CX300006

Overview
NameCX300006
Unique NameCX300006
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length468
Libraries
Library NameType
SaltLeaf1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CX300006_ssr363 microsatellite CX300006_ssr363:363..372. BLAST: Citrus ESTs to Prunus persica proteins V1
Ccv1_Contig11787 contig Ccv1_Contig11787:49..516. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX300006 vs. ExPASy Swiss-Prot
Match: PSBP_SINAL (Oxygen-evolving enhancer protein 2, chloroplastic OS=Sinapis alba GN=PSBP PE=2 SV=2)

HSP 1 Score: 201.445 bits (511), Expect = 1.569e-51
Identity = 102/152 (67.11%), Postives = 126/152 (82.89%), Query Frame = 1
Query:   22 MASTQCFLHHHALSTTPARTS---SSQRHVSNIKPTQIVCRAQKQAVQEDDGSAVSRRLALTVLIGAAAVGSKVSPADAAYGESANVFGKPKTNTDFLPYNGDGFKLSIPSKWNPSKEREFPGQVLRYEDNFDPNSNVSVIITPTDKKSITD 468
            MA + CFLH  AL+++ AR+S   SSQR+VS  K   +VC+AQ+    E+D S VSRRLALT+L+GAAAVGSKVSPADAAYGE+ANVFGKPK NTDF  Y+GDGF++ +P+KWNPS+E E+PGQVLRYEDNFD  SN++V++TPTDKKSITD
Sbjct:    1 MAYSACFLHQSALASSTARSSPSSSSQRYVSISK---LVCKAQQ--THEEDNSTVSRRLALTLLVGAAAVGSKVSPADAAYGEAANVFGKPKKNTDFTAYSGDGFQVQVPAKWNPSREVEYPGQVLRYEDNFDATSNLNVMVTPTDKKSITD 147          
BLAST of CX300006 vs. ExPASy Swiss-Prot
Match: PSBP_NARPS (Oxygen-evolving enhancer protein 2, chloroplastic OS=Narcissus pseudonarcissus GN=PSBP PE=2 SV=1)

HSP 1 Score: 183.341 bits (464), Expect = 4.421e-46
Identity = 97/159 (61.01%), Postives = 112/159 (70.44%), Query Frame = 1
Query:   22 MASTQCFLHHHA-------LSTTPARTS---SSQRHVSNIKPTQIVCRAQKQAVQEDDGSAVSRRLALTVLIGAAAVGSKVSPADAAYGESANVFGKPKTNTDFLPYNGDGFKLSIPSKWNPSKEREFPGQVLRYEDNFDPNSNVSVIITPTDKKSITD 468
            MAST CFLHHHA       LS T + T+     Q H + ++  +  C  +  A+       +SRRLALT+LIG AA+GS+VS ADAAYGESANVFGKPKTNTDF    GDGFK+ IPSKWNPSKE EFPGQVLRYEDNFD  SNV V++ PTDKKSI D
Sbjct:    1 MASTACFLHHHAPSPATSNLSRTRSATNRDEQQQEHSARLQSPEADCATENDAL-------LSRRLALTILIGGAALGSRVSAADAAYGESANVFGKPKTNTDFQTVTGDGFKILIPSKWNPSKEVEFPGQVLRYEDNFDTTSNVGVMVNPTDKKSIKD 152          
BLAST of CX300006 vs. ExPASy Swiss-Prot
Match: PSBP_WHEAT (Oxygen-evolving enhancer protein 2, chloroplastic OS=Triticum aestivum GN=PSBP PE=2 SV=1)

HSP 1 Score: 178.333 bits (451), Expect = 1.422e-44
Identity = 95/151 (62.91%), Postives = 112/151 (74.17%), Query Frame = 1
Query:   22 MASTQCFLHHHALSTTPARTSSSQRHVSNIKPTQI-VCRAQKQAVQEDDGSAV-SRRLALTVLIGAAAVGSKVSPADAAYGESANVFGKPKTNTDFLPYNGDGFKLSIPSKWNPSKEREFPGQVLRYEDNFDPNSNVSVIITPTDKKSITD 468
            MAST CFLH      + AR ++S R    +  TQ+ VC+AQK      D + V SRR AL++L GAAA+  KVSPA AAYGE+ANVFGK K NTDF+ Y+G+GFKL IP+KWNPSKEREFPGQVLRYEDNFD  SN+SVII PT KK+ITD
Sbjct:    1 MASTSCFLHQ-----STARLAASARPAPAVGRTQLFVCKAQKNDEAASDAAVVTSRRAALSLLAGAAAIAVKVSPAAAAYGEAANVFGKAKKNTDFVAYSGEGFKLMIPAKWNPSKEREFPGQVLRYEDNFDATSNLSVIINPTTKKTITD 146          
BLAST of CX300006 vs. ExPASy Swiss-Prot
Match: PSBP_BRAJU (Oxygen-evolving enhancer protein 2, chloroplastic (Fragment) OS=Brassica juncea GN=PSBP PE=2 SV=1)

