CX299949

Overview
NameCX299949
Unique NameCX299949
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length686
Libraries
Library NameType
SaltLeaf1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX299949 vs. ExPASy Swiss-Prot
Match: NDK_PSEHT (Nucleoside diphosphate kinase OS=Pseudoalteromonas haloplanktis (strain TAC 125) GN=ndk PE=3 SV=1)

HSP 1 Score: 106.301 bits (264), Expect = 1.572e-22
Identity = 52/116 (44.83%), Postives = 73/116 (62.93%), Query Frame = 2
Query:   23 VGEIIIRFEKKGFSLKGLKLMTVDRPFAEKHYEDLSSKPFFGSLIEYITSGPVVAMIWEGEGVVKTGRTIIGATNPAQSAPGTIRGDLAIVTGRNIIHGSDSVESAQKEIALWFPD 370
            +G I  RFE  G  +   K++ + +  AE  Y + S +PFFG+L+ ++TSGPV+  + EGE  V   R I+GATNPA +  GT+R D A     N +HGSD+VESA +EIA +F D
Sbjct:   20 IGAIYNRFETAGLKIVAAKMVHLSQEKAEGFYAEHSERPFFGALVSFMTSGPVMVTVLEGENAVLKNREIMGATNPADALAGTLRADYADSIDENAVHGSDAVESAAREIAYFFAD 135          
BLAST of CX299949 vs. ExPASy Swiss-Prot
Match: NDK_CITK8 (Nucleoside diphosphate kinase OS=Citrobacter koseri (strain ATCC BAA-895 / CDC 4225-83 / SGSC4696) GN=ndk PE=3 SV=1)

HSP 1 Score: 106.301 bits (264), Expect = 1.572e-22
Identity = 52/120 (43.33%), Postives = 74/120 (61.67%), Query Frame = 2
Query:   20 LVGEIIIRFEKKGFSLKGLKLMTVDRPFAEKHYEDLSSKPFFGSLIEYITSGPVVAMIWEGEGVVKTGRTIIGATNPAQSAPGTIRGDLAIVTGRNIIHGSDSVESAQKEIALWFPDGPI 379
            ++G I  RFE  GF + G K++ +    A   Y +   KPFF  L+E++TSGP+V  + E E  V+  R ++GATNPA +  GT+R D A     N  HGSDS+ESAQ+EIA +F +G +
Sbjct:   19 VIGNIFARFEAAGFKIVGTKMLHLTVEQARGFYAEHDGKPFFDGLVEFMTSGPIVVSVLESENAVQRHRDLLGATNPANALAGTLRADYADSFTENGTHGSDSLESAQREIAYFFGEGEV 138          
BLAST of CX299949 vs. ExPASy Swiss-Prot
Match: NDK_BORPD (Nucleoside diphosphate kinase OS=Bordetella petrii (strain ATCC BAA-461 / DSM 12804 / CCUG 43448) GN=ndk PE=3 SV=1)

HSP 1 Score: 106.301 bits (264), Expect = 1.572e-22
Identity = 48/117 (41.03%), Postives = 74/117 (63.25%), Query Frame = 2
Query:   20 LVGEIIIRFEKKGFSLKGLKLMTVDRPFAEKHYEDLSSKPFFGSLIEYITSGPVVAMIWEGEGVVKTGRTIIGATNPAQSAPGTIRGDLAIVTGRNIIHGSDSVESAQKEIALWFPD 370
            ++G+II RFE  G  +   +L  + R  AE+ Y     +PFF  L++++ SGPV   + EGEG ++  R ++GAT+P ++APGTIR D A     N +HGSD+ E+A  E+A +FP+
Sbjct:   19 VIGQIIARFENAGLKVIAARLQQLSRADAERFYAVHKERPFFKDLVDFMVSGPVFVQVLEGEGAIQKNRDLMGATDPKKAAPGTIRADFADSIDANAVHGSDAAETAAVEVAFFFPE 135          
BLAST of CX299949 vs. ExPASy Swiss-Prot
Match: NDK_ANAMM (Nucleoside diphosphate kinase OS=Anaplasma marginale (strain St. Maries) GN=ndk PE=3 SV=1)

