CX299980

Overview
NameCX299980
Unique NameCX299980
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length338
Libraries
Library NameType
SaltLeaf1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX299980 vs. ExPASy Swiss-Prot
Match: CB22_PINSY (Chlorophyll a-b binding protein type 2 member 2 (Fragment) OS=Pinus sylvestris PE=2 SV=1)

HSP 1 Score: 128.642 bits (322), Expect = 9.370e-30
Identity = 62/66 (93.94%), Postives = 63/66 (95.45%), Query Frame = 1
Query:    1 ADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK 198
            ADDPEA AELKVKEIKNGRLAMFSMFGFFVQAIVTGKGP+ENL DHLADPV NNAWAYATNFVPGK
Sbjct:   85 ADDPEAKAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPIENLYDHLADPVANNAWAYATNFVPGK 150          
BLAST of CX299980 vs. ExPASy Swiss-Prot
Match: CB22_PETSP (Chlorophyll a-b binding protein 22L, chloroplastic OS=Petunia sp. GN=CAB22L PE=3 SV=1)

HSP 1 Score: 128.642 bits (322), Expect = 9.370e-30
Identity = 60/66 (90.91%), Postives = 63/66 (95.45%), Query Frame = 1
Query:    1 ADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK 198
            A+DPEAFAELKVKE KNGRLAMFSMFGFF+QAIVTGKGPLENLADHL DPVNNNAW+YATNFVP K
Sbjct:  202 AEDPEAFAELKVKETKNGRLAMFSMFGFFIQAIVTGKGPLENLADHLVDPVNNNAWSYATNFVPRK 267          
BLAST of CX299980 vs. ExPASy Swiss-Prot
Match: CB23_ORYSJ (Chlorophyll a-b binding protein, chloroplastic OS=Oryza sativa subsp. japonica GN=RCABP89 PE=2 SV=1)

HSP 1 Score: 127.487 bits (319), Expect = 2.087e-29
Identity = 59/66 (89.39%), Postives = 63/66 (95.45%), Query Frame = 1
Query:    1 ADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK 198
            ADDP+ FAELKVKE+KNGRLAMFSMFGFFVQAIVTGKGP+ENL DH+ADPV NNAWAYATNFVPGK
Sbjct:  198 ADDPDTFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPIENLFDHVADPVANNAWAYATNFVPGK 263          
BLAST of CX299980 vs. ExPASy Swiss-Prot
Match: CB23_ORYSI (Chlorophyll a-b binding protein, chloroplastic OS=Oryza sativa subsp. indica GN=OsI_012078 PE=2 SV=1)

HSP 1 Score: 127.487 bits (319), Expect = 2.087e-29
Identity = 59/66 (89.39%), Postives = 63/66 (95.45%), Query Frame = 1
Query:    1 ADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK 198
            ADDP+ FAELKVKE+KNGRLAMFSMFGFFVQAIVTGKGP+ENL DH+ADPV NNAWAYATNFVPGK
Sbjct:  198 ADDPDTFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPIENLFDHVADPVANNAWAYATNFVPGK 263          
BLAST of CX299980 vs. ExPASy Swiss-Prot
Match: CB21_WHEAT (Chlorophyll a-b binding protein, chloroplastic OS=Triticum aestivum GN=WHAB1.6 PE=3 SV=1)

HSP 1 Score: 124.79 bits (312), Expect = 1.353e-28
Identity = 59/66 (89.39%), Postives = 63/66 (95.45%), Query Frame = 1
Query:    1 ADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK 198
            A+ P+AFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLE+LADH+ADPVNNNAW  ATNFVPGK
Sbjct:  201 AERPQAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLEDLADHIADPVNNNAWLIATNFVPGK 266          
BLAST of CX299980 vs. ExPASy Swiss-Prot
Match: CB215_PEA (Chlorophyll a-b binding protein 215, chloroplastic OS=Pisum sativum GN=CAB215 PE=1 SV=1)

HSP 1 Score: 123.635 bits (309), Expect = 3.014e-28
Identity = 56/66 (84.85%), Postives = 64/66 (96.97%), Query Frame = 1
Query:    1 ADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK 198
            ADDP++FAELKVKE+KNGRLAMFSMFGFFVQAIVTGKGP++NL DH+ADPV NNAWA+ATNFVPG+
Sbjct:  200 ADDPDSFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPIQNLYDHVADPVANNAWAFATNFVPGQ 265          
BLAST of CX299980 vs. ExPASy Swiss-Prot
Match: CB23_SOLLC (Chlorophyll a-b binding protein 13, chloroplastic OS=Solanum lycopersicum GN=CAB13 PE=1 SV=1)

