CX300009

Overview
NameCX300009
Unique NameCX300009
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length536
Libraries
Library NameType
SaltLeaf1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig952 contig Ccv1_Contig952:1558..2093. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX300009 vs. ExPASy Swiss-Prot
Match: INO1_PHAVU (Inositol-3-phosphate synthase OS=Phaseolus vulgaris PE=2 SV=1)

HSP 1 Score: 154.451 bits (389), Expect = 3.072e-37
Identity = 74/82 (90.24%), Postives = 81/82 (98.78%), Query Frame = 2
Query:    2 IVLDLVLLAELSTRIQLKAEGEGKFHSFHPVATILSYLTKAPLVPPGTPVVNALTKQRAMLENILRACVGLAPENNMILEYK 247
            I+LDLVLLAELSTRIQ K+EGEGKFHSFHPVATILSYLTKAPLVPPGTPV+NAL+KQRAMLENI+RACVGLAPENNMI+E+K
Sbjct:  430 IILDLVLLAELSTRIQFKSEGEGKFHSFHPVATILSYLTKAPLVPPGTPVINALSKQRAMLENIMRACVGLAPENNMIMEFK 511          
BLAST of CX300009 vs. ExPASy Swiss-Prot
Match: INO1_HORVU (Inositol-3-phosphate synthase OS=Hordeum vulgare PE=2 SV=1)

HSP 1 Score: 154.451 bits (389), Expect = 3.072e-37
Identity = 77/82 (93.90%), Postives = 79/82 (96.34%), Query Frame = 2
Query:    2 IVLDLVLLAELSTRIQLKAEGEGKFHSFHPVATILSYLTKAPLVPPGTPVVNALTKQRAMLENILRACVGLAPENNMILEYK 247
            I+LDLVLLAELSTRIQLKAEGE K HSFHPVATILSYLTKAPLVPPGTPVVNAL KQRAMLENI+RACVGLAPENNMILEYK
Sbjct:  429 IILDLVLLAELSTRIQLKAEGEDKLHSFHPVATILSYLTKAPLVPPGTPVVNALAKQRAMLENIMRACVGLAPENNMILEYK 510          
BLAST of CX300009 vs. ExPASy Swiss-Prot
Match: INO1_ARATH (Inositol-3-phosphate synthase isozyme 1 OS=Arabidopsis thaliana GN=At4g39800 PE=2 SV=3)

HSP 1 Score: 154.451 bits (389), Expect = 3.072e-37
Identity = 74/82 (90.24%), Postives = 81/82 (98.78%), Query Frame = 2
Query:    2 IVLDLVLLAELSTRIQLKAEGEGKFHSFHPVATILSYLTKAPLVPPGTPVVNALTKQRAMLENILRACVGLAPENNMILEYK 247
            I+LDLVLLAELSTRIQ K+EGEGKFHSFHPVATILSYLTKAPLVPPGTPV+NAL+KQRAMLENI+RACVGLAPENNMI+E+K
Sbjct:  430 IILDLVLLAELSTRIQFKSEGEGKFHSFHPVATILSYLTKAPLVPPGTPVINALSKQRAMLENIMRACVGLAPENNMIMEFK 511          
BLAST of CX300009 vs. ExPASy Swiss-Prot
Match: INO1_BRANA (Inositol-3-phosphate synthase OS=Brassica napus PE=2 SV=2)

HSP 1 Score: 151.369 bits (381), Expect = 2.600e-36
Identity = 75/82 (91.46%), Postives = 79/82 (96.34%), Query Frame = 2
Query:    2 IVLDLVLLAELSTRIQLKAEGEGKFHSFHPVATILSYLTKAPLVPPGTPVVNALTKQRAMLENILRACVGLAPENNMILEYK 247
            I+LDLVLLAE+STRIQ K+E EGKFHSFHPVAT LSYLTKAPLVPPGTPVVNAL+KQRAMLENILRACVGLAPENNMILEYK
Sbjct:  429 IILDLVLLAEISTRIQFKSEKEGKFHSFHPVATKLSYLTKAPLVPPGTPVVNALSKQRAMLENILRACVGLAPENNMILEYK 510          
BLAST of CX300009 vs. ExPASy Swiss-Prot
Match: INO3_ARATH (Probable inositol-3-phosphate synthase isozyme 3 OS=Arabidopsis thaliana GN=At5g10170 PE=2 SV=1)

