CX300037

Overview
NameCX300037
Unique NameCX300037
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length555
Libraries
Library NameType
SaltLeaf1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX300037 vs. ExPASy Swiss-Prot
Match: G3PC_PEA (Glyceraldehyde-3-phosphate dehydrogenase, cytosolic OS=Pisum sativum GN=GAPC1 PE=2 SV=1)

HSP 1 Score: 78.5666 bits (192), Expect = 2.288e-14
Identity = 43/128 (33.59%), Postives = 62/128 (48.44%), Query Frame = 3
Query:    9 RAAALNIVPTSTXXXXXXXXXXXXXXXXXNGIALRVPTPNXXXXXXXXXXSKKTFAEEVNAAFRESADNELKGILSVCDEPLVSVDFRCXXXXXXXXXXXXXXMGDDMVKVIAWYDNEWGYSQRVVDL 392
            RAA+ NI+P+ST                  G++ RVPT +           K    +E+ AA +E ++ +LKGIL   ++ +VS DF                + D  VK+++WYDNE GYS RVVDL
Sbjct:  203 RAASFNIIPSSTGAAKAVGKVLPALNGKLTGMSFRVPTVDVSVVDLTVRLEKAATYDEIKAAIKEESEGKLKGILGYTEDDVVSTDFIGDTRSSIFDAKAGIALNDKFVKLVSWYDNELGYSTRVVDL 330          
BLAST of CX300037 vs. ExPASy Swiss-Prot
Match: G3P1_RHIRA (Glyceraldehyde-3-phosphate dehydrogenase 1 OS=Rhizomucor racemosus GN=GPD1 PE=2 SV=1)

