CX299986

Overview
NameCX299986
Unique NameCX299986
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length580
Libraries
Library NameType
SaltLeaf1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CX299986_ssr377 microsatellite CX299986_ssr377:377..388. BLAST: Citrus ESTs to Prunus persica proteins V1
Ccv1_Contig7097 contig Ccv1_Contig7097:296..875. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX299986 vs. ExPASy Swiss-Prot
Match: THIO1_SYNY3 (Thioredoxin-like protein slr0233 OS=Synechocystis sp. (strain PCC 6803) GN=slr0233 PE=3 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 5.087e-15
Identity = 34/98 (34.69%), Postives = 64/98 (65.31%), Query Frame = 2
Query:   32 ATWQSLVLDSGSPVLVEFWAPWCGPCRMIHPIIDELSKQYVGKLKCYKVNTDESPSIATRYGIRSIPTVMIFKNGEKKDTVIGAVPKSTLTTSIEKFL 325
            A +  ++  S  PVLV+F+A WCGPC+M+ PI++++      +++  K++TD+ P+IAT+Y I+S+PT+++FK G+    + G    + L   ++ F+
Sbjct:    8 ANFAEMLAGSPKPVLVDFYATWCGPCQMMAPILEQVGSHLRQQIQVVKIDTDKYPAIATQYQIQSLPTLVLFKQGQPVHRMEGVQQAAQLIQQLQVFV 105          
BLAST of CX299986 vs. ExPASy Swiss-Prot
Match: THIO2_SYNY3 (Thioredoxin-like protein slr1139 OS=Synechocystis sp. (strain PCC 6803) GN=slr1139 PE=1 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 1.480e-14
Identity = 37/101 (36.63%), Postives = 56/101 (55.45%), Query Frame = 2
Query:   23 VTDATWQSLVLDSGSPVLVEFWAPWCGPCRMIHPIIDELSKQYVGKLKCYKVNTDESPSIATRYGIRSIPTVMIFKNGEKKDTVIGAVPKSTLTTSIEKFL 325
            +TDA ++        PVLV FWA WCGPCR++ P I  ++K Y  KLK  K+  D +P+   +  +  +P + +FKN E   T  GA+ K  L   +++ L
Sbjct:    6 ITDAEFEQETQGQTKPVLVYFWASWCGPCRLMAPAIQAIAKDYGDKLKVLKLEVDPNPAAVAQCKVEGVPALRLFKNNELVMTHEGAIAKPKLLELLKEEL 106          
BLAST of CX299986 vs. ExPASy Swiss-Prot
Match: THIO2_ANASP (Thioredoxin-2 OS=Anabaena sp. (strain PCC 7120) GN=trxB PE=1 SV=3)

HSP 1 Score: 79.337 bits (194), Expect = 1.480e-14
Identity = 34/101 (33.66%), Postives = 59/101 (58.42%), Query Frame = 2
Query:   23 VTDATWQSLVLDSGSPVLVEFWAPWCGPCRMIHPIIDELSKQYVGKLKCYKVNTDESPSIATRYGIRSIPTVMIFKNGEKKDTVIGAVPKSTLTTSIEKFL 325
            +TDA ++S VL +  PVLV FWA WCGPC+++ P+I+  +  Y  +LK  K+  D +P+   +Y +  +P + + K  +  D+  G + K  L + ++  L
Sbjct:    8 ITDAEFESEVLKAEQPVLVYFWASWCGPCQLMSPLINLAANTYSDRLKVVKLEIDPNPTTVKKYKVEGVPALRLVKGEQILDSTEGVISKDKLLSFLDTHL 108          
BLAST of CX299986 vs. ExPASy Swiss-Prot
Match: THIO_CHLCV (Thioredoxin OS=Chlamydophila caviae GN=trxA PE=3 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 4.306e-14
Identity = 34/83 (40.96%), Postives = 57/83 (68.67%), Query Frame = 2
Query:   71 VLVEFWAPWCGPCRMIHPIIDELSKQYVGKLKCYKVNTDESPSIATRYGIRSIPTVMIFKNGEKKDTVIGAVPKSTLTTSIEK 319
            VL++F+A WCGPC+M+ P+++ L  + V  +   KVN D+ P+ A +YG+ SIPT+++FK+G++ D V+G   K +L   I +
Sbjct:   19 VLIDFFAEWCGPCKMLTPVLESLEAE-VSSVLIGKVNIDDHPAPAEQYGVSSIPTLILFKDGKEVDRVVGLKDKDSLIRLINQ 100          
BLAST of CX299986 vs. ExPASy Swiss-Prot
Match: TRXX_ARATH (Thioredoxin-X, chloroplastic OS=Arabidopsis thaliana GN=ATHX PE=2 SV=2)

