CX299978

Overview
NameCX299978
Unique NameCX299978
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length689
Libraries
Library NameType
SaltLeaf1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig90 contig Ccv1_Contig90:389..1077. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX299978 vs. ExPASy Swiss-Prot
Match: CAHC_HORVU (Carbonic anhydrase, chloroplastic OS=Hordeum vulgare PE=2 SV=1)

HSP 1 Score: 226.098 bits (575), Expect = 1.373e-58
Identity = 111/190 (58.42%), Postives = 129/190 (67.89%), Query Frame = 2
Query:    5 GFIHFKREKYEKNPALYSELAKGQSPKYMVFACSDSRVCPSHVLDFQPGEAFVVRNVANIVPPYDQTKXXXXXXXXXXXXLHLKVSNIVVIGHSACGGIKGLMSFTFDGNNSTDFIEDWVKIGIPAKSKVLTEHGDKPFGDQCTYCEKEAVNVSLSNLLTYPFVREGLVNKTLALKGGYYDFVNGSFELW 574
            GF  FK E Y+K P  +  L  GQ+PKYMVFAC+DSRVCPS  L  +PGEAF +RN+AN+VP Y + K              LKV  IVVIGHS CGGIK L+S     ++S  F+EDWV+IG PAK KV TE    PF DQCT  EKEAVNVSL NLLTYPFV+EG+ N TL L GG+YDFV+G FE W
Sbjct:  133 GFEKFKTEVYDKKPDFFEPLKAGQAPKYMVFACADSRVCPSVTLGLEPGEAFTIRNIANMVPAYCKNKYAGVGSAIEYAVCALKVEVIVVIGHSRCGGIKALLSLKDGADDSFHFVEDWVRIGFPAKKKVQTECASMPFDDQCTVLEKEAVNVSLQNLLTYPFVKEGVTNGTLKLVGGHYDFVSGKFETW 322          
BLAST of CX299978 vs. ExPASy Swiss-Prot
Match: CYNT_ECOLI (Carbonic anhydrase 1 OS=Escherichia coli (strain K12) GN=cynT PE=1 SV=1)

HSP 1 Score: 102.064 bits (253), Expect = 2.991e-21
Identity = 66/190 (34.74%), Postives = 97/190 (51.05%), Query Frame = 2
Query:    2 EGFIHFKREKYEKNPALYSELAKGQSPKYMVFACSDSRVCPSHVLDFQPGEAFVVRNVANIVPPYDQTKXXXXXXXXXXXXLHLKVSNIVVIGHSACGGIKGLMSFTFDGNNSTDFIEDWVKIGIPAKSKVLTE---HGDKPFGDQCTYCEKEAVNVSLSNLLTYPFVREGLVNKTLALKGGYYDFVNGS 562
            +GF+ F+RE + K  AL+ +LA  QSP+ +  +CSDSR+ P  V   +PG+ FV+RN  NIVP Y   +              L+VS+IV+ GHS CG +  + S      +    +  W++    A  +V+ E   H D P   +     +E V   L+NL T+P VR  L    +AL G  YD  +GS
Sbjct:    6 DGFLKFQREAFPKREALFKQLATQQSPRTLFISCSDSRLVPELVTQREPGDLFVIRNAGNIVPSYG-PEPGGVSASVEYAVAALRVSDIVICGHSNCGAMTAIAS--CQCMDHMPAVSHWLRYADSA--RVVNEARPHSDLP--SKAAAMVRENVIAQLANLQTHPSVRLALEEGRIALHGWVYDIESGS 188          
BLAST of CX299978 vs. ExPASy Swiss-Prot
Match: CYNT_ECO57 (Carbonic anhydrase 1 OS=Escherichia coli O157:H7 GN=cynT PE=3 SV=1)

