.38%), Postives = 88/136 (64.71%), Query Frame = 2
Query:   17 GLVGEIIIRFEKKGFSLKGLKLMTVDRPFAEKHYEDLSSKPFFGSLIEYITSGPVVAMIWEGEGVVKTGRTIIGATNPAQSAPGTIRGDLAIVTGRNIIHGSDSVESA--QKEIALWFPDGP-INWQSSLHPWIYE 415
            GL+GEI+ RFE++G  L G K M +D   A +HY +   KPFF  L+++ITS PV AM+WEG    +  R+++G T+PA+SAPGTIRGD  +  G+N+IH SD  +    ++EI L+F +   +++      W+YE
Sbjct:   20 GLIGEIVSRFEERGLKLVGGKFMQIDEDLAHQHYGEHEGKPFFDGLVDFITSAPVFAMVWEGADATRQVRSMVGETDPAESAPGTIRGDFGLDLGQNVIHASDHEDEGANEREIDLFFDEEELVDYGLDTAAWVYE 155          
BLAST of CX299949 vs. ExPASy Swiss-Prot
Match: NDK_PICTO (Nucleoside diphosphate kinase OS=Picrophilus torridus GN=ndk PE=3 SV=2)

HSP 1 Score: 125.561 bits (314), Expect = 2.505e-28
Identity = 60/123 (48.78%), Postives = 84/123 (68.29%), Query Frame = 2
Query:   11 EGGLVGEIIIRFEKKGFSLKGLKLMTVDRPFAEKHYEDLSSKPFFGSLIEYITSGPVVAMIWEGEGVVKTGRTIIGATNPAQSAPGTIRGDLAIVTGRNIIHGSDSVESAQKEIALWFPDGPI 379
            E  L+GE+I RFE+KG ++K LK+M V R  AE HY     KPFF  L+ Y+TSGP+VAMI EG   + + R + GAT+ +++APGTIRGD ++   RNI+H SDS+ES + E  ++F +  I
Sbjct:   14 ERNLIGEVISRFERKGLAIKALKMMRVTREQAEDHYSVHRLKPFFDDLVSYLTSGPIVAMIVEGNNAIASSRMLAGATDGSKAAPGTIRGDFSLDIERNIVHASDSLESYEHEYKIFFNENEI 136          
BLAST of CX299949 vs. ExPASy Swiss-Prot
Match: NDK_METTH (Nucleoside diphosphate kinase OS=Methanobacterium thermoautotrophicum GN=ndk PE=3 SV=2)

HSP 1 Score: 125.561 bits (314), Expect = 2.505e-28
Identity = 62/133 (46.62%), Postives = 88/133 (66.17%), Query Frame = 2
Query:   20 LVGEIIIRFEKKGFSLKGLKLMTVDRPFAEKHYEDLSSKPFFGSLIEYITSGPVVAMIWEGEGVVKTGRTIIGATNPAQSAPGTIRGDLAIVTGRNIIHGSDSVESAQKEIALWFPDGPI-NWQSSLHPWIYE 415
            L G II RFE +G  +   K++ +    A +HY++   KPFF  L++YITS PV+AM+ EG+  +   R ++GATNPA++  GTIRGD A+ TGRNIIH SDS ESA++EI L+F +  I +++      IYE
Sbjct:   17 LAGRIIARFEDRGLKIVAFKMLQIPEDLAMEHYQEHREKPFFRDLVDYITSAPVIAMVIEGKDCISLIRKMVGATNPAEADLGTIRGDFALETGRNIIHASDSPESAEREIKLFFDESEICSYEMPDREMIYE 149          
BLAST of CX299949 vs. ExPASy Swiss-Prot
Match: NDK_SULAC (Nucleoside diphosphate kinase OS=Sulfolobus acidocaldarius GN=ndk PE=3 SV=1)

