CX299980

Overview
NameCX299980
Unique NameCX299980
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length338
Libraries
Library NameType
SaltLeaf1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX299980 vs. ExPASy Swiss-Prot
Match: CB2A_PYRPY (Chlorophyll a-b binding protein 1A, chloroplastic OS=Pyrus pyrifolia PE=2 SV=1)

HSP 1 Score: 134.035 bits (336), Expect = 2.230e-31
Identity = 62/66 (93.94%), Postives = 66/66 (100.00%), Query Frame = 1
Query:    1 ADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK 198
            ADDP+AFA++KVKEIKNGRLAMFSMFGFFVQAIVTGKGP+ENLADHLADPVNNNAWAYATNFVPGK
Sbjct:  213 ADDPDAFADVKVKEIKNGRLAMFSMFGFFVQAIVTGKGPIENLADHLADPVNNNAWAYATNFVPGK 278          
BLAST of CX299980 vs. ExPASy Swiss-Prot
Match: CB21_SINAL (Chlorophyll a-b binding protein 1, chloroplastic OS=Sinapis alba GN=CAB1 PE=3 SV=1)

HSP 1 Score: 134.035 bits (336), Expect = 2.230e-31
Identity = 64/66 (96.97%), Postives = 65/66 (98.48%), Query Frame = 1
Query:    1 ADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK 198
            A DPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWA+ATNFVPGK
Sbjct:  201 ATDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAFATNFVPGK 266          
BLAST of CX299980 vs. ExPASy Swiss-Prot
Match: CB25_TOBAC (Chlorophyll a-b binding protein 50, chloroplastic OS=Nicotiana tabacum GN=CAB50 PE=2 SV=1)

HSP 1 Score: 133.65 bits (335), Expect = 2.913e-31
Identity = 63/66 (95.45%), Postives = 65/66 (98.48%), Query Frame = 1
Query:    1 ADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK 198
            A+DPEAFAELKVK IKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAW+YATNFVPGK
Sbjct:  202 AEDPEAFAELKVKHIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWSYATNFVPGK 267          
BLAST of CX299980 vs. ExPASy Swiss-Prot
Match: CB22_HORVU (Chlorophyll a-b binding protein 2, chloroplastic OS=Hordeum vulgare GN=CAB2 PE=3 SV=1)

HSP 1 Score: 133.65 bits (335), Expect = 2.913e-31
Identity = 64/66 (96.97%), Postives = 65/66 (98.48%), Query Frame = 1
Query:    1 ADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK 198
            ADD EAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWA+ATNFVPGK
Sbjct:  199 ADDAEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAFATNFVPGK 264          
BLAST of CX299980 vs. ExPASy Swiss-Prot
Match: CB21_RAPSA (Chlorophyll a-b binding of LHCII type 1 protein (Fragment) OS=Raphanus sativus PE=2 SV=1)

HSP 1 Score: 132.88 bits (333), Expect = 4.968e-31
Identity = 63/64 (98.44%), Postives = 64/64 (100.00%), Query Frame = 1
Query:    7 DPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK 198
            DPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWA+ATNFVPGK
Sbjct:   61 DPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAFATNFVPGK 124          
BLAST of CX299980 vs. ExPASy Swiss-Prot
Match: CB48_MAIZE (Chlorophyll a-b binding protein 48, chloroplastic OS=Zea mays GN=CAB48 PE=3 SV=1)

HSP 1 Score: 132.494 bits (332), Expect = 6.489e-31
Identity = 62/65 (95.38%), Postives = 63/65 (96.92%), Query Frame = 1
Query:    4 DDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK 198
            DDPE FAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGP+ENLADHL DPVNNNAWAYATNFVPGK
Sbjct:  200 DDPERFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPIENLADHLTDPVNNNAWAYATNFVPGK 264          
BLAST of CX299980 vs. ExPASy Swiss-Prot
Match: CB25_SOLLC (Chlorophyll a-b binding protein 5, chloroplastic (Fragment) OS=Solanum lycopersicum GN=CAB5 PE=2 SV=1)

HSP 1 Score: 132.494 bits (332), Expect = 6.489e-31
Identity = 62/66 (93.94%), Postives = 65/66 (98.48%), Query Frame = 1
Query:    1 ADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK 198
            ADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGP+ENL+DH+ADPV NNAWAYATNFVPGK
Sbjct:  172 ADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPIENLSDHIADPVANNAWAYATNFVPGK 237          
BLAST of CX299980 vs. ExPASy Swiss-Prot
Match: CB22_ARATH (Chlorophyll a-b binding protein 2, chloroplastic OS=Arabidopsis thaliana GN=CAB2A PE=1 SV=1)

