CX299958

Overview
NameCX299958
Unique NameCX299958
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length540
Libraries
Library NameType
SaltLeaf1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of CX299958 vs. ExPASy Swiss-Prot
Match: CHIB_SOLLC (Acidic 27 kDa endochitinase OS=Solanum lycopersicum GN=CHI17 PE=1 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 8.962e-13
Identity = 32/52 (61.54%), Postives = 40/52 (76.92%), Query Frame = -3 
Query:  383 GKFYYGRGPIQLTGNGNYIDAGRAIGFDGLNSPETVARDRVISFKTALWYWM 538
            G  +YGRGPIQLTG  NY  AG+AIG D +N+P+ VA D  +SFKTA+W+WM
Sbjct:  110 GSGFYGRGPIQLTGQSNYDLAGQAIGQDLVNNPDLVATDATVSFKTAIWFWM 161
[Close]
BLAST of CX299958 vs. ExPASy Swiss-Prot
Match: CHI2_TOBAC (Endochitinase B OS=Nicotiana tabacum GN=CHN50 PE=1 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 8.962e-13
Identity = 33/52 (63.46%), Postives = 41/52 (78.85%), Query Frame = -3 
Query:  383 GKFYYGRGPIQLTGNGNYIDAGRAIGFDGLNSPETVARDRVISFKTALWYWM 538
            G+ Y+GRGPIQ++ N NY   GRAIG D LN+P+ VA D VISFK+ALW+WM
Sbjct:  181 GRKYFGRGPIQISHNYNYGPCGRAIGVDLLNNPDLVATDPVISFKSALWFWM 232
[Close]
BLAST of CX299958 vs. ExPASy Swiss-Prot
Match: CHI1_TOBAC (Endochitinase A OS=Nicotiana tabacum GN=CHN48 PE=1 SV=2)

HSP 1 Score: 73.1738 bits (178), Expect = 8.962e-13
Identity = 33/52 (63.46%), Postives = 41/52 (78.85%), Query Frame = -3 
Query:  383 GKFYYGRGPIQLTGNGNYIDAGRAIGFDGLNSPETVARDRVISFKTALWYWM 538
            G+ Y+GRGPIQ++ N NY   GRAIG D LN+P+ VA D VISFK+ALW+WM
Sbjct:  186 GRKYFGRGPIQISHNYNYGPCGRAIGVDLLNNPDLVATDPVISFKSALWFWM 237
[Close]
BLAST of CX299958 vs. ExPASy Swiss-Prot
Match: CHID_SOLLC (Basic endochitinase (Fragment) OS=Solanum lycopersicum GN=CHI14 PE=2 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 1.170e-12
Identity = 33/52 (63.46%), Postives = 41/52 (78.85%), Query Frame = -3 
Query:  383 GKFYYGRGPIQLTGNGNYIDAGRAIGFDGLNSPETVARDRVISFKTALWYWM 538
            GK Y+GRGPIQ++ N NY  AG AIG + LN+P+ VA D V+SFKTALW+WM
Sbjct:  111 GKKYFGRGPIQISYNYNYGAAGSAIGVNLLNNPDLVANDAVVSFKTALWFWM 162
[Close]
BLAST of CX299958 vs. ExPASy Swiss-Prot
Match: CHIB_ARATH (Basic endochitinase B OS=Arabidopsis thaliana GN=CHI-B PE=1 SV=3)

