CX299949

Overview
NameCX299949
Unique NameCX299949
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length686
Libraries
Library NameType
SaltLeaf1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX299949 vs. ExPASy Swiss-Prot
Match: NDK_RHOCS (Nucleoside diphosphate kinase OS=Rhodospirillum centenum (strain ATCC 51521 / SW) GN=ndk PE=3 SV=1)

HSP 1 Score: 102.834 bits (255), Expect = 1.739e-21
Identity = 53/115 (46.09%), Postives = 72/115 (62.61%), Query Frame = 2
Query:   20 LVGEIIIRFEKKGFSLKGLKLMTVDRPFAEKHYEDLSSKPFFGSLIEYITSGPVVAMIWEGEGVVKTGRTIIGATNPAQSAPGTIRGDLAIVTGRNIIHGSDSVESAQKEIALWF 364
            L G+I  RFE+ G  +   K + + R  AE+ Y   + +PF+G L+ ++ SGPVV  + EGE  V   R I+GATNPA +APGTIR D A     N +HGSDS+E+A  EIA +F
Sbjct:   19 LTGKINARFEEAGLRIVAQKRIRLTREQAEQFYIVHAERPFYGELVSFMISGPVVVQVLEGENAVARNREIMGATNPANAAPGTIRKDFAESIEANSVHGSDSLENAATEIAYFF 133          
BLAST of CX299949 vs. ExPASy Swiss-Prot
Match: NDK_PSEPF (Nucleoside diphosphate kinase OS=Pseudomonas fluorescens (strain Pf0-1) GN=ndk PE=3 SV=1)

HSP 1 Score: 102.834 bits (255), Expect = 1.739e-21
Identity = 50/115 (43.48%), Postives = 72/115 (62.61%), Query Frame = 2
Query:   20 LVGEIIIRFEKKGFSLKGLKLMTVDRPFAEKHYEDLSSKPFFGSLIEYITSGPVVAMIWEGEGVVKTGRTIIGATNPAQSAPGTIRGDLAIVTGRNIIHGSDSVESAQKEIALWF 364
            ++G+I  RFE  G  +   KL  + +  AE  Y + S++ FFG L+ ++TSGPVV  + EGE  +   R ++GATNP ++APGTIR D A     N +HGSDS  +A +EIA +F
Sbjct:   19 VIGKITTRFEDAGLRVVASKLKQLSKAEAEGFYAEHSARGFFGELVAFMTSGPVVVQVLEGENAIARNRELMGATNPKEAAPGTIRADFAESIDANAVHGSDSEAAAAREIAYFF 133          
BLAST of CX299949 vs. ExPASy Swiss-Prot
Match: NDK_PSEMY (Nucleoside diphosphate kinase OS=Pseudomonas mendocina (strain ymp) GN=ndk PE=3 SV=1)

HSP 1 Score: 102.834 bits (255), Expect = 1.739e-21
Identity = 50/115 (43.48%), Postives = 71/115 (61.74%), Query Frame = 2
Query:   20 LVGEIIIRFEKKGFSLKGLKLMTVDRPFAEKHYEDLSSKPFFGSLIEYITSGPVVAMIWEGEGVVKTGRTIIGATNPAQSAPGTIRGDLAIVTGRNIIHGSDSVESAQKEIALWF 364
            ++GEI  RFEK G  +   K++ +    A   Y + S + FF  L+ ++TSGPV+  + EGE  V   R ++GATNP ++APGTIR D A+    N +HGSDS  SA +EIA +F
Sbjct:   19 VIGEITTRFEKAGLRVVASKMVQLSEREAAGFYAEHSERGFFKDLVAFMTSGPVIVQVLEGEDAVLKNRELMGATNPKEAAPGTIRADFAVSIDENAVHGSDSEASAAREIAYFF 133          
BLAST of CX299949 vs. ExPASy Swiss-Prot
Match: NDK_HAHCH (Nucleoside diphosphate kinase OS=Hahella chejuensis (strain KCTC 2396) GN=ndk PE=3 SV=1)

