CX299965

Overview
NameCX299965
Unique NameCX299965
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length679
Libraries
Library NameType
SaltLeaf1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX299965 vs. ExPASy Swiss-Prot
Match: CLPX_DESHY (ATP-dependent Clp protease ATP-binding subunit clpX OS=Desulfitobacterium hafniense (strain Y51) GN=clpX PE=3 SV=1)

HSP 1 Score: 118.242 bits (295), Expect = 3.929e-26
Identity = 55/95 (57.89%), Postives = 75/95 (78.95%), Query Frame = 1
Query:   52 DLIAYGLIPEFVGRFPILVSLTALTEDQLVKVLTEPKNALGKQYKRLFSMNNVKLHFTEKALRVIAKKATAKNTGARGLRAILESILTEAMYEIP 336
            DL+ +GLIPEFVGR P++V L AL E+ LV++LTEPKNAL KQY++L  ++ V L F E+AL+ IA++A  +NTGARGLRAI+E I+   MY++P
Sbjct:  289 DLLKFGLIPEFVGRLPVMVKLDALDEEALVRILTEPKNALVKQYEKLLELDGVALEFKEEALKAIAEEAIRRNTGARGLRAIVEEIMQNVMYDLP 383          
BLAST of CX299965 vs. ExPASy Swiss-Prot
Match: CLPX_DESHD (ATP-dependent Clp protease ATP-binding subunit clpX OS=Desulfitobacterium hafniense (strain DCB-2 / DSM 10664) GN=clpX PE=3 SV=1)

HSP 1 Score: 118.242 bits (295), Expect = 3.929e-26
Identity = 55/95 (57.89%), Postives = 75/95 (78.95%), Query Frame = 1
Query:   52 DLIAYGLIPEFVGRFPILVSLTALTEDQLVKVLTEPKNALGKQYKRLFSMNNVKLHFTEKALRVIAKKATAKNTGARGLRAILESILTEAMYEIP 336
            DL+ +GLIPEFVGR P++V L AL E+ LV++LTEPKNAL KQY++L  ++ V L F E+AL+ IA++A  +NTGARGLRAI+E I+   MY++P
Sbjct:  289 DLLKFGLIPEFVGRLPVMVKLDALDEEALVRILTEPKNALVKQYEKLLELDGVALEFKEEALKAIAEEAIRRNTGARGLRAIVEEIMQNVMYDLP 383          
BLAST of CX299965 vs. ExPASy Swiss-Prot
Match: CLPX_BRUO2 (ATP-dependent Clp protease ATP-binding subunit clpX OS=Brucella ovis (strain ATCC 25840 / 63/290 / NCTC 10512) GN=clpX PE=3 SV=1)

HSP 1 Score: 118.242 bits (295), Expect = 3.929e-26
Identity = 57/98 (58.16%), Postives = 75/98 (76.53%), Query Frame = 1
Query:   52 DLIAYGLIPEFVGRFPILVSLTALTEDQLVKVLTEPKNALGKQYKRLFSMNNVKLHFTEKALRVIAKKATAKNTGARGLRAILESILTEAMYEIPDVK 345
            DL+ +GLIPEFVGR P++ +L  L  D LV++LTEPKNAL KQY+RLF M NV+L F + ALR IA KA  + TGARGLR+I+E IL + M+E+P ++
Sbjct:  293 DLLKFGLIPEFVGRLPVIATLEDLDVDALVQILTEPKNALVKQYQRLFDMENVELVFHDDALRAIANKAVERKTGARGLRSIMEKILLDTMFELPTLE 390          
BLAST of CX299965 vs. ExPASy Swiss-Prot
Match: CLPX_BRUME (ATP-dependent Clp protease ATP-binding subunit clpX OS=Brucella melitensis GN=clpX PE=3 SV=1)

HSP 1 Score: 118.242 bits (295), Expect = 3.929e-26
Identity = 57/98 (58.16%), Postives = 75/98 (76.53%), Query Frame = 1
Query:   52 DLIAYGLIPEFVGRFPILVSLTALTEDQLVKVLTEPKNALGKQYKRLFSMNNVKLHFTEKALRVIAKKATAKNTGARGLRAILESILTEAMYEIPDVK 345
            DL+ +GLIPEFVGR P++ +L  L  D LV++LTEPKNAL KQY+RLF M NV+L F + ALR IA KA  + TGARGLR+I+E IL + M+E+P ++
Sbjct:  293 DLLKFGLIPEFVGRLPVIATLEDLDVDALVQILTEPKNALVKQYQRLFDMENVELVFHDDALRAIANKAVERKTGARGLRSIMEKILLDTMFELPTLE 390          
BLAST of CX299965 vs. ExPASy Swiss-Prot
Match: CLPX_BRUMB (ATP-dependent Clp protease ATP-binding subunit clpX OS=Brucella melitensis biotype 2 (strain ATCC 23457) GN=clpX PE=3 SV=1)