HSP 1 Score: 149.443 bits (376), Expect = 9.881e-36
Identity = 72/82 (87.80%), Postives = 79/82 (96.34%), Query Frame = 2
Query:    2 IVLDLVLLAELSTRIQLKAEGEGKFHSFHPVATILSYLTKAPLVPPGTPVVNALTKQRAMLENILRACVGLAPENNMILEYK 247
            I+LDLVLLAEL+TRIQ  +E EGKFHSFHPVAT+LSYL+KAPLVPPGTPVVNAL+KQRAMLEN+LRACVGLAPENNMILEYK
Sbjct:  429 IILDLVLLAELTTRIQFMSENEGKFHSFHPVATLLSYLSKAPLVPPGTPVVNALSKQRAMLENVLRACVGLAPENNMILEYK 510          
BLAST of CX300009 vs. ExPASy Swiss-Prot
Match: INO1_DICDI (Inositol-3-phosphate synthase OS=Dictyostelium discoideum GN=ino1 PE=3 SV=1)

HSP 1 Score: 104.375 bits (259), Expect = 3.645e-22
Identity = 48/82 (58.54%), Postives = 67/82 (81.71%), Query Frame = 2
Query:    2 IVLDLVLLAELSTRIQLKAEGEGKFHSFHPVATILSYLTKAPLVPPGTPVVNALTKQRAMLENILRACVGLAPENNMILEYK 247
            I+LDLV+LAE+++RI +K + + +F +FHPV ++LSYL KAP+VP    VVNAL KQRA +ENI +ACVG+AP+NNM+LE +
Sbjct:  429 IILDLVILAEVTSRITMKKQDDDQFATFHPVLSLLSYLLKAPIVPKHATVVNALFKQRACIENIFKACVGIAPDNNMLLEQR 510          
BLAST of CX300009 vs. ExPASy Swiss-Prot
Match: INO1A_XENLA (Inositol-3-phosphate synthase 1-A OS=Xenopus laevis GN=isyna1-A PE=2 SV=1)

HSP 1 Score: 103.605 bits (257), Expect = 6.218e-22
Identity = 49/82 (59.76%), Postives = 65/82 (79.27%), Query Frame = 2
Query:    2 IVLDLVLLAELSTRIQLKAEGEGKFHSFHPVATILSYLTKAPLVPPGTPVVNALTKQRAMLENILRACVGLAPENNMILEYK 247
            I+LDLVLL EL  RI  + E + +F +FH V +ILS+L KAPLVP GTPV+NA  +QR  +ENILRAC+GL+P+N+M+LE+K
Sbjct:  423 IILDLVLLTELCQRITFRTETDQEFQTFHSVLSILSFLCKAPLVPAGTPVINAFFRQRNCIENILRACLGLSPQNHMMLEHK 504          
BLAST of CX300009 vs. ExPASy Swiss-Prot
Match: INO1_RAT (Inositol-3-phosphate synthase 1 OS=Rattus norvegicus GN=Isyna1 PE=2 SV=2)

HSP 1 Score: 102.449 bits (254), Expect = 1.385e-21
Identity = 48/82 (58.54%), Postives = 64/82 (78.05%), Query Frame = 2
Query:    2 IVLDLVLLAELSTRIQLKAEGEGKFHSFHPVATILSYLTKAPLVPPGTPVVNALTKQRAMLENILRACVGLAPENNMILEYK 247
            I+LDLVLL EL  R+    + + +   FHPV ++LS+L KAPLVPPG+PVVNAL +QR+ +ENI RACVGL P+N+M+LE+K
Sbjct:  426 IMLDLVLLTELCQRVSFCTDSDPEPQGFHPVLSVLSFLFKAPLVPPGSPVVNALFRQRSCIENIFRACVGLPPQNHMLLEHK 507          
BLAST of CX300009 vs. ExPASy Swiss-Prot
Match: INO1B_XENLA (Inositol-3-phosphate synthase 1-B OS=Xenopus laevis GN=isyna1-B PE=2 SV=2)