HSP 1 Score: 102.834 bits (255), Expect = 1.739e-21
Identity = 49/120 (40.83%), Postives = 72/120 (60.00%), Query Frame = 2
Query:   20 LVGEIIIRFEKKGFSLKGLKLMTVDRPFAEKHYEDLSSKPFFGSLIEYITSGPVVAMIWEGEGVVKTGRTIIGATNPAQSAPGTIRGDLAIVTGRNIIHGSDSVESAQKEIALWFPDGPI 379
            ++GEI  RFEK G  +   K++ + +  AE  Y +   + FF  L+ ++TSGPVV    EGE  +   R ++GATNP ++ PGTIR D A     N +HGSDS  SA++E+A +F +  I
Sbjct:   19 VIGEIYSRFEKAGLRIVAAKMLHLSQEQAEGFYAEHKERGFFPDLVAFMTSGPVVVQALEGENAIALNRQLMGATNPKEAEPGTIRADFASSIDANAVHGSDSAASAEREVAYFFSENEI 138          
BLAST of CX299949 vs. ExPASy Swiss-Prot
Match: NDK_FERNB (Nucleoside diphosphate kinase OS=Fervidobacterium nodosum (strain ATCC 35602 / DSM 5306 / Rt17-B1) GN=ndk PE=3 SV=1)

HSP 1 Score: 102.834 bits (255), Expect = 1.739e-21
Identity = 50/121 (41.32%), Postives = 79/121 (65.29%), Query Frame = 2
Query:   17 GLVGEIIIRFEKKGFSLKGLKLMTVDRPFAEKHYEDLSSKPFFGSLIEYITSGPVVAMIWEGEGVVKTGRTIIGATNPAQSAPGTIRGDLAIVTGRNIIHGSDSVESAQKEIALWFPDGPI 379
            GLVGEI+ RFE++G  + GLK + + R  AEK YE    K F+  L+E++ SGP+VA+I E    ++  R I+GAT+P ++  G+IRG+ A+   +N+IH SDS ++  +E +++F    I
Sbjct:   16 GLVGEILKRFEQRGIKIVGLKFLKMTREQAEKLYEPHKGKQFYDELLEFMLSGPIVAVILEAPRCLELVRHIVGATDPLKAEAGSIRGEFALTVTKNLIHASDSTDNFIRESSIFFSPSEI 136          
BLAST of CX299949 vs. ExPASy Swiss-Prot
Match: NDK_CAMJE (Nucleoside diphosphate kinase OS=Campylobacter jejuni GN=ndk PE=1 SV=1)

HSP 1 Score: 102.834 bits (255), Expect = 1.739e-21
Identity = 51/121 (42.15%), Postives = 73/121 (60.33%), Query Frame = 2
Query:   17 GLVGEIIIRFEKKGFSLKGLKLMTVDRPFAEKHYEDLSSKPFFGSLIEYITSGPVVAMIWEGEGVVKTGRTIIGATNPAQSAPGTIRGDLAIVTGRNIIHGSDSVESAQKEIALWFPDGPI 379
            G++G+I+ RFE  G  +  +K + + +  AE  Y     +PFF  L+E++ SGPVV  I EGEG V   R ++GATNP ++  GTIR D A     N +HGSDS+E+A+ EI  +F    I
Sbjct:   16 GVIGKILDRFESNGLRIAAMKKVQLSKEQAENFYAVHKERPFFKDLVEFMISGPVVVSILEGEGAVLKNRDLMGATNPKEAKAGTIRADFAESIDANAVHGSDSLENAKIEIEFFFKPNEI 136          
BLAST of CX299949 vs. ExPASy Swiss-Prot
Match: NDK_BORPE (Nucleoside diphosphate kinase OS=Bordetella pertussis GN=ndk PE=3 SV=1)