HSP 1 Score: 76.2554 bits (186), Expect = 1.253e-13
Identity = 36/103 (34.95%), Postives = 63/103 (61.17%), Query Frame = 2
Query:   23 VTDATWQSLVLDSGSPVLVEFWAPWCGPCRMIHPIIDELSKQYVGKLKCYKVNTDESPSIATRYGIRSIPTVMIFKNGEK--KDTVIGAVPKSTLTTSIEKFL 325
            + ++ + S VL+S  PVLVEF A WCGPC++I+P ++ LS++Y  KL   K++ D +P +   + +  +P  ++FK+G++       GA+ K+ L   I+  L
Sbjct:   74 IGESEFSSTVLESAQPVLVEFVATWCGPCKLIYPAMEALSQEYGDKLTIVKIDHDANPKLIAEFKVYGLPHFILFKDGKEVPGSRREGAITKAKLKEYIDGLL 176          
BLAST of CX299986 vs. ExPASy Swiss-Prot
Match: THIO_PENCH (Thioredoxin OS=Penicillium chrysogenum GN=TRXA PE=1 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 1.636e-13
Identity = 35/91 (38.46%), Postives = 57/91 (62.64%), Query Frame = 2
Query:   17 PAVTDATWQSLVLDSGSPVLVEFWAPWCGPCRMIHPIIDELSKQYVGKLKCYKVNTDESPSIATRYGIRSIPTVMIFKNGEKKDTVIGAVP 289
            P  + A ++  V D+  PV+V+F A WCGPC+ I P +++LS+ + G ++ YKV+ DE   +A   G+ ++PT   +K GE+ + V GA P
Sbjct:    5 PIKSVAEYKEKVTDATGPVVVDFHATWCGPCKAIAPALEKLSETHTG-IQFYKVDVDELSEVAASNGVSAMPTFHFYKGGERNEEVKGANP 94          
BLAST of CX299986 vs. ExPASy Swiss-Prot
Match: THIO_COPCM (Thioredoxin OS=Coprinus comatus PE=1 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 1.636e-13
Identity = 34/91 (37.36%), Postives = 60/91 (65.93%), Query Frame = 2
Query:   56 DSGSPVLVEFWAPWCGPCRMIHPIIDELSKQY-VGKLKCYKVNTDESPSIATRYGIRSIPTVMIFKNGEKKDTVIGAVPKSTLTTSIEKFL 325
            +SG  ++++FWA WCGPCR+I PI ++ S++Y    +   KV+ D +  I+    IR++PT  ++K+G+K D ++GA P + L + ++K L
Sbjct:   16 NSGKIIIIDFWATWCGPCRVISPIFEKFSEKYGANNIVFAKVDVDTASDISEEAKIRAMPTFQVYKDGQKIDELVGANP-TALESLVQKSL 105          
BLAST of CX299986 vs. ExPASy Swiss-Prot
Match: THIO_EMENI (Thioredoxin OS=Emericella nidulans GN=TRX1 PE=1 SV=2)

HSP 1 Score: 75.485 bits (184), Expect = 2.137e-13
Identity = 34/94 (36.17%), Postives = 58/94 (61.70%), Query Frame = 2
Query:    8 HEGPAVTDATWQSLVLDSGSPVLVEFWAPWCGPCRMIHPIIDELSKQYVGKLKCYKVNTDESPSIATRYGIRSIPTVMIFKNGEKKDTVIGAVP 289
            H  P  + A +Q  VL++   V+V+ +A WCGPC+ I P +++ ++ Y      Y+++ DE   +A   GIR++PT ++FK+G+K   V+GA P
Sbjct:    6 HVPPITSKAEFQEKVLNAKGFVVVDCFATWCGPCKAIAPTVEKFAQTYTDA-SFYQIDVDELSEVAAELGIRAMPTFLLFKDGQKVSDVVGANP 98          
BLAST of CX299986 vs. ExPASy Swiss-Prot
Match: NGLY1_CAEBR (Peptide-N(4)-(N-acetyl-beta-glucosaminyl)asparagine amidase OS=Caenorhabditis briggsae GN=png-1 PE=3 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 2.791e-13
Identity = 36/84 (42.86%), Postives = 53/84 (63.10%), Query Frame = 2
Query:   56 DSGSPVLVEFWAPWCGPCRMIHPIIDELSKQYVGKLKCYKVNTDESPSIATRYGIRSIPTVMIFKNGEKKDTVIGAVPKSTLTT 307
            DS   ++V+F+A WCGPCRMI P  + LS ++ G     KVNTD +  I  RY I ++PT + FKN ++ D+V GA   + ++T
Sbjct:   20 DSNRLIIVDFFANWCGPCRMISPAFERLSMEF-GNATFLKVNTDLARDIVMRYSISAMPTFLFFKNKQQVDSVRGANESAIIST 102          
BLAST of CX299986 vs. ExPASy Swiss-Prot
Match: TRXH_CHLRE (Thioredoxin H-type OS=Chlamydomonas reinhardtii GN=TRXH PE=1 SV=3)