HSP 1 Score: 132.494 bits (332), Expect = 6.489e-31
Identity = 62/66 (93.94%), Postives = 65/66 (98.48%), Query Frame = 1
Query:    1 ADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK 198
            A DPEAFAELKVKE+KNGRLAMFSMFGFFVQAIVTGKGP+ENLADHLADPVNNNAWA+ATNFVPGK
Sbjct:  202 ATDPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPIENLADHLADPVNNNAWAFATNFVPGK 267          
BLAST of CX299980 vs. ExPASy Swiss-Prot
Match: CB21_ARATH (Chlorophyll a-b binding protein 165/180, chloroplastic OS=Arabidopsis thaliana GN=LHCP-A PE=1 SV=1)

HSP 1 Score: 132.494 bits (332), Expect = 6.489e-31
Identity = 62/66 (93.94%), Postives = 65/66 (98.48%), Query Frame = 1
Query:    1 ADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK 198
            A DPEAFAELKVKE+KNGRLAMFSMFGFFVQAIVTGKGP+ENLADHLADPVNNNAWA+ATNFVPGK
Sbjct:  202 ATDPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPIENLADHLADPVNNNAWAFATNFVPGK 267          
BLAST of CX299980 vs. ExPASy Swiss-Prot
Match: CB21_LEMGI (Chlorophyll a-b binding protein of LHCII type I, chloroplastic OS=Lemna gibba PE=3 SV=1)

HSP 1 Score: 132.109 bits (331), Expect = 8.475e-31
Identity = 62/66 (93.94%), Postives = 65/66 (98.48%), Query Frame = 1
Query:    1 ADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK 198
            ADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGP+ENLADH+ADPV NNAWA+ATNFVPGK
Sbjct:  199 ADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPIENLADHIADPVANNAWAFATNFVPGK 264          
The following BLAST results are available for this feature:
BLAST of CX299980 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 70
Match NameE-valueIdentityDescription
CB2A_PYRPY2.230e-3193.94Chlorophyll a-b binding protein 1A, chloroplastic ... [more]
CB21_SINAL2.230e-3196.97Chlorophyll a-b binding protein 1, chloroplastic O... [more]
CB25_TOBAC2.913e-3195.45Chlorophyll a-b binding protein 50, chloroplastic ... [more]
CB22_HORVU2.913e-3196.97Chlorophyll a-b binding protein 2, chloroplastic O... [more]
CB21_RAPSA4.968e-3198.44Chlorophyll a-b binding of LHCII type 1 protein (F... [more]
CB48_MAIZE6.489e-3195.38Chlorophyll a-b binding protein 48, chloroplastic ... [more]
CB25_SOLLC6.489e-3193.94Chlorophyll a-b binding protein 5, chloroplastic (... [more]
CB22_ARATH6.489e-3193.94Chlorophyll a-b binding protein 2, chloroplastic O... [more]
CB21_ARATH6.489e-3193.94Chlorophyll a-b binding protein 165/180, chloropla... [more]
CB21_LEMGI8.475e-3193.94Chlorophyll a-b binding protein of LHCII type I, c... [more]

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Properties
Property NameValue
Genbank descriptionC07004F10SK SaltLeaf1 Citrus clementina cDNA clone C07004F10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX299980 ID=CX299980; Name=CX299980; organism=Citrus clementina; type=EST; length=338bp
GCTGATGACCCGGAGGCTTTTGCTGAGCTCAAGGTTAAGGAAATCAAGAA
TGGAAGGTTGGCTATGTTCTCCATGTTTGGTTTCTTTGTTCAGGCCATTG
TCACCGGCAAGGGACCGTTAGAGAACTTGGCCGACCACTTGGCTGACCCT
GTCAATAACAATGCCTGGGCCTACGCCACCAACTTTGTCCCCGGAAAGTG
AGCTTCGGTTGATAAGAGTTTTTCTCTTTTCGGTTTCTTGGATATCATGT
AAATCTGTTGTGAGCTCATGGAAGCTTTAATTTGAGTTGTGATTATTTAT
AAAATGCTTCAATTTGATCTAAAAAAAAAAAAAAAAAA
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