CX299949

Overview
NameCX299949
Unique NameCX299949
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length686
Libraries
Library NameType
SaltLeaf1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX299949 vs. ExPASy Swiss-Prot
Match: NDK_YERP3 (Nucleoside diphosphate kinase OS=Yersinia pseudotuberculosis serotype O:1b (strain IP 31758) GN=ndk PE=3 SV=1)

HSP 1 Score: 105.145 bits (261), Expect = 3.503e-22
Identity = 50/114 (43.86%), Postives = 73/114 (64.04%), Query Frame = 2
Query:   23 VGEIIIRFEKKGFSLKGLKLMTVDRPFAEKHYEDLSSKPFFGSLIEYITSGPVVAMIWEGEGVVKTGRTIIGATNPAQSAPGTIRGDLAIVTGRNIIHGSDSVESAQKEIALWF 364
            +G I  RFE  GF++   K++ + +  AE  Y +   +PFF  L+E++TSGP++  + EGE  V+  R I+GATNP  +  GT+R D A     N +HGSD+VESAQ+EIA +F
Sbjct:   20 IGAIYARFESAGFNIIAAKMLHLTKEQAEGFYAEHKGRPFFDGLVEFMTSGPIMVQVLEGENAVQRHRDIMGATNPDNALAGTLRADFADSFTANAVHGSDAVESAQREIAYFF 133          
BLAST of CX299949 vs. ExPASy Swiss-Prot
Match: NDK_SALAR (Nucleoside diphosphate kinase OS=Salmonella arizonae (strain ATCC BAA-731 / CDC346-86 / RSK2980) GN=ndk PE=3 SV=1)

HSP 1 Score: 105.145 bits (261), Expect = 3.503e-22
Identity = 51/120 (42.50%), Postives = 74/120 (61.67%), Query Frame = 2
Query:   20 LVGEIIIRFEKKGFSLKGLKLMTVDRPFAEKHYEDLSSKPFFGSLIEYITSGPVVAMIWEGEGVVKTGRTIIGATNPAQSAPGTIRGDLAIVTGRNIIHGSDSVESAQKEIALWFPDGPI 379
            ++G I  RFE  GF + G +++ +    A   Y +   KPFF  L+E++TSGP+V  + E E  V+  R ++GATNPA +  GT+R D A     N  HGSDS+ESAQ+EIA +F +G +
Sbjct:   19 VIGSIFARFEAAGFRIVGTRMLHLTVEQARGFYAEHDGKPFFDGLVEFMTSGPIVVSVLESENAVQRHRDLLGATNPANALAGTLRADYADSFTENGTHGSDSLESAQREIAFFFGEGEV 138          
BLAST of CX299949 vs. ExPASy Swiss-Prot
Match: NDK_PSYCK (Nucleoside diphosphate kinase OS=Psychrobacter cryohalolentis (strain K5) GN=ndk PE=3 SV=1)

HSP 1 Score: 105.145 bits (261), Expect = 3.503e-22
Identity = 51/117 (43.59%), Postives = 71/117 (60.68%), Query Frame = 2
Query:   14 GGLVGEIIIRFEKKGFSLKGLKLMTVDRPFAEKHYEDLSSKPFFGSLIEYITSGPVVAMIWEGEGVVKTGRTIIGATNPAQSAPGTIRGDLAIVTGRNIIHGSDSVESAQKEIALWF 364
            G  +G I  RFEK G  +   K+M +D   A   Y + + +PF+  L+ ++TSGPV+  + EGE  + T R I+GATNP  +A GTIR D A     N +HGSDS ESA +EI+ +F
Sbjct:   17 GNNIGAIYDRFEKSGLKIVAAKMMQLDDKKAGGFYAEHAERPFYNDLVSFMTSGPVLVSVLEGENAIATHRDIMGATNPKDAAEGTIRADFASSIDENAVHGSDSAESAAREISYFF 133          
BLAST of CX299949 vs. ExPASy Swiss-Prot
Match: NDK_METRJ (Nucleoside diphosphate kinase OS=Methylobacterium radiotolerans (strain ATCC 27329 / DSM 1819 / JCM 2831) GN=ndk PE=3 SV=1)