HSP 1 Score: 74.3294 bits (181), Expect = 4.761e-13
Identity = 31/72 (43.06%), Postives = 48/72 (66.67%), Query Frame = 2
Query:   68 PVLVEFWAPWCGPCRMIHPIIDELSKQYVGKLKCYKVNTDESPSIATRYGIRSIPTVMIFKNGEKKDTVIGA 283
            P++V+F A WCGPC+MI P+ + LS  Y GK+   KV+ D   ++A   GI ++PT  ++K+G K D ++GA
Sbjct:   27 PIVVDFTATWCGPCKMIAPLFETLSNDYAGKVIFLKVDVDAVAAVAEAAGITAMPTFHVYKDGVKADDLVGA 98          
The following BLAST results are available for this feature:
BLAST of CX299986 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 124
Match NameE-valueIdentityDescription
THIO1_SYNY35.087e-1534.69Thioredoxin-like protein slr0233 OS=Synechocystis ... [more]
THIO2_SYNY31.480e-1436.63Thioredoxin-like protein slr1139 OS=Synechocystis ... [more]
THIO2_ANASP1.480e-1433.66Thioredoxin-2 OS=Anabaena sp. (strain PCC 7120) GN... [more]
THIO_CHLCV4.306e-1440.96Thioredoxin OS=Chlamydophila caviae GN=trxA PE=3 S... [more]
TRXX_ARATH1.253e-1334.95Thioredoxin-X, chloroplastic OS=Arabidopsis thalia... [more]
THIO_PENCH1.636e-1338.46Thioredoxin OS=Penicillium chrysogenum GN=TRXA PE=... [more]
THIO_COPCM1.636e-1337.36Thioredoxin OS=Coprinus comatus PE=1 SV=1[more]
THIO_EMENI2.137e-1336.17Thioredoxin OS=Emericella nidulans GN=TRX1 PE=1 SV... [more]
NGLY1_CAEBR2.791e-1342.86Peptide-N(4)-(N-acetyl-beta-glucosaminyl)asparagin... [more]
TRXH_CHLRE4.761e-1343.06Thioredoxin H-type OS=Chlamydomonas reinhardtii GN... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionC07004G04SK SaltLeaf1 Citrus clementina cDNA clone C07004G04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX299986 ID=CX299986; Name=CX299986; organism=Citrus clementina; type=EST; length=580bp
AATTCGGCACGAGGGGCCTGCTGTGACAGATGCAACATGGCAATCACTTG
TTCTTGACTCTGGATCACCTGTGCTTGTTGAATTCTGGGCTCCATGGTGC
GGGCCTTGCCGGATGATCCACCCTATTATTGATGAGCTATCAAAGCAATA
TGTGGGGAAGCTAAAATGCTATAAGGTTAATACTGATGAGAGTCCTTCAA
TTGCTACTAGATATGGAATTAGGAGCATCCCAACTGTCATGATATTTAAG
AATGGCGAGAAGAAAGATACAGTGATTGGTGCTGTTCCTAAATCCACTTT
GACCACCAGCATAGAGAAATTCTTGTAGACATGGTAAGTAAAGGACGCGT
TTGCTAGAAACAGGCTCTCTGTAGCATTTGTTTGTTTGCCTTGTAGCTTA
CTATGCCTTGGGTTAAGATACTTTGCTTTCCACAATAAATTATCTTCTGC
CCTTGTATAGTTATGAGGAGATGTGATTGTGTTTCCTGATTCCATTACTA
AAGTTAGTTGTCTATATATTTCTAACTTCTACGAGTAATTTCAATAGAAG
TCTGCTTTTTATAAAAAAAAAAAAAAAAAA
back to top