HSP 1 Score: 176.022 bits (445), Expect = 7.058e-44
Identity = 82/104 (78.85%), Postives = 95/104 (91.35%), Query Frame = 1
Query:  157 EDDGSAVSRRLALTVLIGAAAVGSKVSPADAAYGESANVFGKPKTNTDFLPYNGDGFKLSIPSKWNPSKEREFPGQVLRYEDNFDPNSNVSVIITPTDKKSITD 468
            EDD S VSRRLALT+L+GAAAVGSKVSPADAAYGE+ANVFGKPKTNTDF   NGDGF++ +P+KWNPS+E E+PGQVLRYEDNFD  SN++V++TPTDKKSITD
Sbjct:    1 EDDTSTVSRRLALTLLVGAAAVGSKVSPADAAYGEAANVFGKPKTNTDFTAINGDGFQVQVPAKWNPSREVEYPGQVLRYEDNFDATSNLNVMVTPTDKKSITD 104          
BLAST of CX300006 vs. ExPASy Swiss-Prot
Match: PSBP_CHLRE (Oxygen-evolving enhancer protein 2, chloroplastic OS=Chlamydomonas reinhardtii GN=PSBP PE=2 SV=1)

HSP 1 Score: 124.79 bits (312), Expect = 1.866e-28
Identity = 73/149 (48.99%), Postives = 92/149 (61.74%), Query Frame = 1
Query:   22 MASTQCFLHHHALSTTPARTSSSQRHVSNIKPTQIVCRAQKQAVQEDDGSAVSRRLALTVLIGAAAVGSKVSPADAAYGESANVFGKPKTNTDFLPYNGDGFKLSIPSKWNPSKEREFPGQVLRYEDNFDPNSNVSVIITPTDKKSITD 468
            MA+  C   + A +  P    +S+R       + +V RA         GS VSRR AL    GAAA+ S  SPA+AAYG+SANVFGK    + F+PY GDGF L +P+KWNPSKE +FPG +LRYEDNFD  +N+ VI   TDKK+I D
Sbjct:    1 MATALC---NKAFAAAPVARPASRR-------SAVVVRAS--------GSDVSRRAALAGFAGAAALVSS-SPANAAYGDSANVFGKVTNKSGFVPYAGDGFALLLPAKWNPSKENDFPGVILRYEDNFDAVNNLVVIAQDTDKKAIAD 130          
The following BLAST results are available for this feature:
BLAST of CX300006 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 15
Match NameE-valueIdentityDescription
PSBP_SINAL1.569e-5167.11Oxygen-evolving enhancer protein 2, chloroplastic ... [more]
PSBP_NARPS4.421e-4661.01Oxygen-evolving enhancer protein 2, chloroplastic ... [more]
PSBP_WHEAT1.422e-4462.91Oxygen-evolving enhancer protein 2, chloroplastic ... [more]
PSBP_BRAJU7.058e-4478.85Oxygen-evolving enhancer protein 2, chloroplastic ... [more]
PSBP_CHLRE1.866e-2848.99Oxygen-evolving enhancer protein 2, chloroplastic ... [more]

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Properties
Property NameValue
Genbank descriptionC07005A02SK SaltLeaf1 Citrus clementina cDNA clone C07005A02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX300006 ID=CX300006; Name=CX300006; organism=Citrus clementina; type=EST; length=468bp
GGAAGAGAGCGAAAAGAAAAAATGGCTTCAACTCAATGCTTCTTGCACCA
CCATGCACTCTCTACTACACCAGCAAGAACATCATCATCTCAGCGCCACG
TGTCGAACATCAAGCCCACCCAGATTGTCTGCCGTGCGCAGAAGCAAGCT
GTCCAAGAAGATGACGGCAGCGCCGTCTCCCGCCGTTTGGCTCTGACGGT
GCTCATTGGTGCTGCTGCCGTCGGCTCCAAGGTCTCTCCTGCCGACGCTG
CCTACGGTGAATCTGCCAATGTGTTTGGTAAGCCAAAGACCAACACTGAC
TTCTTGCCATACAATGGAGATGGATTCAAGCTGTCGATTCCCTCAAAATG
GAACCCCAGCAAAGAGAGAGAGTTCCCAGGTCAGGTTCTTAGATACGAAG
ACAACTTTGATCCCAACAGCAATGTCTCCGTCATAATCACCCCAACTGAC
AAGAAATCCATCACTGAC
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