CX300009

Overview
NameCX300009
Unique NameCX300009
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length536
Libraries
Library NameType
SaltLeaf1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX300009 vs. ExPASy Swiss-Prot
Match: INO1_HUMAN (Inositol-3-phosphate synthase 1 OS=Homo sapiens GN=ISYNA1 PE=1 SV=1)

HSP 1 Score: 101.293 bits (251), Expect = 3.086e-21
Identity = 48/82 (58.54%), Postives = 65/82 (79.27%), Query Frame = 2
Query:    2 IVLDLVLLAELSTRIQLKAEGEGKFHSFHPVATILSYLTKAPLVPPGTPVVNALTKQRAMLENILRACVGLAPENNMILEYK 247
            I+LDL LL EL  R+    + + +  +FHPV ++LS+L KAPLVPPG+PVVNAL +QR+ +ENILRACVGL P+N+M+LE+K
Sbjct:  426 IMLDLALLTELCQRVSFCTDMDPEPQTFHPVLSLLSFLFKAPLVPPGSPVVNALFRQRSCIENILRACVGLPPQNHMLLEHK 507          
BLAST of CX300009 vs. ExPASy Swiss-Prot
Match: INO1_MOUSE (Inositol-3-phosphate synthase 1 OS=Mus musculus GN=Isyna1 PE=2 SV=1)

HSP 1 Score: 98.9821 bits (245), Expect = 1.531e-20
Identity = 47/82 (57.32%), Postives = 63/82 (76.83%), Query Frame = 2
Query:    2 IVLDLVLLAELSTRIQLKAEGEGKFHSFHPVATILSYLTKAPLVPPGTPVVNALTKQRAMLENILRACVGLAPENNMILEYK 247
            I+LDLVLL EL  R+    + + +   FH V ++LS+L KAPLVPPG+PVVNAL +QR+ +ENI RACVGL P+N+M+LE+K
Sbjct:  426 IMLDLVLLTELCQRVSFCTDSDPEPQGFHTVLSLLSFLFKAPLVPPGSPVVNALFRQRSCIENIFRACVGLPPQNHMLLEHK 507          
BLAST of CX300009 vs. ExPASy Swiss-Prot
Match: INO1_BOVIN (Inositol-3-phosphate synthase 1 OS=Bos taurus GN=ISYNA1 PE=2 SV=1)

HSP 1 Score: 98.5969 bits (244), Expect = 2.000e-20
Identity = 47/82 (57.32%), Postives = 62/82 (75.61%), Query Frame = 2
Query:    2 IVLDLVLLAELSTRIQLKAEGEGKFHSFHPVATILSYLTKAPLVPPGTPVVNALTKQRAMLENILRACVGLAPENNMILEYK 247
            I+LDL LL EL  R+    + +    SFHPV ++L +L KAPL PPG+PVVNAL +QR+ +ENILRACVGL P+N+M+LE+K
Sbjct:  426 IMLDLALLTELCQRVSFCTDVDPDPQSFHPVLSLLGFLFKAPLAPPGSPVVNALFRQRSCIENILRACVGLPPQNHMLLEHK 507          
BLAST of CX300009 vs. ExPASy Swiss-Prot
Match: INO1_DROME (Inositol-3-phosphate synthase OS=Drosophila melanogaster GN=Inos PE=1 SV=1)

HSP 1 Score: 90.1225 bits (222), Expect = 7.114e-18
Identity = 49/84 (58.33%), Postives = 64/84 (76.19%), Query Frame = 2
Query:    2 IVLDLVLLAELSTRIQLK-AEGEGK-FHSFHPVATILSYLTKAPLVPPGTPVVNALTKQRAMLENILRACVGLAPENNMILEYK 247
            ++LDLV+L ELSTRIQL+ AE E   +  F PV ++LSYL KAPLVP G+ VVN+L +QRA +ENILR C+GL P ++M LE +
Sbjct:  430 LILDLVILGELSTRIQLRNAEKESAPWVPFKPVLSLLSYLCKAPLVPQGSQVVNSLFRQRAAIENILRGCIGLPPISHMTLEQR 513          
BLAST of CX300009 vs. ExPASy Swiss-Prot
Match: INO1_YEAST (Inositol-3-phosphate synthase OS=Saccharomyces cerevisiae GN=INO1 PE=1 SV=3)

