CX299949

Overview
NameCX299949
Unique NameCX299949
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length686
Libraries
Library NameType
SaltLeaf1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX299949 vs. ExPASy Swiss-Prot
Match: NDK_YERPN (Nucleoside diphosphate kinase OS=Yersinia pestis bv. Antiqua (strain Nepal516) GN=ndk PE=3 SV=1)

HSP 1 Score: 104.375 bits (259), Expect = 5.975e-22
Identity = 49/114 (42.98%), Postives = 73/114 (64.04%), Query Frame = 2
Query:   23 VGEIIIRFEKKGFSLKGLKLMTVDRPFAEKHYEDLSSKPFFGSLIEYITSGPVVAMIWEGEGVVKTGRTIIGATNPAQSAPGTIRGDLAIVTGRNIIHGSDSVESAQKEIALWF 364
            +G I  RFE+ GF +   K++ + +  AE  Y +   +PFF  L+E++TSGP++  + EGE  V+  R I+GATNP  +  GT+R D +     N +HGSD+VESAQ+EIA +F
Sbjct:   20 IGAIYARFERAGFKIIAAKMLHLTKEQAEGFYAEHKGRPFFDGLVEFMTSGPIMVQVLEGENAVQRHRDIMGATNPDNALAGTLRADFSDSFTANAVHGSDAVESAQREIAYFF 133          
BLAST of CX299949 vs. ExPASy Swiss-Prot
Match: NDK_YERPG (Nucleoside diphosphate kinase OS=Yersinia pestis bv. Antiqua (strain Angola) GN=ndk PE=3 SV=1)

HSP 1 Score: 104.375 bits (259), Expect = 5.975e-22
Identity = 49/114 (42.98%), Postives = 73/114 (64.04%), Query Frame = 2
Query:   23 VGEIIIRFEKKGFSLKGLKLMTVDRPFAEKHYEDLSSKPFFGSLIEYITSGPVVAMIWEGEGVVKTGRTIIGATNPAQSAPGTIRGDLAIVTGRNIIHGSDSVESAQKEIALWF 364
            +G I  RFE+ GF +   K++ + +  AE  Y +   +PFF  L+E++TSGP++  + EGE  V+  R I+GATNP  +  GT+R D +     N +HGSD+VESAQ+EIA +F
Sbjct:   20 IGAIYARFERAGFKIIAAKMLHLTKEQAEGFYAEHKGRPFFDGLVEFMTSGPIMVQVLEGENAVQRHRDIMGATNPDNALAGTLRADFSDSFTANAVHGSDAVESAQREIAYFF 133          
BLAST of CX299949 vs. ExPASy Swiss-Prot
Match: NDK_YERPE (Nucleoside diphosphate kinase OS=Yersinia pestis GN=ndk PE=3 SV=1)

HSP 1 Score: 104.375 bits (259), Expect = 5.975e-22
Identity = 49/114 (42.98%), Postives = 73/114 (64.04%), Query Frame = 2
Query:   23 VGEIIIRFEKKGFSLKGLKLMTVDRPFAEKHYEDLSSKPFFGSLIEYITSGPVVAMIWEGEGVVKTGRTIIGATNPAQSAPGTIRGDLAIVTGRNIIHGSDSVESAQKEIALWF 364
            +G I  RFE+ GF +   K++ + +  AE  Y +   +PFF  L+E++TSGP++  + EGE  V+  R I+GATNP  +  GT+R D +     N +HGSD+VESAQ+EIA +F
Sbjct:   20 IGAIYARFERAGFKIIAAKMLHLTKEQAEGFYAEHKGRPFFDGLVEFMTSGPIMVQVLEGENAVQRHRDIMGATNPDNALAGTLRADFSDSFTANAVHGSDAVESAQREIAYFF 133          
BLAST of CX299949 vs. ExPASy Swiss-Prot
Match: NDK_YERPA (Nucleoside diphosphate kinase OS=Yersinia pestis bv. Antiqua (strain Antiqua) GN=ndk PE=3 SV=1)

