CX299958

Overview
NameCX299958
Unique NameCX299958
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length540
Libraries
Library NameType
SaltLeaf1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of CX299958 vs. ExPASy Swiss-Prot
Match: CHIC_SECCE (Basic endochitinase C OS=Secale cereale GN=rscc PE=1 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 1.806e-13
Identity = 35/52 (67.31%), Postives = 40/52 (76.92%), Query Frame = -3 
Query:  383 GKFYYGRGPIQLTGNGNYIDAGRAIGFDGLNSPETVARDRVISFKTALWYWM 538
            GK YYGRGPIQL+ N NY  AGRAIG D L +P+ VA D  +SFKTALW+WM
Sbjct:  131 GKRYYGRGPIQLSHNYNYGPAGRAIGVDLLRNPDLVATDPTVSFKTALWFWM 182
[Close]
BLAST of CX299958 vs. ExPASy Swiss-Prot
Match: CHIA_SECCE (Basic endochitinase A OS=Secale cereale GN=rsca PE=1 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 2.358e-13
Identity = 34/52 (65.38%), Postives = 40/52 (76.92%), Query Frame = -3 
Query:  383 GKFYYGRGPIQLTGNGNYIDAGRAIGFDGLNSPETVARDRVISFKTALWYWM 538
            GK YYGRGPIQL+ N NY  AGRAIG D L +P+ VA D  +SFKTA+W+WM
Sbjct:  186 GKSYYGRGPIQLSHNYNYGPAGRAIGVDLLRNPDLVATDPTVSFKTAMWFWM 237
[Close]
BLAST of CX299958 vs. ExPASy Swiss-Prot
Match: CHI3_ORYSJ (Chitinase 3 OS=Oryza sativa subsp. japonica GN=Cht3 PE=2 SV=2)

HSP 1 Score: 75.0998 bits (183), Expect = 2.358e-13
Identity = 34/52 (65.38%), Postives = 40/52 (76.92%), Query Frame = -3 
Query:  383 GKFYYGRGPIQLTGNGNYIDAGRAIGFDGLNSPETVARDRVISFKTALWYWM 538
            GK YYGRGPIQ+T N NY  AG+AIG D LN+P+ VA D  +SFKTA W+WM
Sbjct:  183 GKKYYGRGPIQITYNYNYGPAGQAIGSDLLNNPDLVASDATVSFKTAFWFWM 234
[Close]
BLAST of CX299958 vs. ExPASy Swiss-Prot
Match: CHI1_HORVU (26 kDa endochitinase 1 OS=Hordeum vulgare PE=2 SV=4)