HSP 1 Score: 72.7886 bits (177), Expect = 1.170e-12
Identity = 33/52 (63.46%), Postives = 40/52 (76.92%), Query Frame = -3 
Query:  383 GKFYYGRGPIQLTGNGNYIDAGRAIGFDGLNSPETVARDRVISFKTALWYWM 538
            GK YYGRGP+QL+ N NY   GRAIG D LN+P+ VA D VI+FK A+W+WM
Sbjct:  192 GKRYYGRGPMQLSWNYNYGLCGRAIGVDLLNNPDLVANDAVIAFKAAIWFWM 243
[Close]
BLAST of CX299958 vs. ExPASy Swiss-Prot
Match: CHI3_SOLTU (Endochitinase 3 (Fragment) OS=Solanum tuberosum GN=CHTB3 PE=2 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 1.170e-12
Identity = 32/52 (61.54%), Postives = 41/52 (78.85%), Query Frame = -3 
Query:  383 GKFYYGRGPIQLTGNGNYIDAGRAIGFDGLNSPETVARDRVISFKTALWYWM 538
            G+ Y+GRGPIQ++ N NY   GRAIG D LN+P+ VA D VISFK+A+W+WM
Sbjct:  175 GRKYFGRGPIQISHNYNYGPCGRAIGVDLLNNPDLVATDSVISFKSAIWFWM 226
[Close]
BLAST of CX299958 vs. ExPASy Swiss-Prot
Match: CHI2_HORVU (26 kDa endochitinase 2 OS=Hordeum vulgare PE=1 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 1.170e-12
Identity = 33/52 (63.46%), Postives = 39/52 (75.00%), Query Frame = -3 
Query:  383 GKFYYGRGPIQLTGNGNYIDAGRAIGFDGLNSPETVARDRVISFKTALWYWM 538
            GK YYGRGPIQL+ N NY  AGRAIG D L +P+ VA D  + FKTA+W+WM
Sbjct:  131 GKRYYGRGPIQLSHNYNYGPAGRAIGVDLLANPDLVATDATVGFKTAIWFWM 182
[Close]
BLAST of CX299958 vs. ExPASy Swiss-Prot
Match: CHI2_BRANA (Endochitinase CH25 OS=Brassica napus PE=2 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 1.170e-12
Identity = 32/52 (61.54%), Postives = 40/52 (76.92%), Query Frame = -3 
Query:  383 GKFYYGRGPIQLTGNGNYIDAGRAIGFDGLNSPETVARDRVISFKTALWYWM 538
            GK YYGRGP+QL+ N NY   GRAIG D LN+P+ V+ D VI+FK A+W+WM
Sbjct:  177 GKSYYGRGPMQLSWNYNYGQCGRAIGSDLLNNPDLVSNDPVIAFKAAIWFWM 228
[Close]
BLAST of CX299958 vs. ExPASy Swiss-Prot
Match: CHI1_SOLTU (Endochitinase 1 (Fragment) OS=Solanum tuberosum GN=CHTB1 PE=2 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 1.170e-12
Identity = 32/52 (61.54%), Postives = 41/52 (78.85%), Query Frame = -3 
Query:  383 GKFYYGRGPIQLTGNGNYIDAGRAIGFDGLNSPETVARDRVISFKTALWYWM 538
            G+ Y+GRGPIQ++ N NY   GRAIG D LN+P+ VA D VISFK+A+W+WM
Sbjct:  175 GRKYFGRGPIQISHNYNYGPCGRAIGVDLLNNPDLVATDSVISFKSAIWFWM 226
[Close]
BLAST of CX299958 vs. ExPASy Swiss-Prot
Match: CHIC_SOLLC (Basic 30 kDa endochitinase OS=Solanum lycopersicum GN=CHI9 PE=1 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 1.529e-12
Identity = 32/52 (61.54%), Postives = 41/52 (78.85%), Query Frame = -3 
Query:  383 GKFYYGRGPIQLTGNGNYIDAGRAIGFDGLNSPETVARDRVISFKTALWYWM 538
            G+ Y+GRGPIQ++ N NY   GRAIG D LN+P+ VA D VISFK+A+W+WM
Sbjct:  179 GRKYFGRGPIQISHNYNYGPCGRAIGVDLLNNPDLVATDPVISFKSAIWFWM 230
The following BLAST results are available for this feature:
BLAST of CX299958 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 46
Match NameE-valueIdentityDescription
CHIB_SOLLC8.962e-1361.54Acidic 27 kDa endochitinase OS=Solanum lycopersicu... [more]
CHI2_TOBAC8.962e-1363.46Endochitinase B OS=Nicotiana tabacum GN=CHN50 PE=1... [more]
CHI1_TOBAC8.962e-1363.46Endochitinase A OS=Nicotiana tabacum GN=CHN48 PE=1... [more]
CHID_SOLLC1.170e-1263.46Basic endochitinase (Fragment) OS=Solanum lycopers... [more]
CHIB_ARATH1.170e-1263.46Basic endochitinase B OS=Arabidopsis thaliana GN=C... [more]
CHI3_SOLTU1.170e-1261.54Endochitinase 3 (Fragment) OS=Solanum tuberosum GN... [more]
CHI2_HORVU1.170e-1263.4626 kDa endochitinase 2 OS=Hordeum vulgare PE=1 SV=... [more]
CHI2_BRANA1.170e-1261.54Endochitinase CH25 OS=Brassica napus PE=2 SV=1[more]
CHI1_SOLTU1.170e-1261.54Endochitinase 1 (Fragment) OS=Solanum tuberosum GN... [more]
CHIC_SOLLC1.529e-1261.54Basic 30 kDa endochitinase OS=Solanum lycopersicum... [more]

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Properties
Property NameValue
Genbank descriptionC07004D11SK SaltLeaf1 Citrus clementina cDNA clone C07004D11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX299958 ID=CX299958; Name=CX299958; organism=Citrus clementina; type=EST; length=540bp
AGAGAGAACTAGTCTCGAGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT
TTACTGCAAATCATCCATTAATTTTCTCTTTATTTTATGATCAGGTACAC
AAAAATTATTCCATCAGAGTTACCAAACAAAGAAAGTTGTTTGGAATAAC
TCTGGCTTACTGGGATATAATATAATACACATAGTGTAACATTTTCATAC
CAAATATCTAATCAGCACTCGAGATTTGGTCTGGGATTGTTACCCCATGT
GTTTTATTTTTTATCGCGGGGGGCCGGGGTTTTTCCAACCCCCTTTCTTT
GTTGGGTCGCCCGGTTGGGATGATTTTTGATTTTCCGAATTGTTTCACCG
AGACCTTGGTTTAGTGCTGAGTGCACGTATCTCATCCAATACCACAAAGC
AGTCTTGAAAGATATGACACGGTCCCTGGCCACCGTTTCCGGAGAGTTCA
GACCGTCGAAACCGATGGCCCTTCCGGCATCTATGTAGTTTCCGTTTCCG
GTGAGCTGAATCGGTCCCCGGCCATAGTAGAATTTACCAT
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