HSP 1 Score: 124.405 bits (311), Expect = 5.580e-28
Identity = 61/117 (52.14%), Postives = 82/117 (70.09%), Query Frame = 2
Query:   20 LVGEIIIRFEKKGFSLKGLKLMTVDRPFAEKHYEDLSSKPFFGSLIEYITSGPVVAMIWEGEGVVKTGRTIIGATNPAQSAPGTIRGDLAIVTGRNIIHGSDSVESAQKEIALWFPD 370
            LVGEII RFEK+GF++  LK++ +DR  AE+ Y++   K FF  LI YI SGPVV MI EG+  V   R +IGAT+P +++PGTIRGD A+    N+IH SDS E A+ E+ ++F D
Sbjct:   19 LVGEIISRFEKRGFNILALKMVHMDRATAERLYQEHKGKGFFNELINYIISGPVVCMIIEGDDAVSVVRKMIGATDPKEASPGTIRGDYALSKSENVIHASDSEEKAKTEMGIFFQD 135          
BLAST of CX299949 vs. ExPASy Swiss-Prot
Match: NDK_METS5 (Nucleoside diphosphate kinase OS=Metallosphaera sedula (strain ATCC 51363 / DSM 5348) GN=ndk PE=3 SV=1)

HSP 1 Score: 124.405 bits (311), Expect = 5.580e-28
Identity = 58/120 (48.33%), Postives = 84/120 (70.00%), Query Frame = 2
Query:   20 LVGEIIIRFEKKGFSLKGLKLMTVDRPFAEKHYEDLSSKPFFGSLIEYITSGPVVAMIWEGEGVVKTGRTIIGATNPAQSAPGTIRGDLAIVTGRNIIHGSDSVESAQKEIALWFPDGPI 379
            L+GEI+ R E+KG  +  +K++ +DR  A K YE+   K FF  L+ YITSGPVV M+ EG+  V+  RT+IGAT+P +++PGTIRGDLA+    N+IH SD+ E A++E++L+F    I
Sbjct:   19 LIGEIVGRIERKGLRIAAMKMVKIDRETANKLYEEHIGKSFFNELVSYITSGPVVCMVVEGDEAVRVMRTLIGATDPKEASPGTIRGDLALSKAENVIHASDAEEKAKREMSLFFSPNEI 138          
BLAST of CX299949 vs. ExPASy Swiss-Prot
Match: NDK_ENCCU (Nucleoside diphosphate kinase OS=Encephalitozoon cuniculi GN=NDK1 PE=1 SV=1)

HSP 1 Score: 124.02 bits (310), Expect = 7.287e-28
Identity = 64/133 (48.12%), Postives = 83/133 (62.41%), Query Frame = 2
Query:   20 LVGEIIIRFEKKGFSLKGLKLMTVDRPFAEKHYEDLSSKPFFGSLIEYITSGPVVAMIWEGEGVVKTGRTIIGATNPAQSAPGTIRGDLAIVTGRNIIHGSDSVESAQKEIALWFPDG--PINWQSSLHPWIY 412
            L+  II RFE+KG  L   K +   R   E HY  LSS PFF  ++E + SG V+AM+W G+  V  GR +IG TNP  ++ GTIRGD  + TG+NIIHGSD VE+A+KEI LW  D   P+++      WIY
Sbjct:   17 LISRIIQRFEEKGLYLAASKCVIPKREVLETHYSHLSSMPFFSEMVEDMMSGMVLAMVWVGKDAVSIGRKLIGETNPQAASVGTIRGDYGVSTGKNIIHGSDCVENAEKEIKLWIGDDVQPVSFFDK--EWIY 147          
BLAST of CX299949 vs. ExPASy Swiss-Prot
Match: NDK_MYCVP (Nucleoside diphosphate kinase OS=Mycobacterium vanbaalenii (strain DSM 7251 / PYR-1) GN=ndk PE=3 SV=1)