HSP 1 Score: 102.064 bits (253), Expect = 2.991e-21
Identity = 66/190 (34.74%), Postives = 97/190 (51.05%), Query Frame = 2
Query:    2 EGFIHFKREKYEKNPALYSELAKGQSPKYMVFACSDSRVCPSHVLDFQPGEAFVVRNVANIVPPYDQTKXXXXXXXXXXXXLHLKVSNIVVIGHSACGGIKGLMSFTFDGNNSTDFIEDWVKIGIPAKSKVLTE---HGDKPFGDQCTYCEKEAVNVSLSNLLTYPFVREGLVNKTLALKGGYYDFVNGS 562
            +GF+ F+RE + K  AL+ +LA  QSP+ +  +CSDSR+ P  V   +PG+ FV+RN  NIVP Y   +              L+VS+IV+ GHS CG +  + S      +    +  W++    A  +V+ E   H D P   +     +E V   L+NL T+P VR  L    +AL G  YD  +GS
Sbjct:    6 DGFLKFQREAFPKREALFKQLATQQSPRTLFISCSDSRLVPELVTQREPGDLFVIRNAGNIVPSYG-PEPGGVSASVEYAVAALRVSDIVICGHSNCGAMTAIAS--CQCMDHMPAVSHWLRYADSA--RVVNEARPHSDLP--SKAAAMVRENVIAQLANLQTHPSVRLALEEGRIALHGWVYDIESGS 188          
BLAST of CX299978 vs. ExPASy Swiss-Prot
Match: CYNT_SYNE7 (Carbonic anhydrase OS=Synechococcus elongatus (strain PCC 7942) GN=icfA PE=3 SV=1)

HSP 1 Score: 98.2117 bits (243), Expect = 4.319e-20
Identity = 56/186 (30.11%), Postives = 83/186 (44.62%), Query Frame = 2
Query:    2 EGFIHFKREKYEKNPALYSELAKGQSPKYMVFACSDSRVCPSHVLDFQPGEAFVVRNVANIVPPYDQTKXXXXXXXXXXXXLHLKVSNIVVIGHSACGGIKGLMSFTFDGNNSTDFIEDWVKIGIPAKSKVLTEHGDKPFGDQCTYCEKEAVNVSLSNLLTYPFVREGLVNKTLALKGGYYDFVNG 559
            EG  HF+   Y  +  L+ + AKGQ P+ +   CSDSR+ P+ +     GE FV+RN  N++PP+                  L + ++VV GHS CG +KGL+            + DW++     +  VL  +      D       E V   + NL TYP VR  L    L + G  Y+  +G
Sbjct:    6 EGLRHFRTSYYPSHRDLFEQFAKGQHPRVLFITCSDSRIDPNLITQSGMGELFVIRNAGNLIPPFGAANGGEGASIEYAIAA-LNIEHVVVCGHSHCGAMKGLLKLN-QLQEDMPLVYDWLQHAQATRRLVLDNYSGYETDDLVEILVAENVLTQIENLKTYPIVRSRLFQGKLQIFGWIYEVESG 189          
BLAST of CX299978 vs. ExPASy Swiss-Prot
Match: CYNT_HELPJ (Carbonic anhydrase OS=Helicobacter pylori J99 GN=cynT PE=3 SV=1)

HSP 1 Score: 95.9005 bits (237), Expect = 2.144e-19
Identity = 55/189 (29.10%), Postives = 91/189 (48.15%), Query Frame = 2
Query:    5 GFIHFKREKYEKNPALYSELAKGQSPKYMVFACSDSRVCPSHVLDFQPGEAFVVRNVANIVPPYDQTKXXXXXXXXXXXXL-HLKVSNIVVIGHSACGGIKGLMSFTFDGNN--STDFIEDWVKIGIPAKSKVLTE-HGDKPFGDQCTYCEKEAVNVSLSNLLTYPFVREGLVNKTLALKGGYYDFVNG 559
            G + F+  +YE+   LY  L   Q P  +  +C DSRV P+ +   QPGE +V+RN+ N++PP    K            + H+ V N+++ GHS CG   G +    D      T +I +W++   P K ++         F  +    E+    + L+NLL+Y F++E ++N  L + G +Y    G
Sbjct:    6 GALEFQENEYEEFKELYESLKTKQKPHTLFISCVDSRVVPNLITGTQPGELYVIRNMGNVIPPKTSYKESLSTIASVEYAIAHVGVQNLIICGHSDCGAC-GSIHLIHDETTKAKTPYIANWIQFLEPIKEELKNHPQFSNHFAKRSWLTERLNARLQLNNLLSYDFIQERVINNELKIFGWHYIIETG 193          
BLAST of CX299978 vs. ExPASy Swiss-Prot
Match: CYNT_SYNY3 (Carbonic anhydrase OS=Synechocystis sp. (strain PCC 6803) GN=icfA PE=1 SV=1)

