CX299986

Overview
NameCX299986
Unique NameCX299986
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length580
Libraries
Library NameType
SaltLeaf1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CX299986_ssr377 microsatellite CX299986_ssr377:377..388. BLAST: Citrus ESTs to Prunus persica proteins V1
Ccv1_Contig7097 contig Ccv1_Contig7097:296..875. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX299986 vs. ExPASy Swiss-Prot
Match: THIO_STAAR (Thioredoxin OS=Staphylococcus aureus (strain MRSA252) GN=trxA PE=3 SV=1)

HSP 1 Score: 100.523 bits (249), Expect = 6.204e-21
Identity = 48/101 (47.52%), Postives = 69/101 (68.32%), Query Frame = 2
Query:   23 VTDATWQSLVLDSGSPVLVEFWAPWCGPCRMIHPIIDELSKQYVGKLKCYKVNTDESPSIATRYGIRSIPTVMIFKNGEKKDTVIGAVPKSTLTTSIEKFL 325
            VTDA + S V +SG   LV+FWA WCGPC+MI P+++EL+  Y GK    K++ DE+PS A +Y + SIPT+++FK+G+  D V+G  PK  L   ++K L
Sbjct:    6 VTDADFDSKV-ESGVQ-LVDFWATWCGPCKMIAPVLEELAADYEGKADILKLDVDENPSTAAKYEVMSIPTLIVFKDGQPVDKVVGFQPKENLAEVLDKHL 104          
BLAST of CX299986 vs. ExPASy Swiss-Prot
Match: THIO_STAAN (Thioredoxin OS=Staphylococcus aureus (strain N315) GN=trxA PE=1 SV=1)

HSP 1 Score: 100.523 bits (249), Expect = 6.204e-21
Identity = 48/101 (47.52%), Postives = 69/101 (68.32%), Query Frame = 2
Query:   23 VTDATWQSLVLDSGSPVLVEFWAPWCGPCRMIHPIIDELSKQYVGKLKCYKVNTDESPSIATRYGIRSIPTVMIFKNGEKKDTVIGAVPKSTLTTSIEKFL 325
            VTDA + S V +SG   LV+FWA WCGPC+MI P+++EL+  Y GK    K++ DE+PS A +Y + SIPT+++FK+G+  D V+G  PK  L   ++K L
Sbjct:    6 VTDADFDSKV-ESGVQ-LVDFWATWCGPCKMIAPVLEELAADYEGKADILKLDVDENPSTAAKYEVMSIPTLIVFKDGQPVDKVVGFQPKENLAEVLDKHL 104          
BLAST of CX299986 vs. ExPASy Swiss-Prot
Match: THIO_STAAM (Thioredoxin OS=Staphylococcus aureus (strain Mu50 / ATCC 700699) GN=trxA PE=1 SV=1)

HSP 1 Score: 100.523 bits (249), Expect = 6.204e-21
Identity = 48/101 (47.52%), Postives = 69/101 (68.32%), Query Frame = 2
Query:   23 VTDATWQSLVLDSGSPVLVEFWAPWCGPCRMIHPIIDELSKQYVGKLKCYKVNTDESPSIATRYGIRSIPTVMIFKNGEKKDTVIGAVPKSTLTTSIEKFL 325
            VTDA + S V +SG   LV+FWA WCGPC+MI P+++EL+  Y GK    K++ DE+PS A +Y + SIPT+++FK+G+  D V+G  PK  L   ++K L
Sbjct:    6 VTDADFDSKV-ESGVQ-LVDFWATWCGPCKMIAPVLEELAADYEGKADILKLDVDENPSTAAKYEVMSIPTLIVFKDGQPVDKVVGFQPKENLAEVLDKHL 104          
BLAST of CX299986 vs. ExPASy Swiss-Prot
Match: THIO_STAAC (Thioredoxin OS=Staphylococcus aureus (strain COL) GN=trxA PE=3 SV=1)

HSP 1 Score: 100.523 bits (249), Expect = 6.204e-21
Identity = 48/101 (47.52%), Postives = 69/101 (68.32%), Query Frame = 2
Query:   23 VTDATWQSLVLDSGSPVLVEFWAPWCGPCRMIHPIIDELSKQYVGKLKCYKVNTDESPSIATRYGIRSIPTVMIFKNGEKKDTVIGAVPKSTLTTSIEKFL 325
            VTDA + S V +SG   LV+FWA WCGPC+MI P+++EL+  Y GK    K++ DE+PS A +Y + SIPT+++FK+G+  D V+G  PK  L   ++K L
Sbjct:    6 VTDADFDSKV-ESGVQ-LVDFWATWCGPCKMIAPVLEELAADYEGKADILKLDVDENPSTAAKYEVMSIPTLIVFKDGQPVDKVVGFQPKENLAEVLDKHL 104          
BLAST of CX299986 vs. ExPASy Swiss-Prot
Match: THIO_STAAB (Thioredoxin OS=Staphylococcus aureus (strain bovine RF122 / ET3-1) GN=trxA PE=3 SV=1)