HSP 1 Score: 104.375 bits (259), Expect = 5.975e-22
Identity = 49/114 (42.98%), Postives = 73/114 (64.04%), Query Frame = 2
Query:   23 VGEIIIRFEKKGFSLKGLKLMTVDRPFAEKHYEDLSSKPFFGSLIEYITSGPVVAMIWEGEGVVKTGRTIIGATNPAQSAPGTIRGDLAIVTGRNIIHGSDSVESAQKEIALWF 364
            +G I  RFE+ GF +   K++ + +  AE  Y +   +PFF  L+E++TSGP++  + EGE  V+  R I+GATNP  +  GT+R D +     N +HGSD+VESAQ+EIA +F
Sbjct:   20 IGAIYARFERAGFKIIAAKMLHLTKEQAEGFYAEHKGRPFFDGLVEFMTSGPIMVQVLEGENAVQRHRDIMGATNPDNALAGTLRADFSDSFTANAVHGSDAVESAQREIAYFF 133          
BLAST of CX299949 vs. ExPASy Swiss-Prot
Match: NDK_PROMH (Nucleoside diphosphate kinase OS=Proteus mirabilis (strain HI4320) GN=ndk PE=3 SV=1)

HSP 1 Score: 104.375 bits (259), Expect = 5.975e-22
Identity = 50/120 (41.67%), Postives = 74/120 (61.67%), Query Frame = 2
Query:   20 LVGEIIIRFEKKGFSLKGLKLMTVDRPFAEKHYEDLSSKPFFGSLIEYITSGPVVAMIWEGEGVVKTGRTIIGATNPAQSAPGTIRGDLAIVTGRNIIHGSDSVESAQKEIALWFPDGPI 379
            ++G I  RFE  GFS+   K++ + R  AE  YE+   +PFF  L+E++TSGP++  + EGE  ++  R ++GATNP  +  GT+R D A     N +HGSDS  SA +EIA +F +  I
Sbjct:   19 VIGAIYNRFESAGFSIVAAKMLHLTREQAEGFYEEHKGRPFFDGLVEFMTSGPIMVQVLEGENAIQRHRDLMGATNPDNALAGTLRADYADSFTENAVHGSDSEASAAREIAYFFTENEI 138          
BLAST of CX299949 vs. ExPASy Swiss-Prot
Match: NDK_METEP (Nucleoside diphosphate kinase OS=Methylobacterium extorquens (strain PA1) GN=ndk PE=3 SV=1)

HSP 1 Score: 104.375 bits (259), Expect = 5.975e-22
Identity = 53/120 (44.17%), Postives = 73/120 (60.83%), Query Frame = 2
Query:   20 LVGEIIIRFEKKGFSLKGLKLMTVDRPFAEKHYEDLSSKPFFGSLIEYITSGPVVAMIWEGEGVVKTGRTIIGATNPAQSAPGTIRGDLAIVTGRNIIHGSDSVESAQKEIALWFPDGPI 379
            + G +    E  G  + G + + + R  AEK YE    +PFFG L+E++TSGPVV  + EGE  V   R ++GATNPAQ+A GTIR   A   G N +HGSDS ++A+ EIA +F +  I
Sbjct:   19 ITGAVNAVIEAAGLRIVGQRRIRMTREQAEKFYEVHKERPFFGELVEFMTSGPVVVQVLEGENAVAKYREVMGATNPAQAADGTIRKQFAESVGENTVHGSDSADNARLEIAQFFNEADI 138          
BLAST of CX299949 vs. ExPASy Swiss-Prot
Match: NDK_BDEBA (Nucleoside diphosphate kinase OS=Bdellovibrio bacteriovorus GN=ndk PE=3 SV=1)