HSP 1 Score: 105.145 bits (261), Expect = 3.503e-22
Identity = 54/120 (45.00%), Postives = 73/120 (60.83%), Query Frame = 2
Query:   20 LVGEIIIRFEKKGFSLKGLKLMTVDRPFAEKHYEDLSSKPFFGSLIEYITSGPVVAMIWEGEGVVKTGRTIIGATNPAQSAPGTIRGDLAIVTGRNIIHGSDSVESAQKEIALWFPDGPI 379
            L G +    E+ G  + G + + + +  AEK YE    +PFFG L+ ++TSGPVV  + EGE  V   R ++GATNPAQ+A GTIR   A   G N +HGSDS E+A+ EIA +F D  I
Sbjct:   19 LTGAVNAVIEEAGLRIVGQRRIRMTKEQAEKFYEVHKERPFFGELVTFMTSGPVVVQVLEGENAVAKYREVMGATNPAQAAEGTIRKKFAESVGENTVHGSDSAENAKLEIAQFFKDSDI 138          
BLAST of CX299949 vs. ExPASy Swiss-Prot
Match: NDK_COXBU (Nucleoside diphosphate kinase OS=Coxiella burnetii GN=ndk PE=3 SV=1)

HSP 1 Score: 105.145 bits (261), Expect = 3.503e-22
Identity = 51/122 (41.80%), Postives = 75/122 (61.48%), Query Frame = 2
Query:   20 LVGEIIIRFEKKGFSLKGLKLMTVDRPFAEKHYEDLSSKPFFGSLIEYITSGPVVAMIWEGEGVVKTGRTIIGATNPAQSAPGTIRGDLAIVTGRNIIHGSDSVESAQKEIALWF-PDGPIN 382
            ++G+I  RFEK G  +   K+  + +P AEK Y     +PF+  L++++T GPV+  + EGE  +   R I+GATNP ++ PGTIR D A     N +HGSD  E+A++EIA +F PD   N
Sbjct:   19 VIGQIYSRFEKAGLKIIAAKMCHLSKPQAEKFYAVHKDRPFYPDLVKFMTQGPVMIQVLEGENAIVKNREIMGATNPKEALPGTIRADFADSIDANAVHGSDGPETAKEEIAFFFKPDESFN 140          
BLAST of CX299949 vs. ExPASy Swiss-Prot
Match: NDK_COXBR (Nucleoside diphosphate kinase OS=Coxiella burnetii (strain RSA 331 / Henzerling II) GN=ndk PE=3 SV=1)

HSP 1 Score: 105.145 bits (261), Expect = 3.503e-22
Identity = 51/122 (41.80%), Postives = 75/122 (61.48%), Query Frame = 2
Query:   20 LVGEIIIRFEKKGFSLKGLKLMTVDRPFAEKHYEDLSSKPFFGSLIEYITSGPVVAMIWEGEGVVKTGRTIIGATNPAQSAPGTIRGDLAIVTGRNIIHGSDSVESAQKEIALWF-PDGPIN 382
            ++G+I  RFEK G  +   K+  + +P AEK Y     +PF+  L++++T GPV+  + EGE  +   R I+GATNP ++ PGTIR D A     N +HGSD  E+A++EIA +F PD   N
Sbjct:   19 VIGQIYSRFEKAGLKIIAAKMCHLSKPQAEKFYAVHKDRPFYPDLVKFMTQGPVMIQVLEGENAIVKNREIMGATNPKEALPGTIRADFADSIDANAVHGSDGPETAKEEIAFFFKPDESFN 140          
BLAST of CX299949 vs. ExPASy Swiss-Prot
Match: NDK_COXB2 (Nucleoside diphosphate kinase OS=Coxiella burnetii (strain CbuG_Q212) GN=ndk PE=3 SV=1)

