CX299980

Overview
NameCX299980
Unique NameCX299980
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length338
Libraries
Library NameType
SaltLeaf1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX299980 vs. ExPASy Swiss-Prot
Match: CB2_DUNSA (Chlorophyll a-b binding protein of LHCII type I, chloroplastic OS=Dunaliella salina PE=2 SV=1)

HSP 1 Score: 109.768 bits (273), Expect = 4.504e-24
Identity = 51/64 (79.69%), Postives = 56/64 (87.50%), Query Frame = 1
Query:    1 ADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVP 192
            ADDP+ FAELKVKEIKNGRLAMF+  GFFVQAIVTGKGP+ENL DHLA+P  NNA+AYAT F P
Sbjct:  209 ADDPDTFAELKVKEIKNGRLAMFACLGFFVQAIVTGKGPIENLTDHLANPAENNAFAYATKFTP 272          
BLAST of CX299980 vs. ExPASy Swiss-Prot
Match: CB2_CHLRE (Chlorophyll a-b binding protein of LHCII type I, chloroplastic OS=Chlamydomonas reinhardtii GN=cabII-1 PE=3 SV=1)

HSP 1 Score: 108.227 bits (269), Expect = 1.310e-23
Identity = 51/64 (79.69%), Postives = 57/64 (89.06%), Query Frame = 1
Query:    1 ADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVP 192
            ADDP+ FAELKVKEIKNGRLA FSMFGFFVQAIVTGKGP++NL DHLA+P  NNA+A+AT F P
Sbjct:  188 ADDPDTFAELKVKEIKNGRLASFSMFGFFVQAIVTGKGPVQNLDDHLANPTVNNAFAFATKFTP 251          
BLAST of CX299980 vs. ExPASy Swiss-Prot
Match: CB2_DUNTE (Chlorophyll a-b binding protein of LHCII type I, chloroplastic OS=Dunaliella tertiolecta PE=2 SV=1)

HSP 1 Score: 106.686 bits (265), Expect = 3.813e-23
Identity = 51/65 (78.46%), Postives = 55/65 (84.62%), Query Frame = 1
Query:    1 ADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPG 195
            ADDP+ FAELKVKEIKNGRLAMFS  GFFVQAIVTGKGP++NL DHLADP  N A+A AT F PG
Sbjct:  188 ADDPDTFAELKVKEIKNGRLAMFSCLGFFVQAIVTGKGPVQNLTDHLADPTVNKAFASATKFTPG 252          
BLAST of CX299980 vs. ExPASy Swiss-Prot
Match: CB2_MALDO (Chlorophyll a-b binding protein AB10, chloroplastic OS=Malus domestica PE=3 SV=1)

HSP 1 Score: 100.523 bits (249), Expect = 2.732e-21
Identity = 51/65 (78.46%), Postives = 55/65 (84.62%), Query Frame = 1
Query:    1 ADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPG 195
            A+D EAFAELKVKE+KNGRLAMFSMFGFFVQAIV+ K  LENLADHL   VNNNA +  TNFVPG
Sbjct:  203 AEDTEAFAELKVKELKNGRLAMFSMFGFFVQAIVSRKDRLENLADHLGWTVNNNALSNVTNFVPG 267          
BLAST of CX299980 vs. ExPASy Swiss-Prot
Match: CB26_ARATH (Chlorophyll a-b binding protein CP26, chloroplastic OS=Arabidopsis thaliana GN=LHCB5 PE=2 SV=1)

