CX299972

Overview
NameCX299972
Unique NameCX299972
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length531
Libraries
Library NameType
SaltLeaf1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig14565 contig Ccv1_Contig14565:274..804. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX299972 vs. ExPASy Swiss-Prot
Match: GRC14_ORYSJ (Putative glutaredoxin-C14 OS=Oryza sativa subsp. japonica GN=GRXC14 PE=3 SV=2)

HSP 1 Score: 69.3218 bits (168), Expect = 1.262e-11
Identity = 33/55 (60.00%), Postives = 42/55 (76.36%), Query Frame = 2
Query:   14 GRELEQDLQRL-GCSPAVPAVFIGGELVGGANQVMSLHLNRSLIPMLKRVGAIWV 175
            G+E+E+ L +L G  P VP VFIGG+LVGG N++MSLHL   LIPMLK  GA+W+
Sbjct:   49 GKEMERALLKLLGRGPPVPVVFIGGKLVGGTNKIMSLHLGGELIPMLKNAGALWL 103          
BLAST of CX299972 vs. ExPASy Swiss-Prot
Match: GRC13_ARATH (Glutaredoxin-C13 OS=Arabidopsis thaliana GN=GRXC13 PE=2 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 1.648e-11
Identity = 31/46 (67.39%), Postives = 40/46 (86.96%), Query Frame = 2
Query:   17 RELEQDLQRLGCSPAVPAVFIGGELVGGANQVMSLHLNRSLIPMLK 154
            RE+E+ L RLGCS AVPAVF+GG+LVG  N+VMSLHL+ SL+P++K
Sbjct:   50 REIEKALLRLGCSTAVPAVFVGGKLVGSTNEVMSLHLSGSLVPLIK 95          
BLAST of CX299972 vs. ExPASy Swiss-Prot
Match: GRS11_ARATH (Monothiol glutaredoxin-S11 OS=Arabidopsis thaliana GN=GRXS11 PE=2 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 2.811e-11
Identity = 31/48 (64.58%), Postives = 40/48 (83.33%), Query Frame = 2
Query:   11 EGRELEQDLQRLGCSPAVPAVFIGGELVGGANQVMSLHLNRSLIPMLK 154
            E RE+E+ L RLGCS  VPAVFIGG+LVG  N+VMS+HL+ SL+P++K
Sbjct:   48 ECREIEKALMRLGCSKPVPAVFIGGKLVGSTNEVMSMHLSSSLVPLVK 95          
BLAST of CX299972 vs. ExPASy Swiss-Prot
Match: GRXS9_ARATH (Monothiol glutaredoxin-S9 OS=Arabidopsis thaliana GN=GRXS9 PE=2 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 4.795e-11
Identity = 29/48 (60.42%), Postives = 40/48 (83.33%), Query Frame = 2
Query:   11 EGRELEQDLQRLGCSPAVPAVFIGGELVGGANQVMSLHLNRSLIPMLK 154
            E RE+E+ L RLGCS  VPA+F+GG+L+G  N+VMSLHL+ SL+P++K
Sbjct:   48 ECREIEKALMRLGCSTPVPAIFVGGKLIGSTNEVMSLHLSGSLVPLVK 95          
BLAST of CX299972 vs. ExPASy Swiss-Prot
Match: GRC10_ORYSJ (Glutaredoxin-C10 OS=Oryza sativa subsp. japonica GN=GRXC10 PE=3 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 4.795e-11
Identity = 33/59 (55.93%), Postives = 43/59 (72.88%), Query Frame = 2
Query:   14 GRELEQDLQRL-----GCSPAVPAVFIGGELVGGANQVMSLHLNRSLIPMLKRVGAIWV 175
            GR++E++L R      G   A+PAVF+GG LVGGAN+VMSLHL   L+PMLK  GA+W+
Sbjct:   50 GRDMERELARRLNGGGGGGRALPAVFVGGNLVGGANRVMSLHLAGELVPMLKNAGALWL 108          
The following BLAST results are available for this feature:
BLAST of CX299972 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 15
Match NameE-valueIdentityDescription
GRC14_ORYSJ1.262e-1160.00Putative glutaredoxin-C14 OS=Oryza sativa subsp. j... [more]
GRC13_ARATH1.648e-1167.39Glutaredoxin-C13 OS=Arabidopsis thaliana GN=GRXC13... [more]
GRS11_ARATH2.811e-1164.58Monothiol glutaredoxin-S11 OS=Arabidopsis thaliana... [more]
GRXS9_ARATH4.795e-1160.42Monothiol glutaredoxin-S9 OS=Arabidopsis thaliana ... [more]
GRC10_ORYSJ4.795e-1155.93Glutaredoxin-C10 OS=Oryza sativa subsp. japonica G... [more]

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Properties
Property NameValue
Genbank descriptionC07004F02SK SaltLeaf1 Citrus clementina cDNA clone C07004F02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX299972 ID=CX299972; Name=CX299972; organism=Citrus clementina; type=EST; length=531bp
AATTCGGCACGAGGGGCGTGAGCTTGAGCAGGATCTTCAAAGGCTCGGTT
GCAGCCCCGCGGTGCCGGCCGTGTTCATCGGCGGTGAGCTGGTTGGTGGA
GCCAATCAAGTCATGAGTCTTCATCTCAATCGGTCTTTGATCCCAATGCT
TAAAAGGGTTGGAGCAATATGGGTCTGATTAAAACTAATTTTTAATCAGT
TACGAATCTTTTTGCGCATCGGGCACTTTTTAATTATAAATTAATAAACA
TGTGATGTGACTTAGCTAGCTTAGTTGCATAATATGACATATTAAGAGGA
TTATTATATACTATATAGGTGTCGGATGTCTTGGTTTTAGTCCTAATGAA
TCTACTAATCACTATGTATCGCGTGAATGTCGTCTTTTTGGTATCGTAAT
GTTGTGGTTTTGTTTGCTAATAAAGTTGCTGTTTTTTTTCAAAAAAAAAA
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
AAAAAAAAAAACCCTCGGGGGGGGGCCCGGT
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