HSP 1 Score: 105.145 bits (261), Expect = 3.503e-22
Identity = 51/122 (41.80%), Postives = 75/122 (61.48%), Query Frame = 2
Query:   20 LVGEIIIRFEKKGFSLKGLKLMTVDRPFAEKHYEDLSSKPFFGSLIEYITSGPVVAMIWEGEGVVKTGRTIIGATNPAQSAPGTIRGDLAIVTGRNIIHGSDSVESAQKEIALWF-PDGPIN 382
            ++G+I  RFEK G  +   K+  + +P AEK Y     +PF+  L++++T GPV+  + EGE  +   R I+GATNP ++ PGTIR D A     N +HGSD  E+A++EIA +F PD   N
Sbjct:   19 VIGQIYSRFEKAGLKIIAAKMCHLSKPQAEKFYAVHKDRPFYPDLVKFMTQGPVMIQVLEGENAIVKNREIMGATNPKEALPGTIRADFADSIDANAVHGSDGPETAKEEIAFFFKPDESFN 140          
BLAST of CX299949 vs. ExPASy Swiss-Prot
Match: NDK_YERPB (Nucleoside diphosphate kinase OS=Yersinia pseudotuberculosis serotype IB (strain PB1/+) GN=ndk PE=3 SV=1)

HSP 1 Score: 104.76 bits (260), Expect = 4.575e-22
Identity = 50/114 (43.86%), Postives = 72/114 (63.16%), Query Frame = 2
Query:   23 VGEIIIRFEKKGFSLKGLKLMTVDRPFAEKHYEDLSSKPFFGSLIEYITSGPVVAMIWEGEGVVKTGRTIIGATNPAQSAPGTIRGDLAIVTGRNIIHGSDSVESAQKEIALWF 364
            +G I  RFE  GF +   K++ + +  AE  Y +   +PFF  L+E++TSGP++  + EGE  V+  R I+GATNP  +  GT+R D A     N +HGSD+VESAQ+EIA +F
Sbjct:   20 IGAIYARFESAGFKIIAAKMLHLTKEQAEGFYAEHKGRPFFDGLVEFMTSGPIMVQVLEGENAVQRHRDIMGATNPDNALAGTLRADFADSFTANAVHGSDAVESAQREIAYFF 133          
BLAST of CX299949 vs. ExPASy Swiss-Prot
Match: NDK_ACIAD (Nucleoside diphosphate kinase OS=Acinetobacter sp. (strain ADP1) GN=ndk PE=3 SV=1)

HSP 1 Score: 104.76 bits (260), Expect = 4.575e-22
Identity = 54/114 (47.37%), Postives = 69/114 (60.53%), Query Frame = 2
Query:   23 VGEIIIRFEKKGFSLKGLKLMTVDRPFAEKHYEDLSSKPFFGSLIEYITSGPVVAMIWEGEGVVKTGRTIIGATNPAQSAPGTIRGDLAIVTGRNIIHGSDSVESAQKEIALWF 364
            +GEII RFEK G     +K   + +  AE  Y +   + FF  L+ ++TSGPVV    EGE  V   R I+GATNP ++APGTIR D A     N  HGSDSV SA++EIA +F
Sbjct:   20 IGEIIARFEKAGLKPVAMKYKHLSQAEAEGFYAEHKERGFFADLVAFMTSGPVVVSALEGENAVLAHREILGATNPKEAAPGTIRADFATSIDENAAHGSDSVASAEREIAYFF 133          
BLAST of CX299949 vs. ExPASy Swiss-Prot
Match: NDK_YERPP (Nucleoside diphosphate kinase OS=Yersinia pestis (strain Pestoides F) GN=ndk PE=3 SV=1)

