CX300035

Overview
NameCX300035
Unique NameCX300035
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length377
Libraries
Library NameType
SaltLeaf1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig12351 contig Ccv1_Contig12351:916..1292. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX300035 vs. ExPASy Swiss-Prot
Match: LCYE_ARATH (Lycopene epsilon cyclase, chloroplastic OS=Arabidopsis thaliana GN=LUT2 PE=1 SV=2)

HSP 1 Score: 87.0409 bits (214), Expect = 3.187e-17
Identity = 42/103 (40.78%), Postives = 66/103 (64.08%), Query Frame = 2
Query:   68 QVAYGILAEVEEHPFDLDKMVFMDWRDSHLNNNSELKEANSKIPTFLYAMPFSSNRIFLEETSLVARPGVPMKDIQERMVARLKHLGIKVRSIEEDEHCVIPM 376
            Q AYG+  EVE  P+D D+MVFMD+RD     N +++   ++ PTFLYAMP + +R+F EET L ++  +P   ++ +++ RL  LGI++    E+E   IP+
Sbjct:  264 QTAYGVEVEVENSPYDPDQMVFMDYRDY---TNEKVRSLEAEYPTFLYAMPMTKSRLFFEETCLASKDVMPFDLLKTKLMLRLDTLGIRILKTYEEEWSYIPV 363          
BLAST of CX300035 vs. ExPASy Swiss-Prot
Match: Y801_DEIRA (Uncharacterized carotenoid cyclase DR_0801 OS=Deinococcus radiodurans GN=DR_0801 PE=3 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 1.810e-12
Identity = 44/125 (35.20%), Postives = 62/125 (49.60%), Query Frame = 2
Query:    2 VLDATGFSRCLVQYDKPYNPGYQVAYGILAEVEEHPFDLDKMVFMDWRDSHLNNNSELKEANSKIPTFLYAMPFSSNRIFLEETSLVARPGVPMKDIQERMVARLKHLGIKVRSIEEDEHCVIPM 376
            V+DA+G    +     P     Q AYG++A     P     MV+MD+R        ELK   +   TFLYAM    +R F+EETSL+ARP     +++ R++ARL   G    + E +E    PM
Sbjct:  136 VVDASGHGALVSPVRFPGGAALQTAYGVVARFRRPPVTPGSMVWMDYRTPA----PELKRGEA---TFLYAMHLGGDRYFVEETSLIARPAPTRAELRRRLLARLSAQGTPPHATESEEWVAFPM 253          
The following BLAST results are available for this feature:
BLAST of CX300035 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 12
Match NameE-valueIdentityDescription
LCYE_ARATH3.187e-1740.78Lycopene epsilon cyclase, chloroplastic OS=Arabido... [more]
Y801_DEIRA1.810e-1235.20Uncharacterized carotenoid cyclase DR_0801 OS=Dein... [more]

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Properties
Property NameValue
Genbank descriptionC07005C11SK SaltLeaf1 Citrus clementina cDNA clone C07005C11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX300035 ID=CX300035; Name=CX300035; organism=Citrus clementina; type=EST; length=377bp
GGTTCTTGATGCTACGGGATTCTCTAGGTGTCTTGTGCAGTATGATAAAC
CCTATAATCCAGGTTACCAAGTGGCATATGGAATACTAGCTGAGGTAGAA
GAGCACCCGTTTGATTTAGACAAGATGGTTTTCATGGATTGGAGAGATTC
GCATCTGAACAACAATTCGGAGCTCAAAGAGGCAAATAGCAAAATTCCTA
CTTTTCTTTATGCCATGCCCTTTTCGTCAAACAGGATATTTCTTGAAGAG
ACTTCGCTAGTGGCGCGGCCTGGAGTGCCAATGAAAGATATCCAGGAAAG
AATGGTGGCTAGATTAAAGCACTTAGGCATAAAAGTTAGAAGCATTGAAG
AGGATGAGCATTGTGTCATTCCGATGG
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