HSP 1 Score: 123.635 bits (309), Expect = 9.517e-28
Identity = 62/117 (52.99%), Postives = 78/117 (66.67%), Query Frame = 2
Query:   20 LVGEIIIRFEKKGFSLKGLKLMTVDRPFAEKHYEDLSSKPFFGSLIEYITSGPVVAMIWEGEGVVKTGRTIIGATNPAQSA-PGTIRGDLAIVTGRNIIHGSDSVESAQKEIALWFP 367
            L+GEII R E KG ++  L+L  VD   A  HY +   KPFF SL+E+ITSGPVVA I EG   +   R + G T+P + A PGTIRGDL + T  N++HGSDS +SA +EI LWFP
Sbjct:   18 LIGEIISRIEAKGLTVAALELKNVDDALARAHYAEHEGKPFFASLLEFITSGPVVAAILEGPRAIAAFRQLAGGTDPVEKATPGTIRGDLGLETQFNLVHGSDSPDSAAREIELWFP 134          
BLAST of CX299949 vs. ExPASy Swiss-Prot
Match: NDK_HERA2 (Nucleoside diphosphate kinase OS=Herpetosiphon aurantiacus (strain ATCC 23779 / DSM 785) GN=ndk PE=3 SV=1)

HSP 1 Score: 123.635 bits (309), Expect = 9.517e-28
Identity = 62/134 (46.27%), Postives = 84/134 (62.69%), Query Frame = 2
Query:   17 GLVGEIIIRFEKKGFSLKGLKLMTVDRPFAEKHYEDLSSKPFFGSLIEYITSGPVVAMIWEGEGVVKTGRTIIGATNPAQSAPGTIRGDLAIVTGRNIIHGSDSVESAQKEIALWF-PDGPINWQSSLHPWIYE 415
            GL+G I+ R E +G    G+KL  V    A KHY     KPFF  L+ YITSGPV+ +  EG+ V++  R+ +GATNP ++APGTIRGD  +  GRN+IH SDS E+   E+AL+F  +  I  + S+  WI E
Sbjct:   16 GLIGPILTRLEARGLKFIGIKLSQVSSELAHKHYGVHEGKPFFAGLVSYITSGPVLVVAVEGKDVIEIVRSTVGATNPVKAAPGTIRGDFGVNIGRNLIHASDSPENGDHEVALFFSSEELIRSERSVDQWITE 149          
BLAST of CX299949 vs. ExPASy Swiss-Prot
Match: NDK_STRA3 (Nucleoside diphosphate kinase OS=Streptococcus agalactiae serotype III GN=ndk PE=3 SV=1)

HSP 1 Score: 123.25 bits (308), Expect = 1.243e-27
Identity = 57/121 (47.11%), Postives = 83/121 (68.60%), Query Frame = 2
Query:   17 GLVGEIIIRFEKKGFSLKGLKLMTVDRPFAEKHYEDLSSKPFFGSLIEYITSGPVVAMIWEGEGVVKTGRTIIGATNPAQSAPGTIRGDLAIVTGR-----NIIHGSDSVESAQKEIALWF 364
            G +GE+I R E++GFS+  L++   D    ++HY +L+ +PFF +L++Y+TSGPV+  +  GE V+ T RT++G+TNP  + PGTIRGD A          NI+HGSDS ESA +EIA+WF
Sbjct:   16 GFIGEVISRIERRGFSIDRLEVRHADADILKRHYAELTDRPFFPTLVDYMTSGPVIIEVISGEEVISTWRTMMGSTNPKDALPGTIRGDFAQAPSPNQATCNIVHGSDSPESATREIAIWF 136          
BLAST of CX299949 vs. ExPASy Swiss-Prot
Match: NDK_HYPBU (Nucleoside diphosphate kinase OS=Hyperthermus butylicus (strain DSM 5456 / JCM 9403) GN=ndk PE=3 SV=1)