HSP 1 Score: 104.375 bits (259), Expect = 5.975e-22
Identity = 49/114 (42.98%), Postives = 73/114 (64.04%), Query Frame = 2
Query:   23 VGEIIIRFEKKGFSLKGLKLMTVDRPFAEKHYEDLSSKPFFGSLIEYITSGPVVAMIWEGEGVVKTGRTIIGATNPAQSAPGTIRGDLAIVTGRNIIHGSDSVESAQKEIALWF 364
            +G I  RFE+ GF +   K++ + +  AE  Y +   +PFF  L+E++TSGP++  + EGE  V+  R I+GATNP  +  GT+R D +     N +HGSD+VESAQ+EIA +F
Sbjct:   20 IGAIYARFERAGFKIIAAKMLHLTKEQAEGFYAEHKGRPFFDGLVEFMTSGPIMVQVLEGENAVQRHRDIMGATNPDNALAGTLRADFSDSFTANAVHGSDAVESAQREIAYFF 133          
The following BLAST results are available for this feature:
BLAST of CX299949 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
NDK_YERP33.503e-2243.86Nucleoside diphosphate kinase OS=Yersinia pseudotu... [more]
NDK_SALAR3.503e-2242.50Nucleoside diphosphate kinase OS=Salmonella arizon... [more]
NDK_PSYCK3.503e-2243.59Nucleoside diphosphate kinase OS=Psychrobacter cry... [more]
NDK_METRJ3.503e-2245.00Nucleoside diphosphate kinase OS=Methylobacterium ... [more]
NDK_COXBU3.503e-2241.80Nucleoside diphosphate kinase OS=Coxiella burnetii... [more]
NDK_COXBR3.503e-2241.80Nucleoside diphosphate kinase OS=Coxiella burnetii... [more]
NDK_COXB23.503e-2241.80Nucleoside diphosphate kinase OS=Coxiella burnetii... [more]
NDK_YERPB4.575e-2243.86Nucleoside diphosphate kinase OS=Yersinia pseudotu... [more]
NDK_ACIAD4.575e-2247.37Nucleoside diphosphate kinase OS=Acinetobacter sp.... [more]
NDK_YERPP5.975e-2242.98Nucleoside diphosphate kinase OS=Yersinia pestis (... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionC07004D02SK SaltLeaf1 Citrus clementina cDNA clone C07004D02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX299949 ID=CX299949; Name=CX299949; organism=Citrus clementina; type=EST; length=686bp
AATTCGGCACGAGGGAGGCCTTGTTGGTGAAATCATCATCAGATTTGAGA
AGAAGGGTTTCTCCTTGAAGGGTTTGAAGCTTATGACTGTGGACCGCCCT
TTTGCTGAGAAGCACTATGAGGATTTGTCATCGAAGCCTTTCTTTGGTTC
TCTGATTGAGTACATTACCTCTGGTCCTGTTGTTGCTATGATTTGGGAGG
GTGAAGGTGTTGTTAAGACTGGCCGCACTATTATTGGAGCCACCAACCCT
GCGCAGTCTGCTCCTGGAACCATCCGTGGTGATTTGGCTATCGTGACGGG
CAGGAATATCATCCATGGAAGTGACTCAGTTGAGAGTGCCCAGAAAGAAA
TCGCCTTGTGGTTCCCTGATGGCCCTATTAACTGGCAGAGCAGCCTTCAC
CCTTGGATCTATGAGTAAACTAATGTTTGGTTGAGGAGCCTAATTGTTCC
TGCAGTTAGACTTATCCCTATCCCTATCCCTATTTCCTTATTTATGGTTA
CTCCTTGTTGGTGAACTGTTATGAAGTATTGAGTTAAATTGAGACCAATC
CTGGTTATGTTGGCTGCTTTCATTCTTGTGGTTGCCATATACAATATTTA
AGCTTTTTTGTTGACTGTATTATGAATTGAGTTTGTTAATGGTTAGCACA
TGATGGTTGCACTTTTTAAAAAAAAAAAAAAAAAAA
back to top