HSP 1 Score: 118.242 bits (295), Expect = 3.929e-26
Identity = 57/98 (58.16%), Postives = 75/98 (76.53%), Query Frame = 1
Query:   52 DLIAYGLIPEFVGRFPILVSLTALTEDQLVKVLTEPKNALGKQYKRLFSMNNVKLHFTEKALRVIAKKATAKNTGARGLRAILESILTEAMYEIPDVK 345
            DL+ +GLIPEFVGR P++ +L  L  D LV++LTEPKNAL KQY+RLF M NV+L F + ALR IA KA  + TGARGLR+I+E IL + M+E+P ++
Sbjct:  293 DLLKFGLIPEFVGRLPVIATLEDLDVDALVQILTEPKNALVKQYQRLFDMENVELVFHDDALRAIANKAVERKTGARGLRSIMEKILLDTMFELPTLE 390          
BLAST of CX299965 vs. ExPASy Swiss-Prot
Match: CLPX_BRUAB (ATP-dependent Clp protease ATP-binding subunit clpX OS=Brucella abortus GN=clpX PE=3 SV=2)

HSP 1 Score: 118.242 bits (295), Expect = 3.929e-26
Identity = 57/98 (58.16%), Postives = 75/98 (76.53%), Query Frame = 1
Query:   52 DLIAYGLIPEFVGRFPILVSLTALTEDQLVKVLTEPKNALGKQYKRLFSMNNVKLHFTEKALRVIAKKATAKNTGARGLRAILESILTEAMYEIPDVK 345
            DL+ +GLIPEFVGR P++ +L  L  D LV++LTEPKNAL KQY+RLF M NV+L F + ALR IA KA  + TGARGLR+I+E IL + M+E+P ++
Sbjct:  293 DLLKFGLIPEFVGRLPVIATLEDLDVDALVQILTEPKNALVKQYQRLFDMENVELVFHDDALRAIANKAVERKTGARGLRSIMEKILLDTMFELPTLE 390          
BLAST of CX299965 vs. ExPASy Swiss-Prot
Match: CLPX_BRUA2 (ATP-dependent Clp protease ATP-binding subunit clpX OS=Brucella abortus (strain 2308) GN=clpX PE=3 SV=1)

HSP 1 Score: 118.242 bits (295), Expect = 3.929e-26
Identity = 57/98 (58.16%), Postives = 75/98 (76.53%), Query Frame = 1
Query:   52 DLIAYGLIPEFVGRFPILVSLTALTEDQLVKVLTEPKNALGKQYKRLFSMNNVKLHFTEKALRVIAKKATAKNTGARGLRAILESILTEAMYEIPDVK 345
            DL+ +GLIPEFVGR P++ +L  L  D LV++LTEPKNAL KQY+RLF M NV+L F + ALR IA KA  + TGARGLR+I+E IL + M+E+P ++
Sbjct:  293 DLLKFGLIPEFVGRLPVIATLEDLDVDALVQILTEPKNALVKQYQRLFDMENVELVFHDDALRAIANKAVERKTGARGLRSIMEKILLDTMFELPTLE 390          
BLAST of CX299965 vs. ExPASy Swiss-Prot
Match: CLPX_BRUA1 (ATP-dependent Clp protease ATP-binding subunit clpX OS=Brucella abortus (strain S19) GN=clpX PE=3 SV=1)

HSP 1 Score: 118.242 bits (295), Expect = 3.929e-26
Identity = 57/98 (58.16%), Postives = 75/98 (76.53%), Query Frame = 1
Query:   52 DLIAYGLIPEFVGRFPILVSLTALTEDQLVKVLTEPKNALGKQYKRLFSMNNVKLHFTEKALRVIAKKATAKNTGARGLRAILESILTEAMYEIPDVK 345
            DL+ +GLIPEFVGR P++ +L  L  D LV++LTEPKNAL KQY+RLF M NV+L F + ALR IA KA  + TGARGLR+I+E IL + M+E+P ++
Sbjct:  293 DLLKFGLIPEFVGRLPVIATLEDLDVDALVQILTEPKNALVKQYQRLFDMENVELVFHDDALRAIANKAVERKTGARGLRSIMEKILLDTMFELPTLE 390          
BLAST of CX299965 vs. ExPASy Swiss-Prot
Match: CLPX_AGRT5 (ATP-dependent Clp protease ATP-binding subunit clpX OS=Agrobacterium tumefaciens (strain C58 / ATCC 33970) GN=clpX PE=3 SV=1)