HSP 1 Score: 92.8189 bits (229), Expect = 1.815e-18
Identity = 55/186 (29.57%), Postives = 83/186 (44.62%), Query Frame = 2
Query:    2 EGFIHFKREKYEKNPALYSELAKGQSPKYMVFACSDSRVCPSHVLDFQPGEAFVVRNVANIVPPYDQTKXXXXXXXXXXXXLHLKVSNIVVIGHSACGGIKGLMSFTFDGNNSTDFIEDWVKIGIPAKSKVLTEHGDKPFGDQCTYCEKEAVNVSLSNLLTYPFVREGLVNKTLALKGGYYDFVNG 559
            EG   F+   +  +  L+ +L+ GQ P+ +   CSDSRV P+ +   + G+ FV+RN  NI+PPY                + L+++ I+V GHS CG +KGL+            + DW+K     +  VL  +      D       E +   L NL TYP +   L    L+L G  Y    G
Sbjct:    6 EGLQKFREGYFSSHRDLFEQLSHGQHPRILFICCSDSRVDPNLITQSEVGDLFVIRNAGNIIPPYGAAN-GGEGAAMEYALVALEINQIIVCGHSHCGAMKGLLKLN-SLQEKLPLVYDWLKHTEATRRLVLDNYSHLEGEDLIEVAVAENILTQLKNLQTYPAIHSRLHRGDLSLHGWIYRIEEG 189          
BLAST of CX299978 vs. ExPASy Swiss-Prot
Match: CYNT_PSEAE (Carbonic anhydrase OS=Pseudomonas aeruginosa GN=cynT PE=3 SV=1)

HSP 1 Score: 87.0409 bits (214), Expect = 9.958e-17
Identity = 59/189 (31.22%), Postives = 86/189 (45.50%), Query Frame = 2
Query:    2 EGFIHFKREKYEKNPALYSELAKGQSPKYMVFACSDSRVCPSHVLDFQPGEAFVVRNVANIVPPYDQTKXXXXXXXXXXXXLHLKVSNIVVIGHSACGGIKGLMSFTFDGNNSTDFIEDWVKIGIPAKSKVLTEHGDKPFGDQCTYCEKEAVNVSLSNLLTYPFVREGLVNKTLALKGGYYDFVNGSFE 568
            +GF+ F+R+ Y     L+  LA  Q+PK +  ACSDSRV P  +   +PGE FV+RN  NIVP Y                + L V +IVV GHS CG +  + S      +    +  W+     A++ + + H       +     +  V   L+NL T+P V   L    L L G  YD  +G  +
Sbjct:    6 DGFLRFQRDAYPARSQLFKSLATRQAPKALFIACSDSRVVPELLTQREPGELFVIRNAGNIVPGYGPQPGGVSASVEYAVAV-LGVGDIVVCGHSDCGAMGAIASCAC--LDQLPAVAGWLHHAEAARA-MNSAHEHASEAARLDALVRHNVIAQLANLRTHPCVARALEQGRLNLHGWVYDIESGRID 190          
BLAST of CX299978 vs. ExPASy Swiss-Prot
Match: CYNT_HELPY (Carbonic anhydrase OS=Helicobacter pylori GN=cynT PE=3 SV=1)

HSP 1 Score: 84.3445 bits (207), Expect = 6.454e-16
Identity = 52/189 (27.51%), Postives = 86/189 (45.50%), Query Frame = 2
Query:    5 GFIHFKREKYEKNPALYSELAKGQSPKYMVFACSDSRVCPSHVLDFQPGEAFVVRNVANIVPPYDQTKXXXXXXXXXXXXL-HLKVSNIVVIGHSACGGIKGLMSFTFDGNN--STDFIEDWVKIGIPAKSKVLTE-HGDKPFGDQCTYCEKEAVNVSLSNLLTYPFVREGLVNKTLALKGGYYDFVNG 559
            G + F+  +YE+   LY  L   Q P  +  +C DSRV P+ +   +PGE +V+ N+ N+ PP    K            + H+ V N+++ GHS CG   G +    D      T +I +W++   P K ++         F  +    E+    + L+NLL+Y F++E      L + G +Y    G
Sbjct:    6 GALEFQENEYEELKELYESLKTKQKPHTLFISCVDSRVVPNLITGTKPGELYVICNMGNVNPPKTSYKESLSTIASIEYAIAHVGVQNLIICGHSDCGAC-GSVHLIHDETTKAKTPYIANWIQFLEPVKEELKNHPQFSNHFAKRSWLTERLNARLQLNNLLSYDFIQEKASKNELKIFGWHYIIETG 193          
BLAST of CX299978 vs. ExPASy Swiss-Prot
Match: CAN_EMENI (Carbonic anhydrase OS=Emericella nidulans GN=AN1805 PE=1 SV=2)