HSP 1 Score: 106.301 bits (264), Expect = 1.572e-22
Identity = 52/123 (42.28%), Postives = 77/123 (62.60%), Query Frame = 2
Query:   11 EGGLVGEIIIRFEKKGFSLKGLKLMTVDRPFAEKHYEDLSSKPFFGSLIEYITSGPVVAMIWEGEGVVKTGRTIIGATNPAQSAPGTIRGDLAIVTGRNIIHGSDSVESAQKEIALWFPDGPI 379
            E G++G ++   E  G  +   ++  +    AE  Y    ++PFF SL+ ++TSGPVV  +  GE  VKT R ++GATNP+++APGTIRGDLA     N +HGSDS+E+A+ EI  +F +  I
Sbjct:   16 ERGIIGRVLSYIEAAGLRIVAQRMCALSHEQAEAFYAVHKARPFFPSLVGFMTSGPVVVQVLVGESAVKTYRDVMGATNPSEAAPGTIRGDLAESIDANCVHGSDSLENAEWEIKFFFKEHEI 138          
BLAST of CX299949 vs. ExPASy Swiss-Prot
Match: NDK_ANAMF (Nucleoside diphosphate kinase OS=Anaplasma marginale (strain Florida) GN=ndk PE=3 SV=1)

HSP 1 Score: 106.301 bits (264), Expect = 1.572e-22
Identity = 52/123 (42.28%), Postives = 77/123 (62.60%), Query Frame = 2
Query:   11 EGGLVGEIIIRFEKKGFSLKGLKLMTVDRPFAEKHYEDLSSKPFFGSLIEYITSGPVVAMIWEGEGVVKTGRTIIGATNPAQSAPGTIRGDLAIVTGRNIIHGSDSVESAQKEIALWFPDGPI 379
            E G++G ++   E  G  +   ++  +    AE  Y    ++PFF SL+ ++TSGPVV  +  GE  VKT R ++GATNP+++APGTIRGDLA     N +HGSDS+E+A+ EI  +F +  I
Sbjct:   16 ERGIIGRVLSYIEAAGLRIVAQRMCALSHEQAEAFYAVHKARPFFPSLVGFMTSGPVVVQVLVGESAVKTYRDVMGATNPSEAAPGTIRGDLAESIDANCVHGSDSLENAEWEIKFFFKEHEI 138          
BLAST of CX299949 vs. ExPASy Swiss-Prot
Match: NDK_SALPC (Nucleoside diphosphate kinase OS=Salmonella paratyphi C (strain RKS4594) GN=ndk PE=3 SV=1)

HSP 1 Score: 105.916 bits (263), Expect = 2.054e-22
Identity = 51/120 (42.50%), Postives = 74/120 (61.67%), Query Frame = 2
Query:   20 LVGEIIIRFEKKGFSLKGLKLMTVDRPFAEKHYEDLSSKPFFGSLIEYITSGPVVAMIWEGEGVVKTGRTIIGATNPAQSAPGTIRGDLAIVTGRNIIHGSDSVESAQKEIALWFPDGPI 379
            ++G I  RFE  GF + G K++ +    A   Y +   KPFF  L+E++TSGP++  + E E  V+  R ++GATNPA +  GT+R D A     N  HGSDS+ESAQ+EIA +F +G +
Sbjct:   19 VIGSIFARFEAAGFKIVGTKMLHLTVEQARGFYAEHDGKPFFDGLVEFMTSGPILVSVLESENAVQRHRDLLGATNPANALAGTLRADYADSLTENGTHGSDSLESAQREIAFFFGEGEV 138          
BLAST of CX299949 vs. ExPASy Swiss-Prot
Match: NDK_SALCH (Nucleoside diphosphate kinase OS=Salmonella choleraesuis GN=ndk PE=3 SV=3)