HSP 1 Score: 123.25 bits (308), Expect = 1.243e-27
Identity = 62/121 (51.24%), Postives = 82/121 (67.77%), Query Frame = 2
Query:   17 GLVGEIIIRFEKKGFSLKGLKLMTVDRPFAEKHYEDLSSKPFFGSLIEYITSGPVVAMIWEGEGVVKTGRTIIGATNPAQSAPGTIRGDLAIVTGRNIIHGSDSVESAQKEIALWFPDGPI 379
            GLVGEII RFE+KG  +K LK+  + R  AEK YE    KPFF  L+ ++TSGPVVAMI EG+  ++  R +IG T+  ++ PGTIRGD A+  G N+IH SDS ES ++E  ++F D  I
Sbjct:   18 GLVGEIIARFERKGLKIKALKMKWLTREEAEKLYEVHRGKPFFEDLVNFVTSGPVVAMILEGDSAIEVVRLMIGPTDGRKAPPGTIRGDYALDIGANVIHASDSKESYEREYKVFFSDDEI 138          
The following BLAST results are available for this feature:
BLAST of CX299949 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
NDK_HALLT1.918e-2843.38Nucleoside diphosphate kinase OS=Halorubrum lacusp... [more]
NDK_PICTO2.505e-2848.78Nucleoside diphosphate kinase OS=Picrophilus torri... [more]
NDK_METTH2.505e-2846.62Nucleoside diphosphate kinase OS=Methanobacterium ... [more]
NDK_SULAC5.580e-2852.14Nucleoside diphosphate kinase OS=Sulfolobus acidoc... [more]
NDK_METS55.580e-2848.33Nucleoside diphosphate kinase OS=Metallosphaera se... [more]
NDK_ENCCU7.287e-2848.12Nucleoside diphosphate kinase OS=Encephalitozoon c... [more]
NDK_MYCVP9.517e-2852.99Nucleoside diphosphate kinase OS=Mycobacterium van... [more]
NDK_HERA29.517e-2846.27Nucleoside diphosphate kinase OS=Herpetosiphon aur... [more]
NDK_STRA31.243e-2747.11Nucleoside diphosphate kinase OS=Streptococcus aga... [more]
NDK_HYPBU1.243e-2751.24Nucleoside diphosphate kinase OS=Hyperthermus buty... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionC07004D02SK SaltLeaf1 Citrus clementina cDNA clone C07004D02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX299949 ID=CX299949; Name=CX299949; organism=Citrus clementina; type=EST; length=686bp
AATTCGGCACGAGGGAGGCCTTGTTGGTGAAATCATCATCAGATTTGAGA
AGAAGGGTTTCTCCTTGAAGGGTTTGAAGCTTATGACTGTGGACCGCCCT
TTTGCTGAGAAGCACTATGAGGATTTGTCATCGAAGCCTTTCTTTGGTTC
TCTGATTGAGTACATTACCTCTGGTCCTGTTGTTGCTATGATTTGGGAGG
GTGAAGGTGTTGTTAAGACTGGCCGCACTATTATTGGAGCCACCAACCCT
GCGCAGTCTGCTCCTGGAACCATCCGTGGTGATTTGGCTATCGTGACGGG
CAGGAATATCATCCATGGAAGTGACTCAGTTGAGAGTGCCCAGAAAGAAA
TCGCCTTGTGGTTCCCTGATGGCCCTATTAACTGGCAGAGCAGCCTTCAC
CCTTGGATCTATGAGTAAACTAATGTTTGGTTGAGGAGCCTAATTGTTCC
TGCAGTTAGACTTATCCCTATCCCTATCCCTATTTCCTTATTTATGGTTA
CTCCTTGTTGGTGAACTGTTATGAAGTATTGAGTTAAATTGAGACCAATC
CTGGTTATGTTGGCTGCTTTCATTCTTGTGGTTGCCATATACAATATTTA
AGCTTTTTTGTTGACTGTATTATGAATTGAGTTTGTTAATGGTTAGCACA
TGATGGTTGCACTTTTTAAAAAAAAAAAAAAAAAAA
back to top