CX299980

Overview
NameCX299980
Unique NameCX299980
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length338
Libraries
Library NameType
SaltLeaf1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of CX299980 vs. ExPASy Swiss-Prot
Match: CB21_SOYBN (Chlorophyll a-b binding protein, chloroplastic (Fragment) OS=Glycine max PE=2 SV=1)

HSP 1 Score: 136.732 bits (343), Expect = 3.441e-32
Identity = 65/66 (98.48%), Postives = 66/66 (100.00%), Query Frame = 1 
Query:    1 ADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK 198
            ADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLA+PVNNNAWAYATNFVPGK
Sbjct:  180 ADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLAEPVNNNAWAYATNFVPGK 245
[Close]
BLAST of CX299980 vs. ExPASy Swiss-Prot
Match: CB2A_PINSY (Chlorophyll a-b binding protein type 2 member 1A, chloroplastic OS=Pinus sylvestris PE=2 SV=1)

HSP 1 Score: 136.346 bits (342), Expect = 4.494e-32
Identity = 64/66 (96.97%), Postives = 66/66 (100.00%), Query Frame = 1 
Query:    1 ADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK 198
            ADDP+AFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGP+ENLADHLADPVNNNAWAYATNFVPGK
Sbjct:  213 ADDPDAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPIENLADHLADPVNNNAWAYATNFVPGK 278
[Close]
BLAST of CX299980 vs. ExPASy Swiss-Prot
Match: CB22_PEA (Chlorophyll a-b binding protein AB80, chloroplastic OS=Pisum sativum GN=AB80 PE=1 SV=1)

HSP 1 Score: 136.346 bits (342), Expect = 4.494e-32
Identity = 64/66 (96.97%), Postives = 66/66 (100.00%), Query Frame = 1 
Query:    1 ADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK 198
            ADDPEAFAELKVKE+KNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAW+YATNFVPGK
Sbjct:  204 ADDPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWSYATNFVPGK 269
[Close]
BLAST of CX299980 vs. ExPASy Swiss-Prot
Match: CB2B_PINSY (Chlorophyll a-b binding protein type 2 member 1B, chloroplastic OS=Pinus sylvestris PE=2 SV=1)

HSP 1 Score: 135.961 bits (341), Expect = 5.869e-32
Identity = 64/66 (96.97%), Postives = 66/66 (100.00%), Query Frame = 1 
Query:    1 ADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK 198
            A+DPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGP+ENLADHLADPVNNNAWAYATNFVPGK
Sbjct:  209 AEDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPIENLADHLADPVNNNAWAYATNFVPGK 274
[Close]
BLAST of CX299980 vs. ExPASy Swiss-Prot
Match: CB2D_SOLLC (Chlorophyll a-b binding protein 1D (Fragment) OS=Solanum lycopersicum GN=CAB1D PE=3 SV=1)

HSP 1 Score: 135.576 bits (340), Expect = 7.665e-32
Identity = 64/66 (96.97%), Postives = 66/66 (100.00%), Query Frame = 1 
Query:    1 ADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK 198
            A+DPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAW+YATNFVPGK
Sbjct:   51 AEDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWSYATNFVPGK 116
[Close]
BLAST of CX299980 vs. ExPASy Swiss-Prot
Match: CB27_TOBAC (Chlorophyll a-b binding protein 7, chloroplastic OS=Nicotiana tabacum GN=CAB7 PE=3 SV=1)

HSP 1 Score: 135.576 bits (340), Expect = 7.665e-32
Identity = 64/66 (96.97%), Postives = 65/66 (98.48%), Query Frame = 1 
Query:    1 ADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK 198
            ADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPL+NL DHLADPVNNNAWAYATNFVPGK
Sbjct:  202 ADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLDNLVDHLADPVNNNAWAYATNFVPGK 267
[Close]
BLAST of CX299980 vs. ExPASy Swiss-Prot
Match: CB23_PETSP (Chlorophyll a-b binding protein 22R, chloroplastic OS=Petunia sp. GN=CAB22R PE=3 SV=1)