HSP 1 Score: 104.375 bits (259), Expect = 5.975e-22
Identity = 48/114 (42.11%), Postives = 72/114 (63.16%), Query Frame = 2
Query:   23 VGEIIIRFEKKGFSLKGLKLMTVDRPFAEKHYEDLSSKPFFGSLIEYITSGPVVAMIWEGEGVVKTGRTIIGATNPAQSAPGTIRGDLAIVTGRNIIHGSDSVESAQKEIALWF 364
            +G+I+  FE  G  +   K+  +    AE+ Y +  ++PFFG L+ ++TSGPV+ M  +GEG V   R I+GAT+P ++ PGT+R       G N +HGSDS ESA +E+AL+F
Sbjct:   20 IGDIVSMFEANGLKIAAAKITVLTTAKAEEFYAEHKARPFFGELVSFMTSGPVMLMCLQGEGAVLKNREIMGATDPKKANPGTVRAKFGDNVGENAVHGSDSPESAARELALFF 133          
BLAST of CX299949 vs. ExPASy Swiss-Prot
Match: NDK_SHEPA (Nucleoside diphosphate kinase OS=Shewanella pealeana (strain ATCC 700345 / ANG-SQ1) GN=ndk PE=3 SV=1)

HSP 1 Score: 103.99 bits (258), Expect = 7.804e-22
Identity = 51/114 (44.74%), Postives = 72/114 (63.16%), Query Frame = 2
Query:   23 VGEIIIRFEKKGFSLKGLKLMTVDRPFAEKHYEDLSSKPFFGSLIEYITSGPVVAMIWEGEGVVKTGRTIIGATNPAQSAPGTIRGDLAIVTGRNIIHGSDSVESAQKEIALWF 364
            +G I  RFE  G  +   K++ + +  AE  Y + S +PFFG+L+ ++TSGP++    EGE  V   R I+GATNPA++A GTIR D A     N  HGSDSV SA++E+A +F
Sbjct:   20 IGAIYNRFETAGLKIIASKMIHLSKEQAEGFYAEHSERPFFGALVAFMTSGPIMVQTLEGENAVLAHREILGATNPAEAAEGTIRADFAESIDENAAHGSDSVASAEREVAYFF 133          
BLAST of CX299949 vs. ExPASy Swiss-Prot
Match: NDK_SHEHH (Nucleoside diphosphate kinase OS=Shewanella halifaxensis (strain HAW-EB4) GN=ndk PE=3 SV=1)

HSP 1 Score: 103.99 bits (258), Expect = 7.804e-22
Identity = 52/114 (45.61%), Postives = 72/114 (63.16%), Query Frame = 2
Query:   23 VGEIIIRFEKKGFSLKGLKLMTVDRPFAEKHYEDLSSKPFFGSLIEYITSGPVVAMIWEGEGVVKTGRTIIGATNPAQSAPGTIRGDLAIVTGRNIIHGSDSVESAQKEIALWF 364
            +G I  RFE  G  +   K++ + +  AE  Y + S +PFFG+L+ ++TSGP++    EGE  V   R I+GATNPA++A GTIR D A     N  HGSDSV SA++EIA +F
Sbjct:   20 IGAIYNRFETAGLKIIASKMVHLSQEQAEGFYAEHSERPFFGALVAFMTSGPIMVQTLEGENAVLAHREILGATNPAEAAEGTIRADFAESIDENAAHGSDSVASAEREIAYFF 133          
BLAST of CX299949 vs. ExPASy Swiss-Prot
Match: NDK_METSB (Nucleoside diphosphate kinase OS=Methylocella silvestris (strain BL2 / DSM 15510 / NCIMB 13906) GN=ndk PE=3 SV=1)