HSP 1 Score: 77.0258 bits (188), Expect = 1.030e-13
Identity = 38/94 (40.43%), Postives = 55/94 (58.51%), Query Frame = 2
Query:   41 NPALYSELAKGQSPKYMVFACSDSRVCPSHVLDFQPGEAFVVRNVANIVPPYDQTKXXXXXXXXXXXXLHLKVSNIVVIGHSACGGIKGLMSFT 322
            +P  +++LA GQSP+Y+   CSDSRV  + ++    GE FV RN+AN+VP  D +              HLKV +IVV GH  CGG++  ++ T
Sbjct:   36 DPEFFNKLAAGQSPEYLYIGCSDSRVPANEIMGLDAGEVFVHRNIANVVPTIDLSSMSVINYAVG----HLKVKHIVVCGHYNCGGVQAALTPT 125          
The following BLAST results are available for this feature:
BLAST of CX299978 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 19
Match NameE-valueIdentityDescription
CAHC_HORVU1.373e-5858.42Carbonic anhydrase, chloroplastic OS=Hordeum vulga... [more]
CYNT_ECOLI2.991e-2134.74Carbonic anhydrase 1 OS=Escherichia coli (strain K... [more]
CYNT_ECO572.991e-2134.74Carbonic anhydrase 1 OS=Escherichia coli O157:H7 G... [more]
CYNT_SYNE74.319e-2030.11Carbonic anhydrase OS=Synechococcus elongatus (str... [more]
CYNT_HELPJ2.144e-1929.10Carbonic anhydrase OS=Helicobacter pylori J99 GN=c... [more]
CYNT_SYNY31.815e-1829.57Carbonic anhydrase OS=Synechocystis sp. (strain PC... [more]
CYNT_PSEAE9.958e-1731.22Carbonic anhydrase OS=Pseudomonas aeruginosa GN=cy... [more]
CYNT_HELPY6.454e-1627.51Carbonic anhydrase OS=Helicobacter pylori GN=cynT ... [more]
CAN_EMENI1.030e-1340.43Carbonic anhydrase OS=Emericella nidulans GN=AN180... [more]

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Properties
Property NameValue
Genbank descriptionC07004F08SK SaltLeaf1 Citrus clementina cDNA clone C07004F08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX299978 ID=CX299978; Name=CX299978; organism=Citrus clementina; type=EST; length=689bp
GGAGGGCTTCATTCACTTCAAGAGAGAAAAATACGAGAAAAATCCAGCTC
TGTACTCTGAGCTAGCCAAAGGCCAAAGCCCGAAGTATATGGTATTTGCC
TGCTCAGACTCCAGGGTTTGCCCGTCCCATGTGTTGGATTTTCAACCTGG
GGAAGCTTTCGTGGTTCGCAATGTTGCTAACATTGTTCCACCCTATGATC
AGACTAAATATGCTGGAGTTGGAGCTGCTGTCGAGTATGCAGTTTTGCAT
CTCAAGGTTTCAAACATTGTGGTCATTGGGCACAGCGCCTGTGGTGGCAT
CAAAGGACTCATGTCTTTCACATTTGATGGAAACAACTCCACCGATTTCA
TTGAAGACTGGGTGAAAATTGGCATCCCTGCCAAGTCTAAGGTGTTAACA
GAGCATGGTGACAAGCCTTTTGGAGACCAATGCACATACTGTGAAAAGGA
GGCGGTGAATGTGTCCCTCAGTAATCTGCTAACGTATCCATTTGTGAGAG
AAGGCTTGGTGAACAAAACTCTGGCACTCAAGGGTGGTTACTATGATTTC
GTTAATGGATCATTCGAGCTCTGGGGTCTCGACTTTAGCCTTTCTCCTCC
ACTCTCCGTATGAACATCAACCGATATATGATATCAGTGACCTCATCTTT
GTTCTCTTTATTACCATGTGATCTACTTTTATCTCCCTT
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