CX299955

Overview
NameCX299955
Unique NameCX299955
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length660
Libraries
Library NameType
SaltLeaf1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of CX299955 vs. ExPASy Swiss-Prot
Match: SCP29_ARATH (Serine carboxypeptidase-like 29 OS=Arabidopsis thaliana GN=SCPL29 PE=2 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 7.531e-11
Identity = 31/88 (35.23%), Postives = 51/88 (57.95%), Query Frame = 1 
Query:  223 GYRSLIYSGDHDMIIPFLGTEAWIKSLNYSIVDDWRPWILHSQVAGYTRTYSNQMTYATVKGGGHTAPEYRPAECYAMFQRWINHDPL 486
            G R  ++SGD D ++P   T   I +LN   +  + PW L  QV G+++ Y+  + + TV+G GH  P +RP +  A+F+ +I+  PL
Sbjct:  375 GLRIWVFSGDADAVVPVTSTRYSIDALNLRPLSAYGPWYLDGQVGGWSQQYAG-LNFVTVRGAGHEVPLHRPKQALALFKAFISGTPL 461
[Close]
BLAST of CX299955 vs. ExPASy Swiss-Prot
Match: CBP21_HORVU (Serine carboxypeptidase II-1 (Fragment) OS=Hordeum vulgare GN=CXP;2-1 PE=1 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 7.531e-11
Identity = 31/94 (32.98%), Postives = 50/94 (53.19%), Query Frame = 1 
Query:  223 GYRSLIYSGDHDMIIPFLGTEAWIKSLNYSIVDDWRPWILHSQVAGYTRTYSNQMTYATVKGGGHTAPEYRPAECYAMFQRWINHDPL*LPAIS 504
            G R  ++SGD D ++P   T   I +L    V +W PW    +VAG+ + Y   +T  T++G GH  P +RP +   +F+ ++   P+  PA S
Sbjct:  228 GIRIWVFSGDADSVVPLTATRYSIDALYLPTVTNWYPWYDEEEVAGWCQVYKG-LTLVTIRGAGHEVPLHRPQQALKLFEHFLQDKPMPRPAHS 320
The following BLAST results are available for this feature:
BLAST of CX299955 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 42
Match NameE-valueIdentityDescription
SCP29_ARATH7.531e-1135.23Serine carboxypeptidase-like 29 OS=Arabidopsis tha... [more]
CBP21_HORVU7.531e-1132.98Serine carboxypeptidase II-1 (Fragment) OS=Hordeum... [more]

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Properties
Property NameValue
Genbank descriptionC07004D08SK SaltLeaf1 Citrus clementina cDNA clone C07004D08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX299955 ID=CX299955; Name=CX299955; organism=Citrus clementina; type=EST; length=660bp
AGCAATCTCAAGAATTCCTTAATCCTGAACAACATTTCCTCCGATTGGCT
GTCGATCTTATGGATATTTGCTCGCTCGCTATTGGGATAATGACCATAAT
GTCCGTAAGGCACTTCATATAAGACAGGGAAGCAAAGGTGAATGGATACG
CTGCAATTATGATTTACCTTATACGCATGAAATTGGCAATAGTTTTTCCT
ATCATGTAAGCCTCAGTACAAAGGCTACCGCTCTTTAATATATAGTGGGG
ACCATGACATGATCATACCATTCCTGGGAACAGAGGCGTGGATAAAATCT
CTCAATTACTCCATTGTTGATGACTGGAGGCCGTGGATTCTCCACAGCCA
AGTTGCAGGGTATACGAGGACTTACTCCAATCAGATGACGTATGCCACTG
TAAAGGGAGGAGGGCACACTGCTCCTGAGTACAGGCCTGCGGAATGTTAT
GCTATGTTTCAAAGATGGATAAATCATGATCCATTGTAGTTGCCTGCAAT
TTCTAGCTAGTATTTGGTCCAAAGTAATCTATATCAATAATTGATCATGT
ATGATCATGTTTCCTCATGTTAGGTATCAGTGTTGACAATAAACAGACAT
TCATGAAAAGCACACATTCATAATAAATGGAAGCTAATTTTACCAAAAAA
AAAAAAAAAA
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