CX300004

Overview
NameCX300004
Unique NameCX300004
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length540
Libraries
Library NameType
SaltLeaf1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CX300004_ssr95 microsatellite CX300004_ssr95:95..122. BLAST: Citrus ESTs to Prunus persica proteins V1
Ccv1_Contig9915 contig Ccv1_Contig9915:111..650. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of CX300004 vs. ExPASy Swiss-Prot
Match: SUMO1_DANRE (Small ubiquitin-related modifier 1 OS=Danio rerio GN=sumo1 PE=3 SV=1)

HSP 1 Score: 84.3445 bits (207), Expect = 3.887e-16
Identity = 42/93 (45.16%), Postives = 55/93 (59.14%), Query Frame = 2 
Query:  152 TNTPQEEDKKPNDQSAHINLKVKGQDGNEVFFRIKRSTQLKKLMNAYCDRQSVELNSIAFLFDGRRLRGEQTPDELEMEDGDEIDAMLHQTGG 430
            T T    D        +I LKV GQD +E+ F++K +T LKKL  +Y  RQ V +NS+ FLF+G+R+    TP EL MED D I+    QTGG
Sbjct:    4 TETKPSSDGGEKKDGEYIKLKVIGQDNSEIHFKVKMTTHLKKLKESYSQRQGVPVNSLRFLFEGQRITDNLTPKELGMEDEDVIEVYQEQTGG 96
[Close]
BLAST of CX300004 vs. ExPASy Swiss-Prot
Match: SMT3_YEAST (Ubiquitin-like protein SMT3 OS=Saccharomyces cerevisiae GN=SMT3 PE=1 SV=1)

HSP 1 Score: 83.5741 bits (205), Expect = 6.631e-16
Identity = 44/97 (45.36%), Postives = 64/97 (65.98%), Query Frame = 2 
Query:  143 SGVTNTPQEEDKKPNDQSAHINLKVKGQDGN-EVFFRIKRSTQLKKLMNAYCDRQSVELNSIAFLFDGRRLRGEQTPDELEMEDGDEIDAMLHQTGG 430
            S V    + E K       HINLKV   DG+ E+FF+IK++T L++LM A+  RQ  E++S+ FL+DG R++ +QTP++L+MED D I+A   Q GG
Sbjct:    4 SEVNQEAKPEVKPEVKPETHINLKVS--DGSSEIFFKIKKTTPLRRLMEAFAKRQGKEMDSLRFLYDGIRIQADQTPEDLDMEDNDIIEAHREQIGG 98
The following BLAST results are available for this feature:
BLAST of CX300004 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 42
Match NameE-valueIdentityDescription
SUMO1_DANRE3.887e-1645.16Small ubiquitin-related modifier 1 OS=Danio rerio ... [more]
SMT3_YEAST6.631e-1645.36Ubiquitin-like protein SMT3 OS=Saccharomyces cerev... [more]

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Properties
Property NameValue
Genbank descriptionC07004H11SK SaltLeaf1 Citrus clementina cDNA clone C07004H11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX300004 ID=CX300004; Name=CX300004; organism=Citrus clementina; type=EST; length=540bp
ACGCTCCCAAGGCTTTTTTAAAGGGAAAGCCCTAATCTCATCATCACAAC
ACAAACGAAGAGATCGAAAGAGCAAGAGATAGAGAGAAAGAGAAAGAGAG
AGAGAGAGAGAGAGAGAGAGAGACGAAGCAGAAGAGAGAATGTCAGGCGT
CACGAACACTCCGCAAGAGGAAGATAAGAAGCCCAACGATCAATCGGCTC
ACATCAATCTCAAAGTCAAGGGCCAGGATGGGAATGAGGTTTTCTTCAGG
ATCAAACGAAGCACCCAACTAAAGAAGCTTATGAATGCATACTGTGATAG
ACAATCTGTGGAGCTGAACTCAATTGCCTTCTTGTTTGATGGCCGCCGTC
TTCGAGGAGAGCAAACCCCTGATGAGCTGGAAATGGAAGATGGTGATGAG
ATTGATGCCATGCTGCACCAAACCGGAGGAATGCTGATGTTCTAATTATG
TAATGCTCGTTTGAGAGCTTATTAGTAGTATTAATGTAAAACTATTTATG
GATGGATGTAAGTTATGCAGAGGCTCAAGATTGTGTATTT
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