HSP 1 Score: 102.449 bits (254), Expect = 1.385e-21
Identity = 50/82 (60.98%), Postives = 64/82 (78.05%), Query Frame = 2
Query:    2 IVLDLVLLAELSTRIQLKAEGEGKFHSFHPVATILSYLTKAPLVPPGTPVVNALTKQRAMLENILRACVGLAPENNMILEYK 247
            I LDLVLL EL  RI  + E + +F +FH V +ILS+L KAPLVP GTPVVNA  +QR  +ENILRAC+GL+P+N+M+LE+K
Sbjct:  423 IFLDLVLLTELCQRITFRTETDQEFQTFHSVLSILSFLCKAPLVPAGTPVVNAFFRQRNCIENILRACLGLSPQNHMMLEHK 504          
BLAST of CX300009 vs. ExPASy Swiss-Prot
Match: INO1_MACFA (Inositol-3-phosphate synthase 1 OS=Macaca fascicularis GN=ISYNA1 PE=2 SV=1)

HSP 1 Score: 101.293 bits (251), Expect = 3.086e-21
Identity = 47/82 (57.32%), Postives = 65/82 (79.27%), Query Frame = 2
Query:    2 IVLDLVLLAELSTRIQLKAEGEGKFHSFHPVATILSYLTKAPLVPPGTPVVNALTKQRAMLENILRACVGLAPENNMILEYK 247
            I+LDL LL EL  R+    + + +  +FHPV ++LS+L KAPLVPPG+PVVNAL +QR+ +ENILRAC+GL P+N+M+LE+K
Sbjct:  426 IMLDLALLTELCQRVSFCTDADPEPQTFHPVLSLLSFLFKAPLVPPGSPVVNALFRQRSCIENILRACLGLPPQNHMLLEHK 507          
The following BLAST results are available for this feature:
BLAST of CX300009 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 26
Match NameE-valueIdentityDescription
INO1_PHAVU3.072e-3790.24Inositol-3-phosphate synthase OS=Phaseolus vulgari... [more]
INO1_HORVU3.072e-3793.90Inositol-3-phosphate synthase OS=Hordeum vulgare P... [more]
INO1_ARATH3.072e-3790.24Inositol-3-phosphate synthase isozyme 1 OS=Arabido... [more]
INO1_BRANA2.600e-3691.46Inositol-3-phosphate synthase OS=Brassica napus PE... [more]
INO3_ARATH9.881e-3687.80Probable inositol-3-phosphate synthase isozyme 3 O... [more]
INO1_DICDI3.645e-2258.54Inositol-3-phosphate synthase OS=Dictyostelium dis... [more]
INO1A_XENLA6.218e-2259.76Inositol-3-phosphate synthase 1-A OS=Xenopus laevi... [more]
INO1_RAT1.385e-2158.54Inositol-3-phosphate synthase 1 OS=Rattus norvegic... [more]
INO1B_XENLA1.385e-2160.98Inositol-3-phosphate synthase 1-B OS=Xenopus laevi... [more]
INO1_MACFA3.086e-2157.32Inositol-3-phosphate synthase 1 OS=Macaca fascicul... [more]

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Properties
Property NameValue
Genbank descriptionC07005A05SK SaltLeaf1 Citrus clementina cDNA clone C07005A05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX300009 ID=CX300009; Name=CX300009; organism=Citrus clementina; type=EST; length=536bp
AATCGTTCTAGATTTGGTTCTGCTGGCTGAACTCAGCACCAGGATCCAGC
TCAAAGCTGAAGGAGAGGGCAAATTCCACTCTTTCCACCCTGTGGCTACA
ATTCTCAGCTACCTCACCAAGGCTCCTCTGGTCCCTCCAGGCACACCAGT
GGTGAATGCGCTGACGAAGCAGCGTGCAATGCTTGAGAACATTCTGAGGG
CTTGCGTTGGCTTGGCTCCTGAGAACAACATGATTTTGGAATACAAGTGA
AGAACTTGCAGGGGAGAAAAGTGGAAGAACCGGTTTTCCCTTTCTCTGTC
ACCAATCAAAGCTGTGGTGGTCCATTTAATTACTGATTGTAATGTCTTGT
GTCATGAAATTGTGGTTAATATTAGTGTGTCCTGTATGTTTGCTCTTTTA
TTTTTTTAATGAAGGTGCTGGAGTGTAGCCCATTGCCTTTGTAGCTCATT
TCGGAGCATGAAATCTCTTGTATTGCAAGTAGATAATATATTGAAGTTCA
TAAATAACTGTATTGCGGCAAAAAAAAAAAAAAAAA
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