HSP 1 Score: 73.559 bits (179), Expect = 6.890e-13
Identity = 38/85 (44.71%), Postives = 50/85 (58.82%), Query Frame = 2
Query:    2 IVLDLVLLAELSTRIQLKA-----EGEGKFHSFHPVATILSYLTKAPLVPPGTPVVNALTKQRAMLENILRACVGLAPENNMILE 241
            +++DL+++ E  TR+  K      E  GKF +F+PV T LSY  KAPL  PG   VN L KQR  LEN LR  +GL  +N +  E
Sbjct:  445 LIIDLLVMTEFCTRVSYKKVDPVKEDAGKFENFYPVLTFLSYWLKAPLTRPGFHPVNGLNKQRTALENFLRLLIGLPSQNELRFE 529          
BLAST of CX300009 vs. ExPASy Swiss-Prot
Match: INO1_CANAL (Inositol-3-phosphate synthase OS=Candida albicans GN=INO1 PE=1 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 1.175e-12
Identity = 34/80 (42.50%), Postives = 50/80 (62.50%), Query Frame = 2
Query:    2 IVLDLVLLAELSTRIQLKAEGEGKFHSFHPVATILSYLTKAPLVPPGTPVVNALTKQRAMLENILRACVGLAPENNMILE 241
            +++DLV+  E +TR+Q+K  G+  +   +PVA++LSY  KAPL  PG   +N L KQR  L N+L   VGL  +N +  E
Sbjct:  437 LIIDLVVATEFATRVQVKGPGKSDYDELYPVASLLSYWLKAPLARPGFKPINGLNKQRQQLVNLLSVLVGLPIDNELRFE 516          
The following BLAST results are available for this feature:
BLAST of CX300009 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 26
Match NameE-valueIdentityDescription
INO1_HUMAN3.086e-2158.54Inositol-3-phosphate synthase 1 OS=Homo sapiens GN... [more]
INO1_MOUSE1.531e-2057.32Inositol-3-phosphate synthase 1 OS=Mus musculus GN... [more]
INO1_BOVIN2.000e-2057.32Inositol-3-phosphate synthase 1 OS=Bos taurus GN=I... [more]
INO1_DROME7.114e-1858.33Inositol-3-phosphate synthase OS=Drosophila melano... [more]
INO1_YEAST6.890e-1344.71Inositol-3-phosphate synthase OS=Saccharomyces cer... [more]
INO1_CANAL1.175e-1242.50Inositol-3-phosphate synthase OS=Candida albicans ... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionC07005A05SK SaltLeaf1 Citrus clementina cDNA clone C07005A05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX300009 ID=CX300009; Name=CX300009; organism=Citrus clementina; type=EST; length=536bp
AATCGTTCTAGATTTGGTTCTGCTGGCTGAACTCAGCACCAGGATCCAGC
TCAAAGCTGAAGGAGAGGGCAAATTCCACTCTTTCCACCCTGTGGCTACA
ATTCTCAGCTACCTCACCAAGGCTCCTCTGGTCCCTCCAGGCACACCAGT
GGTGAATGCGCTGACGAAGCAGCGTGCAATGCTTGAGAACATTCTGAGGG
CTTGCGTTGGCTTGGCTCCTGAGAACAACATGATTTTGGAATACAAGTGA
AGAACTTGCAGGGGAGAAAAGTGGAAGAACCGGTTTTCCCTTTCTCTGTC
ACCAATCAAAGCTGTGGTGGTCCATTTAATTACTGATTGTAATGTCTTGT
GTCATGAAATTGTGGTTAATATTAGTGTGTCCTGTATGTTTGCTCTTTTA
TTTTTTTAATGAAGGTGCTGGAGTGTAGCCCATTGCCTTTGTAGCTCATT
TCGGAGCATGAAATCTCTTGTATTGCAAGTAGATAATATATTGAAGTTCA
TAAATAACTGTATTGCGGCAAAAAAAAAAAAAAAAA
back to top