CX299986

Overview
NameCX299986
Unique NameCX299986
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length580
Libraries
Library NameType
SaltLeaf1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CX299986_ssr377 microsatellite CX299986_ssr377:377..388. BLAST: Citrus ESTs to Prunus persica proteins V1
Ccv1_Contig7097 contig Ccv1_Contig7097:296..875. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX299986 vs. ExPASy Swiss-Prot
Match: THIO1_ANASP (Thioredoxin-1 OS=Anabaena sp. (strain PCC 7120) GN=trxA PE=3 SV=2)

HSP 1 Score: 149.828 bits (377), Expect = 8.917e-36
Identity = 65/101 (64.36%), Postives = 87/101 (86.14%), Query Frame = 2
Query:   23 VTDATWQSLVLDSGSPVLVEFWAPWCGPCRMIHPIIDELSKQYVGKLKCYKVNTDESPSIATRYGIRSIPTVMIFKNGEKKDTVIGAVPKSTLTTSIEKFL 325
            VTD+T++  VLDS  PVLV+FWAPWCGPCRM+ P++DE+++QY GK+K  KVNTDE+P +A++YGIRSIPT+MIFK G+K D V+GAVPK+TL+ ++EK L
Sbjct:    7 VTDSTFKQEVLDSDVPVLVDFWAPWCGPCRMVAPVVDEIAQQYEGKIKVVKVNTDENPQVASQYGIRSIPTLMIFKGGQKVDMVVGAVPKTTLSQTLEKHL 107          
BLAST of CX299986 vs. ExPASy Swiss-Prot
Match: THIO1_ANASO (Thioredoxin-1 OS=Anabaena sp. (strain PCC 7119) GN=trxA PE=1 SV=2)

HSP 1 Score: 149.828 bits (377), Expect = 8.917e-36
Identity = 65/101 (64.36%), Postives = 87/101 (86.14%), Query Frame = 2
Query:   23 VTDATWQSLVLDSGSPVLVEFWAPWCGPCRMIHPIIDELSKQYVGKLKCYKVNTDESPSIATRYGIRSIPTVMIFKNGEKKDTVIGAVPKSTLTTSIEKFL 325
            VTD+T++  VLDS  PVLV+FWAPWCGPCRM+ P++DE+++QY GK+K  KVNTDE+P +A++YGIRSIPT+MIFK G+K D V+GAVPK+TL+ ++EK L
Sbjct:    7 VTDSTFKQEVLDSDVPVLVDFWAPWCGPCRMVAPVVDEIAQQYEGKIKVVKVNTDENPQVASQYGIRSIPTLMIFKGGQKVDMVVGAVPKTTLSQTLEKHL 107          
BLAST of CX299986 vs. ExPASy Swiss-Prot
Match: THIO_SYNY3 (Thioredoxin OS=Synechocystis sp. (strain PCC 6803) GN=trxA PE=1 SV=3)

HSP 1 Score: 148.673 bits (374), Expect = 1.986e-35
Identity = 64/103 (62.14%), Postives = 89/103 (86.41%), Query Frame = 2
Query:   17 PAVTDATWQSLVLDSGSPVLVEFWAPWCGPCRMIHPIIDELSKQYVGKLKCYKVNTDESPSIATRYGIRSIPTVMIFKNGEKKDTVIGAVPKSTLTTSIEKFL 325
            P V+DA+++  VLDS  PVLV+FWAPWCGPCRM+ P++DE+S+QY GK+K  K+NTDE+P+ A++YGIRSIPT+MIFK G++ D V+GAVPK+TL +++EK+L
Sbjct:    5 PQVSDASFKEDVLDSELPVLVDFWAPWCGPCRMVAPVVDEISQQYEGKVKVVKLNTDENPNTASQYGIRSIPTLMIFKGGQRVDMVVGAVPKTTLASTLEKYL 107          
BLAST of CX299986 vs. ExPASy Swiss-Prot
Match: THIO1_SYNE7 (Thioredoxin-1 OS=Synechococcus elongatus (strain PCC 7942) GN=trxA PE=3 SV=2)

HSP 1 Score: 148.673 bits (374), Expect = 1.986e-35
Identity = 64/102 (62.75%), Postives = 89/102 (87.25%), Query Frame = 2
Query:   20 AVTDATWQSLVLDSGSPVLVEFWAPWCGPCRMIHPIIDELSKQYVGKLKCYKVNTDESPSIATRYGIRSIPTVMIFKNGEKKDTVIGAVPKSTLTTSIEKFL 325
            AVTDAT++  VL+S  PVLV+FWAPWCGPCRM+ P++DE+++QY  ++K  KVNTDE+PS+A++YGIRSIPT+MIFK+G++ DTV+GAVPK+TL  +++K L
Sbjct:    6 AVTDATFKQEVLESSIPVLVDFWAPWCGPCRMVAPVVDEIAQQYSDQVKVVKVNTDENPSVASQYGIRSIPTLMIFKDGQRVDTVVGAVPKTTLANTLDKHL 107          
BLAST of CX299986 vs. ExPASy Swiss-Prot
Match: THIO_CYACA (Thioredoxin OS=Cyanidium caldarium GN=trxA PE=3 SV=1)