HSP 1 Score: 100.523 bits (249), Expect = 6.204e-21
Identity = 48/101 (47.52%), Postives = 69/101 (68.32%), Query Frame = 2
Query:   23 VTDATWQSLVLDSGSPVLVEFWAPWCGPCRMIHPIIDELSKQYVGKLKCYKVNTDESPSIATRYGIRSIPTVMIFKNGEKKDTVIGAVPKSTLTTSIEKFL 325
            VTDA + S V +SG   LV+FWA WCGPC+MI P+++EL+  Y GK    K++ DE+PS A +Y + SIPT+++FK+G+  D V+G  PK  L   ++K L
Sbjct:    6 VTDADFDSKV-ESGVQ-LVDFWATWCGPCKMIAPVLEELAADYEGKADILKLDVDENPSTAAKYEVMSIPTLIVFKDGQPVDKVVGFQPKENLAEVLDKHL 104          
BLAST of CX299986 vs. ExPASy Swiss-Prot
Match: THIO_STAA8 (Thioredoxin OS=Staphylococcus aureus (strain NCTC 8325) GN=trxA PE=2 SV=1)

HSP 1 Score: 100.523 bits (249), Expect = 6.204e-21
Identity = 48/101 (47.52%), Postives = 69/101 (68.32%), Query Frame = 2
Query:   23 VTDATWQSLVLDSGSPVLVEFWAPWCGPCRMIHPIIDELSKQYVGKLKCYKVNTDESPSIATRYGIRSIPTVMIFKNGEKKDTVIGAVPKSTLTTSIEKFL 325
            VTDA + S V +SG   LV+FWA WCGPC+MI P+++EL+  Y GK    K++ DE+PS A +Y + SIPT+++FK+G+  D V+G  PK  L   ++K L
Sbjct:    6 VTDADFDSKV-ESGVQ-LVDFWATWCGPCKMIAPVLEELAADYEGKADILKLDVDENPSTAAKYEVMSIPTLIVFKDGQPVDKVVGFQPKENLAEVLDKHL 104          
BLAST of CX299986 vs. ExPASy Swiss-Prot
Match: THIO_STAA3 (Thioredoxin OS=Staphylococcus aureus (strain USA300) GN=trxA PE=3 SV=1)

HSP 1 Score: 100.523 bits (249), Expect = 6.204e-21
Identity = 48/101 (47.52%), Postives = 69/101 (68.32%), Query Frame = 2
Query:   23 VTDATWQSLVLDSGSPVLVEFWAPWCGPCRMIHPIIDELSKQYVGKLKCYKVNTDESPSIATRYGIRSIPTVMIFKNGEKKDTVIGAVPKSTLTTSIEKFL 325
            VTDA + S V +SG   LV+FWA WCGPC+MI P+++EL+  Y GK    K++ DE+PS A +Y + SIPT+++FK+G+  D V+G  PK  L   ++K L
Sbjct:    6 VTDADFDSKV-ESGVQ-LVDFWATWCGPCKMIAPVLEELAADYEGKADILKLDVDENPSTAAKYEVMSIPTLIVFKDGQPVDKVVGFQPKENLAEVLDKHL 104          
BLAST of CX299986 vs. ExPASy Swiss-Prot
Match: THIO2_CORNE (Thioredoxin C-2 OS=Corynebacterium nephridii PE=1 SV=3)

HSP 1 Score: 100.523 bits (249), Expect = 6.204e-21
Identity = 44/98 (44.90%), Postives = 66/98 (67.35%), Query Frame = 2
Query:   26 TDATWQSLVLDSGSPVLVEFWAPWCGPCRMIHPIIDELSKQYVGKLKCYKVNTDESPSIATRYGIRSIPTVMIFKNGEKKDTVIGAVPKSTLTTSIEK 319
            TD  +Q+ VLD+ +PVLV+FWA WC PC+ I P+++ELS +Y GK+K  KV+       A +Y IR+IP +++FK+GE     +GA P+S L   I++
Sbjct:    9 TDENFQADVLDAETPVLVDFWAGWCAPCKAIAPVLEELSNEYAGKVKIVKVDVTSCEDTAVKYNIRNIPALLMFKDGEVVAQQVGAAPRSKLAAFIDQ 106          
BLAST of CX299986 vs. ExPASy Swiss-Prot
Match: THIO_STAES (Thioredoxin OS=Staphylococcus epidermidis (strain ATCC 12228) GN=trxA PE=3 SV=1)

