CX299977

Overview
NameCX299977
Unique NameCX299977
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length527
Libraries
Library NameType
SaltLeaf1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX299977 vs. ExPASy Swiss-Prot
Match: RL31_PROMS (50S ribosomal protein L31 OS=Prochlorococcus marinus (strain AS9601) GN=rpmE PE=3 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 2.676e-14
Identity = 35/65 (53.85%), Postives = 48/65 (73.85%), Query Frame = 2
Query:   86 KKDIHPQFYEDAKVYCNGELVMTTGGTQKEYVVDVWSGNHAFYLGGRSAVVVDADQVEKFRQKFG 280
            K +IHP++Y DAKV CNGE+VMTTG TQ E  VDVWSGNH F+ G +  +  +  +V++F +K+G
Sbjct:    3 KSEIHPKWYPDAKVICNGEVVMTTGSTQPELHVDVWSGNHPFFTGTQKILDTEG-RVDRFMKKYG 66          
BLAST of CX299977 vs. ExPASy Swiss-Prot
Match: RL31_PROM9 (50S ribosomal protein L31 OS=Prochlorococcus marinus (strain MIT 9312) GN=rpmE PE=3 SV=2)

HSP 1 Score: 78.1814 bits (191), Expect = 2.676e-14
Identity = 35/65 (53.85%), Postives = 48/65 (73.85%), Query Frame = 2
Query:   86 KKDIHPQFYEDAKVYCNGELVMTTGGTQKEYVVDVWSGNHAFYLGGRSAVVVDADQVEKFRQKFG 280
            K +IHP++Y DAKV CNGE+VMTTG TQ E  VDVWSGNH F+ G +  +  +  +V++F +K+G
Sbjct:    3 KSEIHPKWYPDAKVICNGEVVMTTGSTQPELHVDVWSGNHPFFTGTQKILDTEG-RVDRFMKKYG 66          
BLAST of CX299977 vs. ExPASy Swiss-Prot
Match: RL31_PROM2 (50S ribosomal protein L31 OS=Prochlorococcus marinus (strain MIT 9215) GN=rpmE PE=3 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 2.676e-14
Identity = 35/65 (53.85%), Postives = 48/65 (73.85%), Query Frame = 2
Query:   86 KKDIHPQFYEDAKVYCNGELVMTTGGTQKEYVVDVWSGNHAFYLGGRSAVVVDADQVEKFRQKFG 280
            K +IHP++Y DAKV CNGE+VMTTG TQ E  VDVWSGNH F+ G +  +  +  +V++F +K+G
Sbjct:    3 KSEIHPKWYPDAKVICNGEVVMTTGSTQPELHVDVWSGNHPFFTGTQKILDTEG-RVDRFMKKYG 66          
BLAST of CX299977 vs. ExPASy Swiss-Prot
Match: RL31_PROM0 (50S ribosomal protein L31 OS=Prochlorococcus marinus (strain MIT 9301) GN=rpmE PE=3 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 2.676e-14
Identity = 35/65 (53.85%), Postives = 48/65 (73.85%), Query Frame = 2
Query:   86 KKDIHPQFYEDAKVYCNGELVMTTGGTQKEYVVDVWSGNHAFYLGGRSAVVVDADQVEKFRQKFG 280
            K +IHP++Y DAKV CNGE+VMTTG TQ E  VDVWSGNH F+ G +  +  +  +V++F +K+G
Sbjct:    3 KSEIHPKWYPDAKVICNGEVVMTTGSTQPELHVDVWSGNHPFFTGTQKILDTEG-RVDRFMKKYG 66          
BLAST of CX299977 vs. ExPASy Swiss-Prot
Match: RL31_TRIEI (50S ribosomal protein L31 OS=Trichodesmium erythraeum (strain IMS101) GN=rpmE PE=3 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 3.495e-14
Identity = 34/64 (53.12%), Postives = 47/64 (73.44%), Query Frame = 2
Query:   86 KKDIHPQFYEDAKVYCNGELVMTTGGTQKEYVVDVWSGNHAFYLGGRSAVVVDADQVEKFRQKF 277
            K DIHP++Y +AKVYCNGE+VMT G TQ E  VDVWSGNH ++ G +  +  +  +VE+F +K+
Sbjct:    3 KADIHPEWYPEAKVYCNGEVVMTVGSTQPEIHVDVWSGNHPYFTGTQKIIDTEG-RVERFMRKY 65          
BLAST of CX299977 vs. ExPASy Swiss-Prot
Match: RL31_PROMT (50S ribosomal protein L31 OS=Prochlorococcus marinus (strain NATL2A) GN=rpmE PE=3 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 3.495e-14
Identity = 35/65 (53.85%), Postives = 47/65 (72.31%), Query Frame = 2
Query:   86 KKDIHPQFYEDAKVYCNGELVMTTGGTQKEYVVDVWSGNHAFYLGGRSAVVVDADQVEKFRQKFG 280
            K DIHP +Y +AKV CNGE+VMTTG TQ E  VDVWSGNH F+ G +  +  +  +V++F +K+G
Sbjct:    3 KSDIHPTWYPEAKVICNGEVVMTTGATQPEIQVDVWSGNHPFFTGTQKILDTEG-RVDRFMRKYG 66          
BLAST of CX299977 vs. ExPASy Swiss-Prot
Match: RL31_SYNPW (50S ribosomal protein L31 OS=Synechococcus sp. (strain WH7803) GN=rpmE PE=3 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 5.961e-14
Identity = 35/65 (53.85%), Postives = 47/65 (72.31%), Query Frame = 2
Query:   86 KKDIHPQFYEDAKVYCNGELVMTTGGTQKEYVVDVWSGNHAFYLGGRSAVVVDADQVEKFRQKFG 280
            K +IHP +Y DAKV CNGE+VMTTG TQ E  VDVWSGNH F+ G +  +  +  +V++F +K+G
Sbjct:    3 KPEIHPTWYPDAKVICNGEVVMTTGSTQPEIHVDVWSGNHPFFTGTQKILDTEG-RVDRFMRKYG 66          
BLAST of CX299977 vs. ExPASy Swiss-Prot
Match: RL31_PROMP (50S ribosomal protein L31 OS=Prochlorococcus marinus subsp. pastoris (strain CCMP1986 / MED4) GN=rpmE PE=3 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 7.785e-14
Identity = 34/65 (52.31%), Postives = 48/65 (73.85%), Query Frame = 2
Query:   86 KKDIHPQFYEDAKVYCNGELVMTTGGTQKEYVVDVWSGNHAFYLGGRSAVVVDADQVEKFRQKFG 280
            K +IHP++Y DAKV CNGE+VMTTG T+ E  VDVWSGNH F+ G +  +  +  +V++F +K+G
Sbjct:    3 KSEIHPKWYPDAKVICNGEVVMTTGSTKPELHVDVWSGNHPFFTGTQKILDTEG-RVDRFMKKYG 66          
BLAST of CX299977 vs. ExPASy Swiss-Prot
Match: RL31_PROM5 (50S ribosomal protein L31 OS=Prochlorococcus marinus (strain MIT 9515) GN=rpmE PE=3 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 7.785e-14
Identity = 34/65 (52.31%), Postives = 48/65 (73.85%), Query Frame = 2
Query:   86 KKDIHPQFYEDAKVYCNGELVMTTGGTQKEYVVDVWSGNHAFYLGGRSAVVVDADQVEKFRQKFG 280
            K +IHP++Y DAKV CNGE+VMTTG T+ E  VDVWSGNH F+ G +  +  +  +V++F +K+G
Sbjct:    3 KSEIHPKWYPDAKVICNGEVVMTTGSTKPELHVDVWSGNHPFFTGTQKILDTEG-RVDRFMKKYG 66          
BLAST of CX299977 vs. ExPASy Swiss-Prot
Match: RL31_SYNR3 (50S ribosomal protein L31 OS=Synechococcus sp. (strain RCC307) GN=rpmE PE=3 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 1.017e-13
Identity = 35/65 (53.85%), Postives = 46/65 (70.77%), Query Frame = 2
Query:   86 KKDIHPQFYEDAKVYCNGELVMTTGGTQKEYVVDVWSGNHAFYLGGRSAVVVDADQVEKFRQKFG 280
            K DIHP +Y DAKV CNGE+VMTTG T  E  VDVWSGNH F+ G +  +  +  +V++F +K+G
Sbjct:    3 KPDIHPTWYPDAKVICNGEVVMTTGSTTPELHVDVWSGNHPFFTGTQKILDTEG-RVDRFMRKYG 66          
The following BLAST results are available for this feature:
BLAST of CX299977 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 41
Match NameE-valueIdentityDescription
RL31_PROMS2.676e-1453.8550S ribosomal protein L31 OS=Prochlorococcus marin... [more]
RL31_PROM92.676e-1453.8550S ribosomal protein L31 OS=Prochlorococcus marin... [more]
RL31_PROM22.676e-1453.8550S ribosomal protein L31 OS=Prochlorococcus marin... [more]
RL31_PROM02.676e-1453.8550S ribosomal protein L31 OS=Prochlorococcus marin... [more]
RL31_TRIEI3.495e-1453.1350S ribosomal protein L31 OS=Trichodesmium erythra... [more]
RL31_PROMT3.495e-1453.8550S ribosomal protein L31 OS=Prochlorococcus marin... [more]
RL31_SYNPW5.961e-1453.8550S ribosomal protein L31 OS=Synechococcus sp. (st... [more]
RL31_PROMP7.785e-1452.3150S ribosomal protein L31 OS=Prochlorococcus marin... [more]
RL31_PROM57.785e-1452.3150S ribosomal protein L31 OS=Prochlorococcus marin... [more]
RL31_SYNR31.017e-1353.8550S ribosomal protein L31 OS=Synechococcus sp. (st... [more]

