CX299949

Overview
NameCX299949
Unique NameCX299949
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length686
Libraries
Library NameType
SaltLeaf1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX299949 vs. ExPASy Swiss-Prot
Match: NDK_OCEIH (Nucleoside diphosphate kinase OS=Oceanobacillus iheyensis GN=ndk PE=3 SV=1)

HSP 1 Score: 152.14 bits (383), Expect = 2.499e-36
Identity = 70/132 (53.03%), Postives = 93/132 (70.45%), Query Frame = 2
Query:   20 LVGEIIIRFEKKGFSLKGLKLMTVDRPFAEKHYEDLSSKPFFGSLIEYITSGPVVAMIWEGEGVVKTGRTIIGATNPAQSAPGTIRGDLAIVTGRNIIHGSDSVESAQKEIALWFPDGPI-NWQSSLHPWIY 412
            L+GEI+ RFE KG+ L G KLM V    AE HY +   +PFFG L+++ITSGPV AM+WEGE V+ T R ++G TNP ++ P TIRGD  I  G+NIIHGSDS ESA++EI L+F +  I +++   + WIY
Sbjct:   17 LIGEIVKRFETKGYKLAGAKLMQVSNQLAETHYSEHKERPFFGELVDFITSGPVFAMVWEGENVIATARKMMGKTNPLEADPSTIRGDFGISVGKNIIHGSDSAESAEREITLFFTENEIVSYEKQANNWIY 148          
BLAST of CX299949 vs. ExPASy Swiss-Prot
Match: NDK_DESRM (Nucleoside diphosphate kinase OS=Desulfotomaculum reducens (strain MI-1) GN=ndk PE=3 SV=1)

HSP 1 Score: 152.14 bits (383), Expect = 2.499e-36
Identity = 71/134 (52.99%), Postives = 101/134 (75.37%), Query Frame = 2
Query:   17 GLVGEIIIRFEKKGFSLKGLKLMTVDRPFAEKHYEDLSSKPFFGSLIEYITSGPVVAMIWEGEGVVKTGRTIIGATNPAQSAPGTIRGDLAIVTGRNIIHGSDSVESAQKEIALWF-PDGPINWQSSLHPWIYE 415
            GL+G+II +FE+KG+ + GLK+M + R  AE+HY + + KPFF  L+++ITSGPVVAM+ EG+ VV T R ++GATNP ++APGTIR    +  GRNIIHGSDS+ESAQ+EI ++F  +  I++  ++  WIYE
Sbjct:   16 GLIGQIISKFEQKGYKIVGLKMMQISREVAERHYGEHAGKPFFNGLVDFITSGPVVAMVIEGKDVVTTAREMMGATNPLKAAPGTIRATFGVDVGRNIIHGSDSLESAQREIGIFFKSEELIDYDRAIDTWIYE 149          
BLAST of CX299949 vs. ExPASy Swiss-Prot
Match: NDK_BACHD (Nucleoside diphosphate kinase OS=Bacillus halodurans GN=ndk PE=3 SV=1)

HSP 1 Score: 152.14 bits (383), Expect = 2.499e-36
Identity = 70/131 (53.44%), Postives = 95/131 (72.52%), Query Frame = 2
Query:   20 LVGEIIIRFEKKGFSLKGLKLMTVDRPFAEKHYEDLSSKPFFGSLIEYITSGPVVAMIWEGEGVVKTGRTIIGATNPAQSAPGTIRGDLAIVTGRNIIHGSDSVESAQKEIALWFPDGPIN-WQSSLHPWI 409
            L+GEI+ RFEKKGF+L G KLMTV +  AE HY +   +PFFG L+++ITSGPV AM+WEGE V+ T R ++GATNPA + PGTIRGD  +    N+IHGSDS ESA++EI ++F    +N +   ++ W+
Sbjct:   17 LIGEIVSRFEKKGFTLIGAKLMTVTKEQAETHYAEHKERPFFGELVDFITSGPVFAMVWEGENVIATARKMMGATNPADAEPGTIRGDFGVQVAMNVIHGSDSPESAKREIDIFFDSSELNEYDKVVNRWV 147          
BLAST of CX299949 vs. ExPASy Swiss-Prot
Match: NDK3_MOUSE (Nucleoside diphosphate kinase 3 OS=Mus musculus GN=Nme3 PE=2 SV=3)