HSP 1 Score: 105.916 bits (263), Expect = 2.054e-22
Identity = 51/120 (42.50%), Postives = 74/120 (61.67%), Query Frame = 2
Query:   20 LVGEIIIRFEKKGFSLKGLKLMTVDRPFAEKHYEDLSSKPFFGSLIEYITSGPVVAMIWEGEGVVKTGRTIIGATNPAQSAPGTIRGDLAIVTGRNIIHGSDSVESAQKEIALWFPDGPI 379
            ++G I  RFE  GF + G K++ +    A   Y +   KPFF  L+E++TSGP++  + E E  V+  R ++GATNPA +  GT+R D A     N  HGSDS+ESAQ+EIA +F +G +
Sbjct:   19 VIGSIFARFEAAGFKIVGTKMLHLTVEQARGFYAEHDGKPFFDGLVEFMTSGPILVSVLESENAVQRHRDLLGATNPANALAGTLRADYADSLTENGTHGSDSLESAQREIAFFFGEGEV 138          
BLAST of CX299949 vs. ExPASy Swiss-Prot
Match: NDK_METPB (Nucleoside diphosphate kinase OS=Methylobacterium populi (strain ATCC BAA-705 / NCIMB 13946 / BJ001) GN=ndk PE=3 SV=1)

HSP 1 Score: 105.916 bits (263), Expect = 2.054e-22
Identity = 54/120 (45.00%), Postives = 73/120 (60.83%), Query Frame = 2
Query:   20 LVGEIIIRFEKKGFSLKGLKLMTVDRPFAEKHYEDLSSKPFFGSLIEYITSGPVVAMIWEGEGVVKTGRTIIGATNPAQSAPGTIRGDLAIVTGRNIIHGSDSVESAQKEIALWFPDGPI 379
            + G +    E  G  + G + + + R  AEK YE    +PFFG L+E++TSGPVV  + EGE  V   R ++GATNPAQ+A GTIR   A   G N +HGSDS ++A+ EIA +F D  I
Sbjct:   19 ITGAVNAVIEAAGLRIVGQRRIRMTRAQAEKFYEVHKERPFFGELVEFMTSGPVVVQVLEGENAVAKYREVMGATNPAQAADGTIRKQFAESVGENTVHGSDSADNAKIEIAQFFTDADI 138          
BLAST of CX299949 vs. ExPASy Swiss-Prot
Match: NDK_METC4 (Nucleoside diphosphate kinase OS=Methylobacterium chloromethanicum (strain CM4 / NCIMB 13688) GN=ndk PE=3 SV=1)

HSP 1 Score: 105.916 bits (263), Expect = 2.054e-22
Identity = 54/120 (45.00%), Postives = 73/120 (60.83%), Query Frame = 2
Query:   20 LVGEIIIRFEKKGFSLKGLKLMTVDRPFAEKHYEDLSSKPFFGSLIEYITSGPVVAMIWEGEGVVKTGRTIIGATNPAQSAPGTIRGDLAIVTGRNIIHGSDSVESAQKEIALWFPDGPI 379
            + G +    E  G  + G + + + R  AEK YE    +PFFG L+E++TSGPVV  + EGE  V   R ++GATNPAQ+A GTIR   A   G N +HGSDS ++A+ EIA +F D  I
Sbjct:   19 ITGAVNAVIEAAGLRIVGQRRIRMTREQAEKFYEVHKERPFFGELVEFMTSGPVVVQVLEGENAVAKYREVMGATNPAQAADGTIRKQFAESVGENTVHGSDSADNARLEIAQFFNDADI 138          
BLAST of CX299949 vs. ExPASy Swiss-Prot
Match: NDK_HAES1 (Nucleoside diphosphate kinase OS=Haemophilus somnus (strain 129Pt) GN=ndk PE=3 SV=1)