HSP 1 Score: 75.0998 bits (183), Expect = 2.358e-13
Identity = 34/52 (65.38%), Postives = 40/52 (76.92%), Query Frame = -3 
Query:  383 GKFYYGRGPIQLTGNGNYIDAGRAIGFDGLNSPETVARDRVISFKTALWYWM 538
            GK YYGRGPIQL+ N NY  AGRAIG D L +P+ VA D  +SFKTA+W+WM
Sbjct:  183 GKSYYGRGPIQLSHNYNYGPAGRAIGVDLLRNPDLVATDPTVSFKTAMWFWM 234
[Close]
BLAST of CX299958 vs. ExPASy Swiss-Prot
Match: CHIT_SOLTU (Endochitinase OS=Solanum tuberosum PE=2 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 3.080e-13
Identity = 34/52 (65.38%), Postives = 41/52 (78.85%), Query Frame = -3 
Query:  383 GKFYYGRGPIQLTGNGNYIDAGRAIGFDGLNSPETVARDRVISFKTALWYWM 538
            G+ Y+GRGPIQ++ N NY   GRAIG D LN+P+ VA D VISFKTALW+WM
Sbjct:  185 GRKYFGRGPIQISHNYNYGPCGRAIGVDLLNNPDLVATDPVISFKTALWFWM 236
[Close]
BLAST of CX299958 vs. ExPASy Swiss-Prot
Match: CHIT_PHAVU (Endochitinase OS=Phaseolus vulgaris PE=1 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 3.080e-13
Identity = 34/52 (65.38%), Postives = 40/52 (76.92%), Query Frame = -3 
Query:  383 GKFYYGRGPIQLTGNGNYIDAGRAIGFDGLNSPETVARDRVISFKTALWYWM 538
            G+ YYGRGPIQ++ N NY   GRAIG D LN P+ VA D VISFK+ALW+WM
Sbjct:  181 GQQYYGRGPIQISWNYNYGQCGRAIGVDLLNKPDLVATDSVISFKSALWFWM 232
[Close]
BLAST of CX299958 vs. ExPASy Swiss-Prot
Match: CHI5_PHAVU (Endochitinase CH5B OS=Phaseolus vulgaris PE=3 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 3.080e-13
Identity = 34/52 (65.38%), Postives = 40/52 (76.92%), Query Frame = -3 
Query:  383 GKFYYGRGPIQLTGNGNYIDAGRAIGFDGLNSPETVARDRVISFKTALWYWM 538
            G+ YYGRGPIQ++ N NY   GRAIG D LN P+ VA D VISFK+ALW+WM
Sbjct:  180 GQQYYGRGPIQISWNYNYGQCGRAIGVDLLNKPDLVATDSVISFKSALWFWM 231
[Close]
BLAST of CX299958 vs. ExPASy Swiss-Prot
Match: CHI2_ORYSJ (Chitinase 2 OS=Oryza sativa subsp. japonica GN=Cht2 PE=1 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 3.080e-13
Identity = 34/52 (65.38%), Postives = 41/52 (78.85%), Query Frame = -3 
Query:  383 GKFYYGRGPIQLTGNGNYIDAGRAIGFDGLNSPETVARDRVISFKTALWYWM 538
            G+ YYGRGPIQL+ N NY  AGRAIG D L++P+ VA D  +SFKTALW+WM
Sbjct:  195 GRKYYGRGPIQLSFNFNYGPAGRAIGVDLLSNPDLVATDATVSFKTALWFWM 246
[Close]
BLAST of CX299958 vs. ExPASy Swiss-Prot
Match: CHIB_VITVI (Basic endochitinase OS=Vitis vinifera GN=CHIT1B PE=2 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 4.023e-13
Identity = 33/52 (63.46%), Postives = 41/52 (78.85%), Query Frame = -3 
Query:  383 GKFYYGRGPIQLTGNGNYIDAGRAIGFDGLNSPETVARDRVISFKTALWYWM 538
            G+ YYGRGPIQ++ N NY  AG+AIG D +N+P+ VA D VISFKTA W+WM
Sbjct:  171 GRKYYGRGPIQISYNYNYGQAGKAIGVDLVNNPDLVATDAVISFKTAFWFWM 222
[Close]
BLAST of CX299958 vs. ExPASy Swiss-Prot
Match: CHI9_ORYSJ (Chitinase 9 OS=Oryza sativa subsp. japonica GN=Cht9 PE=2 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 6.862e-13
Identity = 35/51 (68.63%), Postives = 40/51 (78.43%), Query Frame = -3 
Query:  383 KFYYGRGPIQLTGNGNYIDAGRAIGFDGLNSPETVARDRVISFKTALWYWM 535
            K Y+GRGPIQL+ N NY  AG AIG D LN+PE VA D V+SFKTALW+WM
Sbjct:  193 KKYFGRGPIQLSYNYNYGPAGEAIGEDLLNNPELVASDPVVSFKTALWFWM 243
The following BLAST results are available for this feature:
BLAST of CX299958 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 46
Match NameE-valueIdentityDescription
CHIC_SECCE1.806e-1367.31Basic endochitinase C OS=Secale cereale GN=rscc PE... [more]
CHIA_SECCE2.358e-1365.38Basic endochitinase A OS=Secale cereale GN=rsca PE... [more]
CHI3_ORYSJ2.358e-1365.38Chitinase 3 OS=Oryza sativa subsp. japonica GN=Cht... [more]
CHI1_HORVU2.358e-1365.3826 kDa endochitinase 1 OS=Hordeum vulgare PE=2 SV=... [more]
CHIT_SOLTU3.080e-1365.38Endochitinase OS=Solanum tuberosum PE=2 SV=1[more]
CHIT_PHAVU3.080e-1365.38Endochitinase OS=Phaseolus vulgaris PE=1 SV=1[more]
CHI5_PHAVU3.080e-1365.38Endochitinase CH5B OS=Phaseolus vulgaris PE=3 SV=1[more]
CHI2_ORYSJ3.080e-1365.38Chitinase 2 OS=Oryza sativa subsp. japonica GN=Cht... [more]
CHIB_VITVI4.023e-1363.46Basic endochitinase OS=Vitis vinifera GN=CHIT1B PE... [more]
CHI9_ORYSJ6.862e-1368.63Chitinase 9 OS=Oryza sativa subsp. japonica GN=Cht... [more]

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Properties
Property NameValue
Genbank descriptionC07004D11SK SaltLeaf1 Citrus clementina cDNA clone C07004D11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX299958 ID=CX299958; Name=CX299958; organism=Citrus clementina; type=EST; length=540bp
AGAGAGAACTAGTCTCGAGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT
TTACTGCAAATCATCCATTAATTTTCTCTTTATTTTATGATCAGGTACAC
AAAAATTATTCCATCAGAGTTACCAAACAAAGAAAGTTGTTTGGAATAAC
TCTGGCTTACTGGGATATAATATAATACACATAGTGTAACATTTTCATAC
CAAATATCTAATCAGCACTCGAGATTTGGTCTGGGATTGTTACCCCATGT
GTTTTATTTTTTATCGCGGGGGGCCGGGGTTTTTCCAACCCCCTTTCTTT
GTTGGGTCGCCCGGTTGGGATGATTTTTGATTTTCCGAATTGTTTCACCG
AGACCTTGGTTTAGTGCTGAGTGCACGTATCTCATCCAATACCACAAAGC
AGTCTTGAAAGATATGACACGGTCCCTGGCCACCGTTTCCGGAGAGTTCA
GACCGTCGAAACCGATGGCCCTTCCGGCATCTATGTAGTTTCCGTTTCCG
GTGAGCTGAATCGGTCCCCGGCCATAGTAGAATTTACCAT
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