HSP 1 Score: 83.9593 bits (206), Expect = 2.647e-16
Identity = 40/54 (74.07%), Postives = 45/54 (83.33%), Query Frame = 1
Query:    1 ADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNN 162
            A DPE  A LKVKEIKNGRLAMF+M GFF+QA VTG+GP+ENLA HL+DP  NN
Sbjct:  212 AKDPEQGALLKVKEIKNGRLAMFAMLGFFIQAYVTGEGPVENLAKHLSDPFGNN 265          
BLAST of CX299980 vs. ExPASy Swiss-Prot
Match: CB21_EUGGR (Chlorophyll a-b binding protein of LHCII type 1 (Fragment) OS=Euglena gracilis PE=2 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 1.314e-15
Identity = 41/65 (63.08%), Postives = 46/65 (70.77%), Query Frame = 1
Query:    1 ADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADP-VNNNAWAYATNFVP 192
            ADDP+ F ELKVKEIKNGRLAM  M GF+ QAIVTG+GP+EN   HL DP  +N   A  T F P
Sbjct:   57 ADDPDTFPELKVKEIKNGRLAMSGMLGFYAQAIVTGEGPVENWLYHLQDPSAHNGLTALVTQFAP 121          
BLAST of CX299980 vs. ExPASy Swiss-Prot
Match: CB13_SOLLC (Chlorophyll a-b binding protein 8, chloroplastic OS=Solanum lycopersicum GN=CAB8 PE=3 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 6.519e-15
Identity = 35/52 (67.31%), Postives = 44/52 (84.62%), Query Frame = 1
Query:    7 DPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNN 162
            D ++  ELK+KEIKNGRLAM ++ G+F+QA+VTG GP +NL DHLADPVNNN
Sbjct:  214 DEKSMKELKLKEIKNGRLAMLAILGYFIQALVTGVGPYQNLLDHLADPVNNN 265          
BLAST of CX299980 vs. ExPASy Swiss-Prot
Match: CB23_PEA (Chlorophyll a-b binding protein 3, chloroplastic OS=Pisum sativum GN=lhca3 PE=1 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 5.519e-14
Identity = 32/52 (61.54%), Postives = 43/52 (82.69%), Query Frame = 1
Query:    7 DPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNN 162
            D ++  ELK+KE+KNGRLAM ++ G+F+Q +VTG GP +NL DH+ADPVNNN
Sbjct:  216 DEKSLKELKLKEVKNGRLAMLAILGYFIQGLVTGVGPYQNLLDHVADPVNNN 267          
BLAST of CX299980 vs. ExPASy Swiss-Prot
Match: CB11_SOLLC (Chlorophyll a-b binding protein 6A, chloroplastic OS=Solanum lycopersicum GN=CAB6A PE=2 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 1.503e-11
Identity = 35/53 (66.04%), Postives = 40/53 (75.47%), Query Frame = 1
Query:    7 DPEAFAELKVKEIKNGRLAMFSMFGFFV-QAIVTGKGPLENLADHLADPVNNN 162
            DP  F ELKVKEIKNGRLA+ ++ GF V Q+   G GPLENLA HLADP +NN
Sbjct:  181 DPAKFEELKVKEIKNGRLALLAIVGFCVQQSAYLGTGPLENLATHLADPWHNN 233          
BLAST of CX299980 vs. ExPASy Swiss-Prot
Match: CB121_HORVU (Chlorophyll a-b binding protein 1B-21, chloroplastic OS=Hordeum vulgare GN=LHC Ib-21 PE=1 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 1.963e-11
Identity = 35/53 (66.04%), Postives = 39/53 (73.58%), Query Frame = 1
Query:    7 DPEAFAELKVKEIKNGRLAMFSMFGFFV-QAIVTGKGPLENLADHLADPVNNN 162
            DP  F ELK+KEIKNGRLAM +  GF V Q+   G GPLENLA HLADP +NN
Sbjct:  180 DPAKFEELKLKEIKNGRLAMLAFVGFCVQQSAYPGTGPLENLATHLADPWHNN 232          
The following BLAST results are available for this feature:
BLAST of CX299980 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 70
Match NameE-valueIdentityDescription
CB2_DUNSA4.504e-2479.69Chlorophyll a-b binding protein of LHCII type I, c... [more]
CB2_CHLRE1.310e-2379.69Chlorophyll a-b binding protein of LHCII type I, c... [more]
CB2_DUNTE3.813e-2378.46Chlorophyll a-b binding protein of LHCII type I, c... [more]
CB2_MALDO2.732e-2178.46Chlorophyll a-b binding protein AB10, chloroplasti... [more]
CB26_ARATH2.647e-1674.07Chlorophyll a-b binding protein CP26, chloroplasti... [more]
CB21_EUGGR1.314e-1563.08Chlorophyll a-b binding protein of LHCII type 1 (F... [more]
CB13_SOLLC6.519e-1567.31Chlorophyll a-b binding protein 8, chloroplastic O... [more]
CB23_PEA5.519e-1461.54Chlorophyll a-b binding protein 3, chloroplastic O... [more]
CB11_SOLLC1.503e-1166.04Chlorophyll a-b binding protein 6A, chloroplastic ... [more]
CB121_HORVU1.963e-1166.04Chlorophyll a-b binding protein 1B-21, chloroplast... [more]

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Properties
Property NameValue
Genbank descriptionC07004F10SK SaltLeaf1 Citrus clementina cDNA clone C07004F10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX299980 ID=CX299980; Name=CX299980; organism=Citrus clementina; type=EST; length=338bp
GCTGATGACCCGGAGGCTTTTGCTGAGCTCAAGGTTAAGGAAATCAAGAA
TGGAAGGTTGGCTATGTTCTCCATGTTTGGTTTCTTTGTTCAGGCCATTG
TCACCGGCAAGGGACCGTTAGAGAACTTGGCCGACCACTTGGCTGACCCT
GTCAATAACAATGCCTGGGCCTACGCCACCAACTTTGTCCCCGGAAAGTG
AGCTTCGGTTGATAAGAGTTTTTCTCTTTTCGGTTTCTTGGATATCATGT
AAATCTGTTGTGAGCTCATGGAAGCTTTAATTTGAGTTGTGATTATTTAT
AAAATGCTTCAATTTGATCTAAAAAAAAAAAAAAAAAA
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