HSP 1 Score: 135.576 bits (340), Expect = 7.665e-32
Identity = 64/66 (96.97%), Postives = 66/66 (100.00%), Query Frame = 1 
Query:    1 ADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK 198
            A+DPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAW+YATNFVPGK
Sbjct:  202 AEDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWSYATNFVPGK 267
[Close]
BLAST of CX299980 vs. ExPASy Swiss-Prot
Match: CB21_TOBAC (Chlorophyll a-b binding protein 16, chloroplastic OS=Nicotiana tabacum GN=CAB16 PE=2 SV=1)

HSP 1 Score: 135.576 bits (340), Expect = 7.665e-32
Identity = 64/66 (96.97%), Postives = 66/66 (100.00%), Query Frame = 1 
Query:    1 ADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK 198
            A+DPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAW+YATNFVPGK
Sbjct:  201 AEDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWSYATNFVPGK 266
[Close]
BLAST of CX299980 vs. ExPASy Swiss-Prot
Match: CB2C_SOLLC (Chlorophyll a-b binding protein 1C, chloroplastic (Fragments) OS=Solanum lycopersicum GN=CAB1C PE=3 SV=1)

HSP 1 Score: 135.191 bits (339), Expect = 1.001e-31
Identity = 64/66 (96.97%), Postives = 66/66 (100.00%), Query Frame = 1 
Query:    1 ADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK 198
            A+DPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWA+ATNFVPGK
Sbjct:  200 AEDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAFATNFVPGK 265
[Close]
BLAST of CX299980 vs. ExPASy Swiss-Prot
Match: CB2B_SOLLC (Chlorophyll a-b binding protein 1B, chloroplastic OS=Solanum lycopersicum GN=CAB1B PE=3 SV=1)

HSP 1 Score: 135.191 bits (339), Expect = 1.001e-31
Identity = 64/66 (96.97%), Postives = 66/66 (100.00%), Query Frame = 1 
Query:    1 ADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK 198
            A+DPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWA+ATNFVPGK
Sbjct:  200 AEDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAFATNFVPGK 265
The following BLAST results are available for this feature:
BLAST of CX299980 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 70
Match NameE-valueIdentityDescription
CB21_SOYBN3.441e-3298.48Chlorophyll a-b binding protein, chloroplastic (Fr... [more]
CB2A_PINSY4.494e-3296.97Chlorophyll a-b binding protein type 2 member 1A, ... [more]
CB22_PEA4.494e-3296.97Chlorophyll a-b binding protein AB80, chloroplasti... [more]
CB2B_PINSY5.869e-3296.97Chlorophyll a-b binding protein type 2 member 1B, ... [more]
CB2D_SOLLC7.665e-3296.97Chlorophyll a-b binding protein 1D (Fragment) OS=S... [more]
CB27_TOBAC7.665e-3296.97Chlorophyll a-b binding protein 7, chloroplastic O... [more]
CB23_PETSP7.665e-3296.97Chlorophyll a-b binding protein 22R, chloroplastic... [more]
CB21_TOBAC7.665e-3296.97Chlorophyll a-b binding protein 16, chloroplastic ... [more]
CB2C_SOLLC1.001e-3196.97Chlorophyll a-b binding protein 1C, chloroplastic ... [more]
CB2B_SOLLC1.001e-3196.97Chlorophyll a-b binding protein 1B, chloroplastic ... [more]

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Properties
Property NameValue
Genbank descriptionC07004F10SK SaltLeaf1 Citrus clementina cDNA clone C07004F10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX299980 ID=CX299980; Name=CX299980; organism=Citrus clementina; type=EST; length=338bp
GCTGATGACCCGGAGGCTTTTGCTGAGCTCAAGGTTAAGGAAATCAAGAA
TGGAAGGTTGGCTATGTTCTCCATGTTTGGTTTCTTTGTTCAGGCCATTG
TCACCGGCAAGGGACCGTTAGAGAACTTGGCCGACCACTTGGCTGACCCT
GTCAATAACAATGCCTGGGCCTACGCCACCAACTTTGTCCCCGGAAAGTG
AGCTTCGGTTGATAAGAGTTTTTCTCTTTTCGGTTTCTTGGATATCATGT
AAATCTGTTGTGAGCTCATGGAAGCTTTAATTTGAGTTGTGATTATTTAT
AAAATGCTTCAATTTGATCTAAAAAAAAAAAAAAAAAA
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