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Properties
Property NameValue
Genbank descriptionC07004F07SK SaltLeaf1 Citrus clementina cDNA clone C07004F07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX299977 ID=CX299977; Name=CX299977; organism=Citrus clementina; type=EST; length=527bp
CTCTGCTCCAATTCTCCCCACCAGAAAGGTGAAGAACTGCGCAGCAACGG
GCAGTGGTTACAGGACCCGGGCGGTGACGTGTCGAAAGAAGGACATACAC
CCTCAATTCTACGAGGATGCAAAAGTGTACTGTAACGGTGAGCTCGTAAT
GACGACGGGTGGGACCCAGAAGGAGTACGTGGTGGATGTCTGGTCGGGAA
ACCATGCGTTTTACCTCGGCGGCCGCTCTGCTGTTGTCGTCGACGCCGAC
CAAGTCGAGAAGTTCCGTCAGAAGTTCGGAGGATTGTCTGAGATTATGGA
AATTCCCGTGCTTAAAGGAGAGATTGTGTTGCCGCCTAAGCGCAAGTCCG
CGGCCGCTAAAGGTGGCAAGAAGAAGTAGAAATTTGGTACGGCGTTGTTT
TGAGGTAATTGGGGAATGTTTGTGAGTGGATGGATTTTATTTGATCGAAT
GATGTGTTGATATTTGAACGACAAACATTATTATCAAATTATATTTTTCA
TGAAAAAAAANAAAAAAAAAAAAAAAA
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