HSP 1 Score: 152.14 bits (383), Expect = 2.499e-36
Identity = 70/133 (52.63%), Postives = 93/133 (69.92%), Query Frame = 2
Query:   20 LVGEIIIRFEKKGFSLKGLKLMTVDRPFAEKHYEDLSSKPFFGSLIEYITSGPVVAMIWEGEGVVKTGRTIIGATNPAQSAPGTIRGDLAIVTGRNIIHGSDSVESAQKEIALWFPDGP-INWQSSLHPWIYE 415
            LVGEI+ RFE+KGF L  LKL+        +HY +L  KPF+  L++Y++SGPVVAM+W+G  VV   R +IGAT+P  + PGTIRGD  +  G+N+IHGSDSVESA +EIALWF +   + W+ S   W+YE
Sbjct:   37 LVGEIVRRFERKGFKLVALKLVQASEELLREHYVELREKPFYSRLVKYMSSGPVVAMVWQGLDVVHASRALIGATDPGDAMPGTIRGDFCMEVGKNVIHGSDSVESAHREIALWFREAELLCWEDSAGHWLYE 169          
BLAST of CX299949 vs. ExPASy Swiss-Prot
Match: NDK_PROM1 (Nucleoside diphosphate kinase OS=Prochlorococcus marinus (strain NATL1A) GN=ndk PE=3 SV=1)

HSP 1 Score: 151.369 bits (381), Expect = 4.262e-36
Identity = 72/134 (53.73%), Postives = 93/134 (69.40%), Query Frame = 2
Query:   17 GLVGEIIIRFEKKGFSLKGLKLMTVDRPFAEKHYEDLSSKPFFGSLIEYITSGPVVAMIWEGEGVVKTGRTIIGATNPAQSAPGTIRGDLAIVTGRNIIHGSDSVESAQKEIALWFPDGP-INWQSSLHPWIYE 415
            GL+ EI+ RFE KGF L GLK +T  +  AEKHY     +PFF  L+++ITSGPVVAM+WEGEGV+ + R +IGAT P ++ PGTIRGDLA+  GRN+IHGSD  ++A  EI LWF +   ++W  S   W  E
Sbjct:   18 GLIAEILGRFETKGFKLVGLKQLTPSKELAEKHYGVHKDRPFFSGLVDFITSGPVVAMVWEGEGVIASARKLIGATKPLEAEPGTIRGDLAVNIGRNVIHGSDGSDTAVFEINLWFQENELVDWNPSDQAWRVE 151          
BLAST of CX299949 vs. ExPASy Swiss-Prot
Match: NDK_PROMT (Nucleoside diphosphate kinase OS=Prochlorococcus marinus (strain NATL2A) GN=ndk PE=3 SV=1)

HSP 1 Score: 150.984 bits (380), Expect = 5.567e-36
Identity = 71/134 (52.99%), Postives = 93/134 (69.40%), Query Frame = 2
Query:   17 GLVGEIIIRFEKKGFSLKGLKLMTVDRPFAEKHYEDLSSKPFFGSLIEYITSGPVVAMIWEGEGVVKTGRTIIGATNPAQSAPGTIRGDLAIVTGRNIIHGSDSVESAQKEIALWFPDGP-INWQSSLHPWIYE 415
            GL+ EI+ RFE KGF L GLK +T  +  AEKHY     +PFF  L+++ITSGPV+AM+WEGEGV+ + R +IGAT P ++ PGTIRGDLA+  GRN+IHGSD  ++A  EI LWF +   ++W  S   W  E
Sbjct:   18 GLIAEILGRFETKGFKLVGLKQLTPSKELAEKHYGVHKDRPFFSGLVDFITSGPVIAMVWEGEGVIASARKLIGATKPLEAEPGTIRGDLAVNIGRNVIHGSDGSDTAVFEINLWFQENELVDWNPSDQAWRVE 151          
BLAST of CX299949 vs. ExPASy Swiss-Prot
Match: NDK_PROMM (Nucleoside diphosphate kinase OS=Prochlorococcus marinus (strain MIT 9313) GN=ndk PE=3 SV=1)