HSP 1 Score: 142.51 bits (358), Expect = 1.424e-33
Identity = 63/101 (62.38%), Postives = 87/101 (86.14%), Query Frame = 2
Query:   23 VTDATWQSLVLDSGSPVLVEFWAPWCGPCRMIHPIIDELSKQYVGKLKCYKVNTDESPSIATRYGIRSIPTVMIFKNGEKKDTVIGAVPKSTLTTSIEKFL 325
            VTD +++  V++S   VLV+FWAPWCGPCRMI P+IDEL+++YV ++K  K+NTDE+PSI+  YGIRSIPT+M+FK+G++ DTVIGAVPKSTLT +++K+L
Sbjct:    7 VTDFSFEKEVVNSEKLVLVDFWAPWCGPCRMISPVIDELAQEYVEQVKIVKINTDENPSISAEYGIRSIPTLMLFKDGKRVDTVIGAVPKSTLTNALKKYL 107          
BLAST of CX299986 vs. ExPASy Swiss-Prot
Match: THIO_PORYE (Thioredoxin OS=Porphyra yezoensis GN=trxA PE=3 SV=1)

HSP 1 Score: 141.739 bits (356), Expect = 2.428e-33
Identity = 59/101 (58.42%), Postives = 85/101 (84.16%), Query Frame = 2
Query:   23 VTDATWQSLVLDSGSPVLVEFWAPWCGPCRMIHPIIDELSKQYVGKLKCYKVNTDESPSIATRYGIRSIPTVMIFKNGEKKDTVIGAVPKSTLTTSIEKFL 325
            VTDA+++  V+++  PVLV+FWAPWCGPCRM+ P++DE++++Y   +K  K+NTD++P+IA  YGIRSIPT+MIFK GE+ DTVIGAVPKSTL +++ K++
Sbjct:    6 VTDASFKQEVINNNLPVLVDFWAPWCGPCRMVSPVVDEIAEEYESSIKVVKINTDDNPTIAAEYGIRSIPTLMIFKAGERVDTVIGAVPKSTLASTLNKYI 106          
BLAST of CX299986 vs. ExPASy Swiss-Prot
Match: THIO_PORPU (Thioredoxin OS=Porphyra purpurea GN=trxA PE=3 SV=1)

HSP 1 Score: 139.813 bits (351), Expect = 9.227e-33
Identity = 58/101 (57.43%), Postives = 85/101 (84.16%), Query Frame = 2
Query:   23 VTDATWQSLVLDSGSPVLVEFWAPWCGPCRMIHPIIDELSKQYVGKLKCYKVNTDESPSIATRYGIRSIPTVMIFKNGEKKDTVIGAVPKSTLTTSIEKFL 325
            VTDA+++  V+++  PVLV+FWAPWCGPCRM+ P++D ++++Y   +K  K+NTD++P+IA  YGIRSIPT+MIFK+GE+ DTVIGAVPKSTL +++ K++
Sbjct:    6 VTDASFKQEVINNDLPVLVDFWAPWCGPCRMVSPVVDAIAEEYESSIKVVKINTDDNPTIAAEYGIRSIPTLMIFKSGERVDTVIGAVPKSTLESTLNKYI 106          
BLAST of CX299986 vs. ExPASy Swiss-Prot
Match: THIO_GRIPA (Thioredoxin OS=Griffithsia pacifica GN=trxA PE=3 SV=2)

HSP 1 Score: 134.806 bits (338), Expect = 2.968e-31
Identity = 63/101 (62.38%), Postives = 78/101 (77.23%), Query Frame = 2
Query:   23 VTDATWQSLVLDSGSPVLVEFWAPWCGPCRMIHPIIDELSKQYVGKLKCYKVNTDESPSIATRYGIRSIPTVMIFKNGEKKDTVIGAVPKSTLTTSIEKFL 325
            V D ++   V++S  PVLV+FWAPWCGPCRMI   IDE++  Y  KLK  KVNTD++P+IAT YGIRSIPTVMIF NG+K DTV+GAVPK TL  +++K L
Sbjct:    6 VIDTSFHEEVINSRQPVLVDFWAPWCGPCRMIASTIDEIAHDYKDKLKVVKVNTDQNPTIATEYGIRSIPTVMIFINGKKVDTVVGAVPKLTLLNTLQKHL 106          
BLAST of CX299986 vs. ExPASy Swiss-Prot
Match: THIO_RICFE (Thioredoxin OS=Rickettsia felis GN=trxA PE=3 SV=2)