HSP 1 Score: 99.3673 bits (246), Expect = 1.382e-20
Identity = 47/101 (46.53%), Postives = 69/101 (68.32%), Query Frame = 2
Query:   23 VTDATWQSLVLDSGSPVLVEFWAPWCGPCRMIHPIIDELSKQYVGKLKCYKVNTDESPSIATRYGIRSIPTVMIFKNGEKKDTVIGAVPKSTLTTSIEKFL 325
            VTD+ + S + +SG   LV+FWA WCGPC+MI P+++EL+  Y GK    K++ DE+PS A +Y + SIPT+++FK+GE  D V+G  PK  L   ++K L
Sbjct:    6 VTDSDFDSKI-ESGVK-LVDFWATWCGPCKMIAPVLEELAGDYDGKADILKLDVDENPSTAAKYEVMSIPTLIVFKDGEPVDKVVGFQPKENLAEVLDKHL 104          
BLAST of CX299986 vs. ExPASy Swiss-Prot
Match: THIO_STAEQ (Thioredoxin OS=Staphylococcus epidermidis (strain ATCC 35984 / RP62A) GN=trxA PE=3 SV=1)

HSP 1 Score: 99.3673 bits (246), Expect = 1.382e-20
Identity = 47/101 (46.53%), Postives = 69/101 (68.32%), Query Frame = 2
Query:   23 VTDATWQSLVLDSGSPVLVEFWAPWCGPCRMIHPIIDELSKQYVGKLKCYKVNTDESPSIATRYGIRSIPTVMIFKNGEKKDTVIGAVPKSTLTTSIEKFL 325
            VTD+ + S + +SG   LV+FWA WCGPC+MI P+++EL+  Y GK    K++ DE+PS A +Y + SIPT+++FK+GE  D V+G  PK  L   ++K L
Sbjct:    6 VTDSDFDSKI-ESGVK-LVDFWATWCGPCKMIAPVLEELAGDYDGKADILKLDVDENPSTAAKYEVMSIPTLIVFKDGEPVDKVVGFQPKENLAEVLDKHL 104          
The following BLAST results are available for this feature:
BLAST of CX299986 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 124
Match NameE-valueIdentityDescription
THIO_STAAR6.204e-2147.52Thioredoxin OS=Staphylococcus aureus (strain MRSA2... [more]
THIO_STAAN6.204e-2147.52Thioredoxin OS=Staphylococcus aureus (strain N315)... [more]
THIO_STAAM6.204e-2147.52Thioredoxin OS=Staphylococcus aureus (strain Mu50 ... [more]
THIO_STAAC6.204e-2147.52Thioredoxin OS=Staphylococcus aureus (strain COL) ... [more]
THIO_STAAB6.204e-2147.52Thioredoxin OS=Staphylococcus aureus (strain bovin... [more]
THIO_STAA86.204e-2147.52Thioredoxin OS=Staphylococcus aureus (strain NCTC ... [more]
THIO_STAA36.204e-2147.52Thioredoxin OS=Staphylococcus aureus (strain USA30... [more]
THIO2_CORNE6.204e-2144.90Thioredoxin C-2 OS=Corynebacterium nephridii PE=1 ... [more]
THIO_STAES1.382e-2046.53Thioredoxin OS=Staphylococcus epidermidis (strain ... [more]
THIO_STAEQ1.382e-2046.53Thioredoxin OS=Staphylococcus epidermidis (strain ... [more]

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Properties
Property NameValue
Genbank descriptionC07004G04SK SaltLeaf1 Citrus clementina cDNA clone C07004G04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX299986 ID=CX299986; Name=CX299986; organism=Citrus clementina; type=EST; length=580bp
AATTCGGCACGAGGGGCCTGCTGTGACAGATGCAACATGGCAATCACTTG
TTCTTGACTCTGGATCACCTGTGCTTGTTGAATTCTGGGCTCCATGGTGC
GGGCCTTGCCGGATGATCCACCCTATTATTGATGAGCTATCAAAGCAATA
TGTGGGGAAGCTAAAATGCTATAAGGTTAATACTGATGAGAGTCCTTCAA
TTGCTACTAGATATGGAATTAGGAGCATCCCAACTGTCATGATATTTAAG
AATGGCGAGAAGAAAGATACAGTGATTGGTGCTGTTCCTAAATCCACTTT
GACCACCAGCATAGAGAAATTCTTGTAGACATGGTAAGTAAAGGACGCGT
TTGCTAGAAACAGGCTCTCTGTAGCATTTGTTTGTTTGCCTTGTAGCTTA
CTATGCCTTGGGTTAAGATACTTTGCTTTCCACAATAAATTATCTTCTGC
CCTTGTATAGTTATGAGGAGATGTGATTGTGTTTCCTGATTCCATTACTA
AAGTTAGTTGTCTATATATTTCTAACTTCTACGAGTAATTTCAATAGAAG
TCTGCTTTTTATAAAAAAAAAAAAAAAAAA
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