HSP 1 Score: 105.916 bits (263), Expect = 2.054e-22
Identity = 53/123 (43.09%), Postives = 78/123 (63.41%), Query Frame = 2
Query:   11 EGGLVGEIIIRFEKKGFSLKGLKLMTVDRPFAEKHYEDLSSKPFFGSLIEYITSGPVVAMIWEGEGVVKTGRTIIGATNPAQSAPGTIRGDLAIVTGRNIIHGSDSVESAQKEIALWFPDGPI 379
            E  L+G II R E KGF +  +K++ +++  AE  Y + S K FF  LI Y+TS P+V ++ + E  VK  RT +G TNP  +  GT+R + AI   +N +HGSDS+E+AQ+EIA +F +  I
Sbjct:   16 ERNLIGNIISRLEDKGFQIIAMKMLHLNQEQAEGFYTEHSDKAFFAELIRYMTSAPIVVLVLQKENAVKDYRTFMGTTNPEIAENGTLRYEFAINQTQNSVHGSDSLENAQREIAYFFAEAEI 138          
The following BLAST results are available for this feature:
BLAST of CX299949 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
NDK_PSEHT1.572e-2244.83Nucleoside diphosphate kinase OS=Pseudoalteromonas... [more]
NDK_CITK81.572e-2243.33Nucleoside diphosphate kinase OS=Citrobacter koser... [more]
NDK_BORPD1.572e-2241.03Nucleoside diphosphate kinase OS=Bordetella petrii... [more]
NDK_ANAMM1.572e-2242.28Nucleoside diphosphate kinase OS=Anaplasma margina... [more]
NDK_ANAMF1.572e-2242.28Nucleoside diphosphate kinase OS=Anaplasma margina... [more]
NDK_SALPC2.054e-2242.50Nucleoside diphosphate kinase OS=Salmonella paraty... [more]
NDK_SALCH2.054e-2242.50Nucleoside diphosphate kinase OS=Salmonella choler... [more]
NDK_METPB2.054e-2245.00Nucleoside diphosphate kinase OS=Methylobacterium ... [more]
NDK_METC42.054e-2245.00Nucleoside diphosphate kinase OS=Methylobacterium ... [more]
NDK_HAES12.054e-2243.09Nucleoside diphosphate kinase OS=Haemophilus somnu... [more]

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Properties
Property NameValue
Genbank descriptionC07004D02SK SaltLeaf1 Citrus clementina cDNA clone C07004D02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX299949 ID=CX299949; Name=CX299949; organism=Citrus clementina; type=EST; length=686bp
AATTCGGCACGAGGGAGGCCTTGTTGGTGAAATCATCATCAGATTTGAGA
AGAAGGGTTTCTCCTTGAAGGGTTTGAAGCTTATGACTGTGGACCGCCCT
TTTGCTGAGAAGCACTATGAGGATTTGTCATCGAAGCCTTTCTTTGGTTC
TCTGATTGAGTACATTACCTCTGGTCCTGTTGTTGCTATGATTTGGGAGG
GTGAAGGTGTTGTTAAGACTGGCCGCACTATTATTGGAGCCACCAACCCT
GCGCAGTCTGCTCCTGGAACCATCCGTGGTGATTTGGCTATCGTGACGGG
CAGGAATATCATCCATGGAAGTGACTCAGTTGAGAGTGCCCAGAAAGAAA
TCGCCTTGTGGTTCCCTGATGGCCCTATTAACTGGCAGAGCAGCCTTCAC
CCTTGGATCTATGAGTAAACTAATGTTTGGTTGAGGAGCCTAATTGTTCC
TGCAGTTAGACTTATCCCTATCCCTATCCCTATTTCCTTATTTATGGTTA
CTCCTTGTTGGTGAACTGTTATGAAGTATTGAGTTAAATTGAGACCAATC
CTGGTTATGTTGGCTGCTTTCATTCTTGTGGTTGCCATATACAATATTTA
AGCTTTTTTGTTGACTGTATTATGAATTGAGTTTGTTAATGGTTAGCACA
TGATGGTTGCACTTTTTAAAAAAAAAAAAAAAAAAA
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