HSP 1 Score: 150.599 bits (379), Expect = 7.270e-36
Identity = 73/134 (54.48%), Postives = 93/134 (69.40%), Query Frame = 2
Query:   17 GLVGEIIIRFEKKGFSLKGLKLMTVDRPFAEKHYEDLSSKPFFGSLIEYITSGPVVAMIWEGEGVVKTGRTIIGATNPAQSAPGTIRGDLAIVTGRNIIHGSDSVESAQKEIALWFPDGPIN-WQSSLHPWIYE 415
            GLVGEI+ RFE+KGF L GLK +T  R  A +HY     +PFF  L+++ITSGPV+AM+WEG+GV+ + R +IGAT P  + PGTIRGDLA+  GRN+IHGSD  ++AQ EI LWF    +N W  S   W  E
Sbjct:   18 GLVGEILGRFERKGFKLVGLKQVTPSRDLAGEHYGVHRERPFFAGLVDFITSGPVIAMVWEGDGVIASARKLIGATKPLDAEPGTIRGDLAVNIGRNVIHGSDGPDTAQFEINLWFSAEELNAWTPSDQSWRIE 151          
BLAST of CX299949 vs. ExPASy Swiss-Prot
Match: NDK_PROM3 (Nucleoside diphosphate kinase OS=Prochlorococcus marinus (strain MIT 9303) GN=ndk PE=3 SV=1)

HSP 1 Score: 150.599 bits (379), Expect = 7.270e-36
Identity = 73/134 (54.48%), Postives = 93/134 (69.40%), Query Frame = 2
Query:   17 GLVGEIIIRFEKKGFSLKGLKLMTVDRPFAEKHYEDLSSKPFFGSLIEYITSGPVVAMIWEGEGVVKTGRTIIGATNPAQSAPGTIRGDLAIVTGRNIIHGSDSVESAQKEIALWFPDGPIN-WQSSLHPWIYE 415
            GLVGEI+ RFE+KGF L GLK +   R  A +HY     +PFF  L+++ITSGPVVAM+WEG+GV+ + R +IGAT P ++ PGTIRGDLA+  GRN+IHGSD  ++AQ EI LWF    +N W  S   W  E
Sbjct:   18 GLVGEILGRFERKGFKLVGLKQLAPSRELAGEHYGVHRERPFFAGLVDFITSGPVVAMVWEGDGVIASARKLIGATKPLEAEPGTIRGDLAVNIGRNVIHGSDGPDTAQFEINLWFSPEELNAWTPSDQSWRVE 151          
BLAST of CX299949 vs. ExPASy Swiss-Prot
Match: NDK_PROMA (Nucleoside diphosphate kinase OS=Prochlorococcus marinus GN=ndk PE=3 SV=2)

HSP 1 Score: 150.214 bits (378), Expect = 9.495e-36
Identity = 74/134 (55.22%), Postives = 91/134 (67.91%), Query Frame = 2
Query:   17 GLVGEIIIRFEKKGFSLKGLKLMTVDRPFAEKHYEDLSSKPFFGSLIEYITSGPVVAMIWEGEGVVKTGRTIIGATNPAQSAPGTIRGDLAIVTGRNIIHGSDSVESAQKEIALWFPDGPI-NWQSSLHPWIYE 415
            GLVGEI+ RFE+KGF L GLK +   +  AEKHY     +PFF  L+ +ITSGPVVAM+WEG+GV+ + R +IGAT P ++ PGTIRGDL I  GRN+IHGSD  E+A  EI LWF    + NW  S   W  E
Sbjct:   18 GLVGEILGRFERKGFKLVGLKQLIPSKELAEKHYGVHKERPFFTGLVGFITSGPVVAMVWEGDGVILSARKLIGATKPLEAEPGTIRGDLGINIGRNVIHGSDGPETASFEIDLWFNSSELNNWNPSDQKWRVE 151          
BLAST of CX299949 vs. ExPASy Swiss-Prot
Match: NDK_STACT (Nucleoside diphosphate kinase OS=Staphylococcus carnosus (strain TM300) GN=ndk PE=3 SV=1)