HSP 1 Score: 102.834 bits (255), Expect = 1.739e-21
Identity = 46/117 (39.32%), Postives = 74/117 (63.25%), Query Frame = 2
Query:   20 LVGEIIIRFEKKGFSLKGLKLMTVDRPFAEKHYEDLSSKPFFGSLIEYITSGPVVAMIWEGEGVVKTGRTIIGATNPAQSAPGTIRGDLAIVTGRNIIHGSDSVESAQKEIALWFPD 370
            +VG+I+ RFE+ G  +   ++  + R  AE+ Y     +PFF  L++++ SGPV   + EGE  ++  R ++GAT+P ++APGTIR D A     N +HGSD+ E+A  E+A +FP+
Sbjct:   19 VVGQIVARFEQAGLKVIAARMQQLSRTDAERFYAVHKERPFFKDLVDFMVSGPVFVQVLEGESAIQKNRDLMGATDPKKAAPGTIRADFADSIDANAVHGSDAPETAAVEVAFFFPE 135          
BLAST of CX299949 vs. ExPASy Swiss-Prot
Match: NDK_BORPA (Nucleoside diphosphate kinase OS=Bordetella parapertussis GN=ndk PE=3 SV=1)

HSP 1 Score: 102.834 bits (255), Expect = 1.739e-21
Identity = 46/117 (39.32%), Postives = 74/117 (63.25%), Query Frame = 2
Query:   20 LVGEIIIRFEKKGFSLKGLKLMTVDRPFAEKHYEDLSSKPFFGSLIEYITSGPVVAMIWEGEGVVKTGRTIIGATNPAQSAPGTIRGDLAIVTGRNIIHGSDSVESAQKEIALWFPD 370
            +VG+I+ RFE+ G  +   ++  + R  AE+ Y     +PFF  L++++ SGPV   + EGE  ++  R ++GAT+P ++APGTIR D A     N +HGSD+ E+A  E+A +FP+
Sbjct:   19 VVGQIVARFEQAGLKVIAARMQQLSRTDAERFYAVHKERPFFKDLVDFMVSGPVFVQVLEGESAIQKNRDLMGATDPKKAAPGTIRADFADSIDANAVHGSDAPETAAVEVAFFFPE 135          
BLAST of CX299949 vs. ExPASy Swiss-Prot
Match: NDK_BORBR (Nucleoside diphosphate kinase OS=Bordetella bronchiseptica GN=ndk PE=3 SV=1)

HSP 1 Score: 102.834 bits (255), Expect = 1.739e-21
Identity = 46/117 (39.32%), Postives = 74/117 (63.25%), Query Frame = 2
Query:   20 LVGEIIIRFEKKGFSLKGLKLMTVDRPFAEKHYEDLSSKPFFGSLIEYITSGPVVAMIWEGEGVVKTGRTIIGATNPAQSAPGTIRGDLAIVTGRNIIHGSDSVESAQKEIALWFPD 370
            +VG+I+ RFE+ G  +   ++  + R  AE+ Y     +PFF  L++++ SGPV   + EGE  ++  R ++GAT+P ++APGTIR D A     N +HGSD+ E+A  E+A +FP+
Sbjct:   19 VVGQIVARFEQAGLKVIAARMQQLSRTDAERFYAVHKERPFFKDLVDFMVSGPVFVQVLEGESAIQKNRDLMGATDPKKAAPGTIRADFADSIDANAVHGSDAPETAAVEVAFFFPE 135          
BLAST of CX299949 vs. ExPASy Swiss-Prot
Match: NDK_PHOPR (Nucleoside diphosphate kinase OS=Photobacterium profundum GN=ndk PE=3 SV=1)