HSP 1 Score: 127.487 bits (319), Expect = 4.739e-29
Identity = 58/99 (58.59%), Postives = 78/99 (78.79%), Query Frame = 2
Query:   23 VTDATWQSLVLDSGSPVLVEFWAPWCGPCRMIHPIIDELSKQYVGKLKCYKVNTDESPSIATRYGIRSIPTVMIFKNGEKKDTVIGAVPKSTLTTSIEK 319
            VTD++++  VL+S  PVLV+FWA WCGPC+M+ PIIDE+SK+  GK+K  K+N DE+P+I + YGIRSIPT+M+FKNGE+KDT IG   K++L   I K
Sbjct:    5 VTDSSFKKEVLESDLPVLVDFWAEWCGPCKMLTPIIDEISKELKGKVKVLKMNIDENPNIPSEYGIRSIPTIMLFKNGEQKDTKIGLQQKNSLLDWINK 103          
BLAST of CX299986 vs. ExPASy Swiss-Prot
Match: THIO_CYAME (Thioredoxin OS=Cyanidioschyzon merolae GN=trxA PE=3 SV=1)

HSP 1 Score: 127.102 bits (318), Expect = 6.189e-29
Identity = 59/101 (58.42%), Postives = 81/101 (80.20%), Query Frame = 2
Query:   23 VTDATWQSLVLDSGSPVLVEFWAPWCGPCRMIHPIIDELSKQYVGKLKCYKVNTDESPSIATRYGIRSIPTVMIFKNGEKKDTVIGAVPKSTLTTSIEKFL 325
            + + T+++ VL S   VLV+FWAPWCGPCRMI PI++E++K++   LK  +VNTDE+P++AT YGIRSIPT+M+FK G++ DTVIGAVPKS L  +I K+L
Sbjct:    4 IDELTFENEVLQSEKLVLVDFWAPWCGPCRMIGPILEEIAKEF--NLKVVQVNTDENPNLATFYGIRSIPTLMLFKKGQRVDTVIGAVPKSILIHTINKYL 102          
The following BLAST results are available for this feature:
BLAST of CX299986 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 124
Match NameE-valueIdentityDescription
THIO1_ANASP8.917e-3664.36Thioredoxin-1 OS=Anabaena sp. (strain PCC 7120) GN... [more]
THIO1_ANASO8.917e-3664.36Thioredoxin-1 OS=Anabaena sp. (strain PCC 7119) GN... [more]
THIO_SYNY31.986e-3562.14Thioredoxin OS=Synechocystis sp. (strain PCC 6803)... [more]
THIO1_SYNE71.986e-3562.75Thioredoxin-1 OS=Synechococcus elongatus (strain P... [more]
THIO_CYACA1.424e-3362.38Thioredoxin OS=Cyanidium caldarium GN=trxA PE=3 SV... [more]
THIO_PORYE2.428e-3358.42Thioredoxin OS=Porphyra yezoensis GN=trxA PE=3 SV=... [more]
THIO_PORPU9.227e-3357.43Thioredoxin OS=Porphyra purpurea GN=trxA PE=3 SV=1[more]
THIO_GRIPA2.968e-3162.38Thioredoxin OS=Griffithsia pacifica GN=trxA PE=3 S... [more]
THIO_RICFE4.739e-2958.59Thioredoxin OS=Rickettsia felis GN=trxA PE=3 SV=2[more]
THIO_CYAME6.189e-2958.42Thioredoxin OS=Cyanidioschyzon merolae GN=trxA PE=... [more]

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Properties
Property NameValue
Genbank descriptionC07004G04SK SaltLeaf1 Citrus clementina cDNA clone C07004G04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX299986 ID=CX299986; Name=CX299986; organism=Citrus clementina; type=EST; length=580bp
AATTCGGCACGAGGGGCCTGCTGTGACAGATGCAACATGGCAATCACTTG
TTCTTGACTCTGGATCACCTGTGCTTGTTGAATTCTGGGCTCCATGGTGC
GGGCCTTGCCGGATGATCCACCCTATTATTGATGAGCTATCAAAGCAATA
TGTGGGGAAGCTAAAATGCTATAAGGTTAATACTGATGAGAGTCCTTCAA
TTGCTACTAGATATGGAATTAGGAGCATCCCAACTGTCATGATATTTAAG
AATGGCGAGAAGAAAGATACAGTGATTGGTGCTGTTCCTAAATCCACTTT
GACCACCAGCATAGAGAAATTCTTGTAGACATGGTAAGTAAAGGACGCGT
TTGCTAGAAACAGGCTCTCTGTAGCATTTGTTTGTTTGCCTTGTAGCTTA
CTATGCCTTGGGTTAAGATACTTTGCTTTCCACAATAAATTATCTTCTGC
CCTTGTATAGTTATGAGGAGATGTGATTGTGTTTCCTGATTCCATTACTA
AAGTTAGTTGTCTATATATTTCTAACTTCTACGAGTAATTTCAATAGAAG
TCTGCTTTTTATAAAAAAAAAAAAAAAAAA
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