HSP 1 Score: 103.99 bits (258), Expect = 7.804e-22
Identity = 53/120 (44.17%), Postives = 72/120 (60.00%), Query Frame = 2
Query:   20 LVGEIIIRFEKKGFSLKGLKLMTVDRPFAEKHYEDLSSKPFFGSLIEYITSGPVVAMIWEGEGVVKTGRTIIGATNPAQSAPGTIRGDLAIVTGRNIIHGSDSVESAQKEIALWFPDGPI 379
            L G I    EK G  +   K + + RP AE  Y     +PFFG+L++ + SGPVV  + EGE  +K  R ++GAT+PA++APGTIR + A+  G N  HGSD+ E+A  EIA WF    I
Sbjct:   19 LTGAINALIEKAGLRIIAQKRVQITRPQAETFYAVHKERPFFGALVDTMISGPVVVQVLEGENAIKAYRDVLGATDPAKAAPGTIRKEFALSVGENSGHGSDASETAAIEIAQWFSGNEI 138          
The following BLAST results are available for this feature:
BLAST of CX299949 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
NDK_YERPN5.975e-2242.98Nucleoside diphosphate kinase OS=Yersinia pestis b... [more]
NDK_YERPG5.975e-2242.98Nucleoside diphosphate kinase OS=Yersinia pestis b... [more]
NDK_YERPE5.975e-2242.98Nucleoside diphosphate kinase OS=Yersinia pestis G... [more]
NDK_YERPA5.975e-2242.98Nucleoside diphosphate kinase OS=Yersinia pestis b... [more]
NDK_PROMH5.975e-2241.67Nucleoside diphosphate kinase OS=Proteus mirabilis... [more]
NDK_METEP5.975e-2244.17Nucleoside diphosphate kinase OS=Methylobacterium ... [more]
NDK_BDEBA5.975e-2242.11Nucleoside diphosphate kinase OS=Bdellovibrio bact... [more]
NDK_SHEPA7.804e-2244.74Nucleoside diphosphate kinase OS=Shewanella pealea... [more]
NDK_SHEHH7.804e-2245.61Nucleoside diphosphate kinase OS=Shewanella halifa... [more]
NDK_METSB7.804e-2244.17Nucleoside diphosphate kinase OS=Methylocella silv... [more]

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Properties
Property NameValue
Genbank descriptionC07004D02SK SaltLeaf1 Citrus clementina cDNA clone C07004D02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX299949 ID=CX299949; Name=CX299949; organism=Citrus clementina; type=EST; length=686bp
AATTCGGCACGAGGGAGGCCTTGTTGGTGAAATCATCATCAGATTTGAGA
AGAAGGGTTTCTCCTTGAAGGGTTTGAAGCTTATGACTGTGGACCGCCCT
TTTGCTGAGAAGCACTATGAGGATTTGTCATCGAAGCCTTTCTTTGGTTC
TCTGATTGAGTACATTACCTCTGGTCCTGTTGTTGCTATGATTTGGGAGG
GTGAAGGTGTTGTTAAGACTGGCCGCACTATTATTGGAGCCACCAACCCT
GCGCAGTCTGCTCCTGGAACCATCCGTGGTGATTTGGCTATCGTGACGGG
CAGGAATATCATCCATGGAAGTGACTCAGTTGAGAGTGCCCAGAAAGAAA
TCGCCTTGTGGTTCCCTGATGGCCCTATTAACTGGCAGAGCAGCCTTCAC
CCTTGGATCTATGAGTAAACTAATGTTTGGTTGAGGAGCCTAATTGTTCC
TGCAGTTAGACTTATCCCTATCCCTATCCCTATTTCCTTATTTATGGTTA
CTCCTTGTTGGTGAACTGTTATGAAGTATTGAGTTAAATTGAGACCAATC
CTGGTTATGTTGGCTGCTTTCATTCTTGTGGTTGCCATATACAATATTTA
AGCTTTTTTGTTGACTGTATTATGAATTGAGTTTGTTAATGGTTAGCACA
TGATGGTTGCACTTTTTAAAAAAAAAAAAAAAAAAA
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