HSP 1 Score: 118.242 bits (295), Expect = 3.929e-26
Identity = 55/98 (56.12%), Postives = 77/98 (78.57%), Query Frame = 1
Query:   52 DLIAYGLIPEFVGRFPILVSLTALTEDQLVKVLTEPKNALGKQYKRLFSMNNVKLHFTEKALRVIAKKATAKNTGARGLRAILESILTEAMYEIPDVK 345
            DL+ +GLIPEF+GR P+L +L  L ED L+++L+EPKNAL KQY+RLF M +V+L F E ALR IA++A  + TGARGLR+I+E IL + M+E+P ++
Sbjct:  294 DLVKFGLIPEFIGRLPVLATLEDLDEDALIQILSEPKNALVKQYQRLFEMEDVELTFHEDALREIARRAITRKTGARGLRSIMEKILLDTMFELPTLE 391          
BLAST of CX299965 vs. ExPASy Swiss-Prot
Match: CLPX_YERPY (ATP-dependent Clp protease ATP-binding subunit clpX OS=Yersinia pseudotuberculosis serotype O:3 (strain YPIII) GN=clpX PE=3 SV=1)

HSP 1 Score: 117.857 bits (294), Expect = 5.132e-26
Identity = 54/97 (55.67%), Postives = 76/97 (78.35%), Query Frame = 1
Query:   52 DLIAYGLIPEFVGRFPILVSLTALTEDQLVKVLTEPKNALGKQYKRLFSMNNVKLHFTEKALRVIAKKATAKNTGARGLRAILESILTEAMYEIPDV 342
            DLI +GLIPEF+GR P++ +L+ L+ED L+++L EPKNAL KQY+ LFS+  V+L F ++AL  IAKKA A+ TGARGLR+I+E  L + MY++P +
Sbjct:  294 DLIKFGLIPEFIGRLPVVATLSELSEDALIQILKEPKNALTKQYQALFSLEGVELEFRDEALTAIAKKAMARKTGARGLRSIVEGALLDTMYDLPSM 390          
The following BLAST results are available for this feature:
BLAST of CX299965 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
CLPX_DESHY3.929e-2657.89ATP-dependent Clp protease ATP-binding subunit clp... [more]
CLPX_DESHD3.929e-2657.89ATP-dependent Clp protease ATP-binding subunit clp... [more]
CLPX_BRUO23.929e-2658.16ATP-dependent Clp protease ATP-binding subunit clp... [more]
CLPX_BRUME3.929e-2658.16ATP-dependent Clp protease ATP-binding subunit clp... [more]
CLPX_BRUMB3.929e-2658.16ATP-dependent Clp protease ATP-binding subunit clp... [more]
CLPX_BRUAB3.929e-2658.16ATP-dependent Clp protease ATP-binding subunit clp... [more]
CLPX_BRUA23.929e-2658.16ATP-dependent Clp protease ATP-binding subunit clp... [more]
CLPX_BRUA13.929e-2658.16ATP-dependent Clp protease ATP-binding subunit clp... [more]
CLPX_AGRT53.929e-2656.12ATP-dependent Clp protease ATP-binding subunit clp... [more]
CLPX_YERPY5.132e-2655.67ATP-dependent Clp protease ATP-binding subunit clp... [more]

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Properties
Property NameValue
Genbank descriptionC07004E07SK SaltLeaf1 Citrus clementina cDNA clone C07004E07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX299965 ID=CX299965; Name=CX299965; organism=Citrus clementina; type=EST; length=679bp
GTAACTGATGCTGCAGTGACATCGTCTTTGCTTGAATCGGTTGAAAGTTC
TGATCTCATTGCATATGGTCTCATACCAGAATTTGTCGGACGATTTCCAA
TATTAGTTAGCTTGACAGCACTAACAGAGGACCAACTTGTTAAGGTCCTC
ACAGAACCAAAAAATGCTCTGGGTAAGCAGTATAAGAGATTGTTCAGCAT
GAACAATGTCAAATTACATTTTACTGAAAAAGCACTAAGAGTAATTGCCA
AAAAAGCTACAGCTAAGAATACTGGTGCCAGAGGTTTAAGAGCCATACTA
GAAAGCATTCTAACTGAAGCCATGTATGAGATTCCTGATGTTAAGACGGG
AAGTGATGGGGTAGATGCTGTTGTGGTAGATGAGGAGTCGGTGGGGTCAG
TGGATGCCCCTGGATGCGGAGGGAAAATTCTACGTGGAGAAGGTGCATTG
GAGCGTTATCTAGTTGAAGCCGAGCGGAAAGAGTCAGCGGAAAATGCATC
TGAGAGGGAGTTGCAGGAGAGTGAAGCAGAGATCTCAACGAGAGCCATGA
GCATGTAGAAGTAGAAGCACCACGATGATTGTTGAAAGTTGTACAACGCA
TGTCTAATGTTATTTGTAGAAATCATATTCATTAGTTGGTGTAATTATAA
TCCCCTTGTATTACAGGTTCTTGAATTCG
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