HSP 1 Score: 119.398 bits (298), Expect = 5.684e-27
Identity = 57/65 (87.69%), Postives = 58/65 (89.23%), Query Frame = 1
Query:    1 ADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPG 195
            ADDP  FAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENL DHL +PV NNAW YAT FVPG
Sbjct:  200 ADDPTTFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLLDHLDNPVANNAWVYATKFVPG 264          
BLAST of CX299980 vs. ExPASy Swiss-Prot
Match: CB2_PHYPA (Chlorophyll a-b binding protein, chloroplastic OS=Physcomitrella patens PE=3 SV=1)

HSP 1 Score: 118.242 bits (295), Expect = 1.266e-26
Identity = 57/65 (87.69%), Postives = 58/65 (89.23%), Query Frame = 1
Query:    1 ADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPG 195
            ADDP+ FAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENL DHLADPV NNAWAYA    PG
Sbjct:  203 ADDPDTFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLNDHLADPVANNAWAYAPTSPPG 267          
BLAST of CX299980 vs. ExPASy Swiss-Prot
Match: CB23_HORVU (Chlorophyll a-b binding protein of LHCII type III, chloroplastic OS=Hordeum vulgare GN=LHBC PE=2 SV=1)

HSP 1 Score: 117.472 bits (293), Expect = 2.160e-26
Identity = 56/65 (86.15%), Postives = 57/65 (87.69%), Query Frame = 1
Query:    1 ADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPG 195
            ADDP  FAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENL DHL DPV NNAW +AT F PG
Sbjct:  203 ADDPVTFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLFDHLDDPVANNAWVFATKFAPG 267          
BLAST of CX299980 vs. ExPASy Swiss-Prot
Match: CB2_CHLMO (Chlorophyll a-b binding protein of LHCII type I, chloroplastic OS=Chlamydomonas moewusii PE=2 SV=1)

HSP 1 Score: 110.923 bits (276), Expect = 2.022e-24
Identity = 53/64 (82.81%), Postives = 57/64 (89.06%), Query Frame = 1
Query:    1 ADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVP 192
            ADDP+ FAELKVKEIKNGRLAMFS FGFFVQAIVTGKGP++NLADHLADP  NNA+A AT F P
Sbjct:  191 ADDPDTFAELKVKEIKNGRLAMFSCFGFFVQAIVTGKGPIQNLADHLADPGTNNAFAAATKFTP 254          
The following BLAST results are available for this feature:
BLAST of CX299980 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 70
Match NameE-valueIdentityDescription
CB22_PINSY9.370e-3093.94Chlorophyll a-b binding protein type 2 member 2 (F... [more]
CB22_PETSP9.370e-3090.91Chlorophyll a-b binding protein 22L, chloroplastic... [more]
CB23_ORYSJ2.087e-2989.39Chlorophyll a-b binding protein, chloroplastic OS=... [more]
CB23_ORYSI2.087e-2989.39Chlorophyll a-b binding protein, chloroplastic OS=... [more]
CB21_WHEAT1.353e-2889.39Chlorophyll a-b binding protein, chloroplastic OS=... [more]
CB215_PEA3.014e-2884.85Chlorophyll a-b binding protein 215, chloroplastic... [more]
CB23_SOLLC5.684e-2787.69Chlorophyll a-b binding protein 13, chloroplastic ... [more]
CB2_PHYPA1.266e-2687.69Chlorophyll a-b binding protein, chloroplastic OS=... [more]
CB23_HORVU2.160e-2686.15Chlorophyll a-b binding protein of LHCII type III,... [more]
CB2_CHLMO2.022e-2482.81Chlorophyll a-b binding protein of LHCII type I, c... [more]

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Properties
Property NameValue
Genbank descriptionC07004F10SK SaltLeaf1 Citrus clementina cDNA clone C07004F10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX299980 ID=CX299980; Name=CX299980; organism=Citrus clementina; type=EST; length=338bp
GCTGATGACCCGGAGGCTTTTGCTGAGCTCAAGGTTAAGGAAATCAAGAA
TGGAAGGTTGGCTATGTTCTCCATGTTTGGTTTCTTTGTTCAGGCCATTG
TCACCGGCAAGGGACCGTTAGAGAACTTGGCCGACCACTTGGCTGACCCT
GTCAATAACAATGCCTGGGCCTACGCCACCAACTTTGTCCCCGGAAAGTG
AGCTTCGGTTGATAAGAGTTTTTCTCTTTTCGGTTTCTTGGATATCATGT
AAATCTGTTGTGAGCTCATGGAAGCTTTAATTTGAGTTGTGATTATTTAT
AAAATGCTTCAATTTGATCTAAAAAAAAAAAAAAAAAA
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