HSP 1 Score: 149.828 bits (377), Expect = 1.240e-35
Identity = 73/133 (54.89%), Postives = 95/133 (71.43%), Query Frame = 2
Query:   20 LVGEIIIRFEKKGFSLKGLKLMTVDRPFAEKHYEDLSSKPFFGSLIEYITSGPVVAMIWEGEGVVKTGRTIIGATNPAQSAPGTIRGDLAIVTGRNIIHGSDSVESAQKEIALWFPDGPIN-WQSSLHPWIYE 415
            LVGEII R EKKG  L G K MTV +  AE HY + + KPF+  L+ +ITS PV AM+ EGE VV+  R +IG TNP ++APGTIRGDL +  GRN+IHGSDSVESA++EI+LWF    ++ + ++   W+YE
Sbjct:   17 LVGEIITRLEKKGLKLVGGKFMTVSKEKAETHYGEHADKPFYEGLVSFITSAPVFAMVVEGENVVEVTRNMIGKTNPTEAAPGTIRGDLGLTVGRNVIHGSDSVESAKREISLWFEPNELSVYTANDEEWLYE 149          
The following BLAST results are available for this feature:
BLAST of CX299949 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
NDK_OCEIH2.499e-3653.03Nucleoside diphosphate kinase OS=Oceanobacillus ih... [more]
NDK_DESRM2.499e-3652.99Nucleoside diphosphate kinase OS=Desulfotomaculum ... [more]
NDK_BACHD2.499e-3653.44Nucleoside diphosphate kinase OS=Bacillus halodura... [more]
NDK3_MOUSE2.499e-3652.63Nucleoside diphosphate kinase 3 OS=Mus musculus GN... [more]
NDK_PROM14.262e-3653.73Nucleoside diphosphate kinase OS=Prochlorococcus m... [more]
NDK_PROMT5.567e-3652.99Nucleoside diphosphate kinase OS=Prochlorococcus m... [more]
NDK_PROMM7.270e-3654.48Nucleoside diphosphate kinase OS=Prochlorococcus m... [more]
NDK_PROM37.270e-3654.48Nucleoside diphosphate kinase OS=Prochlorococcus m... [more]
NDK_PROMA9.495e-3655.22Nucleoside diphosphate kinase OS=Prochlorococcus m... [more]
NDK_STACT1.240e-3554.89Nucleoside diphosphate kinase OS=Staphylococcus ca... [more]

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Properties
Property NameValue
Genbank descriptionC07004D02SK SaltLeaf1 Citrus clementina cDNA clone C07004D02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX299949 ID=CX299949; Name=CX299949; organism=Citrus clementina; type=EST; length=686bp
AATTCGGCACGAGGGAGGCCTTGTTGGTGAAATCATCATCAGATTTGAGA
AGAAGGGTTTCTCCTTGAAGGGTTTGAAGCTTATGACTGTGGACCGCCCT
TTTGCTGAGAAGCACTATGAGGATTTGTCATCGAAGCCTTTCTTTGGTTC
TCTGATTGAGTACATTACCTCTGGTCCTGTTGTTGCTATGATTTGGGAGG
GTGAAGGTGTTGTTAAGACTGGCCGCACTATTATTGGAGCCACCAACCCT
GCGCAGTCTGCTCCTGGAACCATCCGTGGTGATTTGGCTATCGTGACGGG
CAGGAATATCATCCATGGAAGTGACTCAGTTGAGAGTGCCCAGAAAGAAA
TCGCCTTGTGGTTCCCTGATGGCCCTATTAACTGGCAGAGCAGCCTTCAC
CCTTGGATCTATGAGTAAACTAATGTTTGGTTGAGGAGCCTAATTGTTCC
TGCAGTTAGACTTATCCCTATCCCTATCCCTATTTCCTTATTTATGGTTA
CTCCTTGTTGGTGAACTGTTATGAAGTATTGAGTTAAATTGAGACCAATC
CTGGTTATGTTGGCTGCTTTCATTCTTGTGGTTGCCATATACAATATTTA
AGCTTTTTTGTTGACTGTATTATGAATTGAGTTTGTTAATGGTTAGCACA
TGATGGTTGCACTTTTTAAAAAAAAAAAAAAAAAAA
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