HSP 1 Score: 102.449 bits (254), Expect = 2.271e-21
Identity = 51/120 (42.50%), Postives = 72/120 (60.00%), Query Frame = 2
Query:   20 LVGEIIIRFEKKGFSLKGLKLMTVDRPFAEKHYEDLSSKPFFGSLIEYITSGPVVAMIWEGEGVVKTGRTIIGATNPAQSAPGTIRGDLAIVTGRNIIHGSDSVESAQKEIALWFPDGPI 379
            L+G I  RFE  G  +   K++ +D   A+  Y +   KPFF  L+E++TSGPV+  + EGE  +   R ++G TNP  +A GTIR D A+    N +HGSDS ESA +EIA +F +  I
Sbjct:   19 LIGAIYQRFENAGLKIVASKMVHLDATKAQGFYAEHEEKPFFNELVEFMTSGPVMVQVLEGEDAIHRYRELMGTTNPENAACGTIRSDFALSMRYNSVHGSDSPESAAREIAYFFTEDEI 138          
The following BLAST results are available for this feature:
BLAST of CX299949 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
NDK_RHOCS1.739e-2146.09Nucleoside diphosphate kinase OS=Rhodospirillum ce... [more]
NDK_PSEPF1.739e-2143.48Nucleoside diphosphate kinase OS=Pseudomonas fluor... [more]
NDK_PSEMY1.739e-2143.48Nucleoside diphosphate kinase OS=Pseudomonas mendo... [more]
NDK_HAHCH1.739e-2140.83Nucleoside diphosphate kinase OS=Hahella chejuensi... [more]
NDK_FERNB1.739e-2141.32Nucleoside diphosphate kinase OS=Fervidobacterium ... [more]
NDK_CAMJE1.739e-2142.15Nucleoside diphosphate kinase OS=Campylobacter jej... [more]
NDK_BORPE1.739e-2139.32Nucleoside diphosphate kinase OS=Bordetella pertus... [more]
NDK_BORPA1.739e-2139.32Nucleoside diphosphate kinase OS=Bordetella parape... [more]
NDK_BORBR1.739e-2139.32Nucleoside diphosphate kinase OS=Bordetella bronch... [more]
NDK_PHOPR2.271e-2142.50Nucleoside diphosphate kinase OS=Photobacterium pr... [more]

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Properties
Property NameValue
Genbank descriptionC07004D02SK SaltLeaf1 Citrus clementina cDNA clone C07004D02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX299949 ID=CX299949; Name=CX299949; organism=Citrus clementina; type=EST; length=686bp
AATTCGGCACGAGGGAGGCCTTGTTGGTGAAATCATCATCAGATTTGAGA
AGAAGGGTTTCTCCTTGAAGGGTTTGAAGCTTATGACTGTGGACCGCCCT
TTTGCTGAGAAGCACTATGAGGATTTGTCATCGAAGCCTTTCTTTGGTTC
TCTGATTGAGTACATTACCTCTGGTCCTGTTGTTGCTATGATTTGGGAGG
GTGAAGGTGTTGTTAAGACTGGCCGCACTATTATTGGAGCCACCAACCCT
GCGCAGTCTGCTCCTGGAACCATCCGTGGTGATTTGGCTATCGTGACGGG
CAGGAATATCATCCATGGAAGTGACTCAGTTGAGAGTGCCCAGAAAGAAA
TCGCCTTGTGGTTCCCTGATGGCCCTATTAACTGGCAGAGCAGCCTTCAC
CCTTGGATCTATGAGTAAACTAATGTTTGGTTGAGGAGCCTAATTGTTCC
TGCAGTTAGACTTATCCCTATCCCTATCCCTATTTCCTTATTTATGGTTA
CTCCTTGTTGGTGAACTGTTATGAAGTATTGAGTTAAATTGAGACCAATC
CTGGTTATGTTGGCTGCTTTCATTCTTGTGGTTGCCATATACAATATTTA
AGCTTTTTTGTTGACTGTATTATGAATTGAGTTTGTTAATGGTTAGCACA
TGATGGTTGCACTTTTTAAAAAAAAAAAAAAAAAAA
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