HSP 1 Score: 78.5666 bits (192), Expect = 2.288e-14
Identity = 44/128 (34.38%), Postives = 62/128 (48.44%), Query Frame = 3
Query:    9 RAAALNIVPTSTXXXXXXXXXXXXXXXXXNGIALRVPTPNXXXXXXXXXXSKKTFAEEVNAAFRESADNELKGILSVCDEPLVSVDFRCXXXXXXXXXXXXXXMGDDMVKVIAWYDNEWGYSQRVVDL 392
            RAAA NI+P+ST                  G+A RVPTP+          SK    +E+  A +++++  +KG+L    + +VS DF                +    VK+IAWYDNE+GYS RVVDL
Sbjct:  199 RAAAANIIPSSTGAAKAVGKVIPALNGKLTGMAFRVPTPDVSVVDLTVNLSKGASYDEIKQAIKKASETTMKGVLGYTSDAVVSSDFVGEVCSSVFDAAAGIQLTPTFVKLIAWYDNEYGYSNRVVDL 326          
BLAST of CX300037 vs. ExPASy Swiss-Prot
Match: G3P_STRAU (Glyceraldehyde-3-phosphate dehydrogenase OS=Streptomyces aureofaciens GN=gap PE=3 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 2.988e-14
Identity = 46/135 (34.07%), Postives = 65/135 (48.15%), Query Frame = 3
Query:    3 RARAAALNIVPTSTXXXXXXXXXXXXXXXXXNGIALRVPTPNXXXXXXXXXXSKKTFAEEVNAAFRESADNELKGILSVCDEPLVSVDFRCXXXXXXXXXXXXXXMGDDMVKVIAWYDNEWGYSQRVVDLADIVA 407
            RARAAA+NIVPT+T                 +G ++RVP P           ++    +EV  A+R +A   L G+L   ++PLVS D                  G   +KV+AWYDNEWG+S RV+D   ++A
Sbjct:  197 RARAAAVNIVPTTTGAAKAIGLVLPNLDGKLSGDSIRVPVPVGSIVELNTTVARDVTRDEVLDAYRAAAQGPLAGVLEYSEDPLVSSDITGNPASSIFDSELTRVDGRH-IKVVAWYDNEWGFSNRVIDTLQLLA 330          
BLAST of CX300037 vs. ExPASy Swiss-Prot
Match: G3P_SCHCO (Glyceraldehyde-3-phosphate dehydrogenase OS=Schizophyllum commune GN=GPD PE=3 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 2.988e-14
Identity = 44/128 (34.38%), Postives = 60/128 (46.88%), Query Frame = 3
Query:    9 RAAALNIVPTSTXXXXXXXXXXXXXXXXXNGIALRVPTPNXXXXXXXXXXSKKTFAEEVNAAFRESADNELKGILSVCDEPLVSVDFRCXXXXXXXXXXXXXXMGDDMVKVIAWYDNEWGYSQRVVDL 392
            R+   NI+P+ST                  G+A RVPT +           K+   +E+ A  +E+++  LKGIL   DE +VS DF                +    VK+IAWYDNEWGYS+RV DL
Sbjct:  199 RSVNNNIIPSSTGAAKAVGKVIPSLNGRLTGLAFRVPTLDVSVVDLVVRLEKEASYDEIVATVKEASEGPLKGILGFTDESVVSTDFTGANESSIFDSKAGIAISKSFVKLIAWYDNEWGYSRRVCDL 326          
BLAST of CX300037 vs. ExPASy Swiss-Prot
Match: G3P_ONCVO (Glyceraldehyde 3-phosphate-dehydrogenase OS=Onchocerca volvulus PE=2 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 2.988e-14
Identity = 45/128 (35.16%), Postives = 60/128 (46.88%), Query Frame = 3
Query:    9 RAAALNIVPTSTXXXXXXXXXXXXXXXXXNGIALRVPTPNXXXXXXXXXXSKKTFAEEVNAAFRESADNELKGILSVCDEPLVSVDFRCXXXXXXXXXXXXXXMGDDMVKVIAWYDNEWGYSQRVVDL 392
            R A  NI+P ST                  G+A RVPTP+           K    +E+ AA +E+A   +KGIL   ++ +VS DF                +  + VK+IAWYDNE+GYS RVVDL
Sbjct:  205 RGAGQNIIPASTGAAKAVGKVIPDLNGKLTGMASRVPTPDVSVVDLTCRLQKGASMDEIKAAVKEAAAGPMKGILEYTEDQVVSSDFVGDPHSSIFDALACISLNPNFVKLIAWYDNEYGYSNRVVDL 332          
BLAST of CX300037 vs. ExPASy Swiss-Prot
Match: G3P_HALVA (Glyceraldehyde-3-phosphate dehydrogenase OS=Haloarcula vallismortis GN=gap PE=3 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 2.988e-14
Identity = 44/134 (32.84%), Postives = 65/134 (48.51%), Query Frame = 3
Query:    3 RARAAALNIVPTSTXXXXXXXXXXXXXXXXXNGIALRVPTPNXXXXXXXXXXSKKTFAEEVNAAFRESADNELKGILSVCDEPLVSVDFRCXXXXXXXXXXXXXXMGDDMVKVIAWYDNEWGYSQRVVDLADIV 404
            R RAAA NI+PTST                 +G+A+RVP PN                 +VNAAF ++A  EL+G+L V  + +VS D                 +   M K++ WYDNE+G+S R++D+A+ +
Sbjct:  201 RRRAAAENIIPTSTGAAQAATEVLPELEGKLDGMAIRVPVPNGSITEFVVDLDDDVTESDVNAAFEDAAAGELEGVLGVTSDDVVSSDI-LGDPYSTQVDLQSTNVVSGMTKILTWYDNEYGFSNRMLDVAEYI 333          
BLAST of CX300037 vs. ExPASy Swiss-Prot
Match: G3P_CURLU (Glyceraldehyde-3-phosphate dehydrogenase OS=Curvularia lunata GN=GPD PE=3 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 2.988e-14
Identity = 41/133 (30.83%), Postives = 63/133 (47.37%), Query Frame = 3
Query:    9 RAAALNIVPTSTXXXXXXXXXXXXXXXXXNGIALRVPTPNXXXXXXXXXXSKKTFAEEVNAAFRESADNELKGILSVCDEPLVSVDFRCXXXXXXXXXXXXXXMGDDMVKVIAWYDNEWGYSQRVVDLADIVA 407
            R AA NI+P+ST                  G+A+RVPT N           K    +E+  A +E+++  L GIL   ++ +V+ D                 +  + VK+++WYDNEWGYS+RV+DL   +A
Sbjct:  199 RTAAQNIIPSSTGAAKAVGKVIPELNGKLTGMAMRVPTANVSVVDLTVRIEKGASYDEIKQAVKEASEGPLSGILGYTEDDIVTTDLNGDNRSSIFDAKAGISLNKNFVKLVSWYDNEWGYSRRVLDLLVYIA 331          
BLAST of CX300037 vs. ExPASy Swiss-Prot
Match: G3P_COLGL (Glyceraldehyde-3-phosphate dehydrogenase OS=Colletotrichum gloeosporioides GN=GPDA PE=2 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 2.988e-14
Identity = 42/133 (31.58%), Postives = 65/133 (48.87%), Query Frame = 3
Query:    9 RAAALNIVPTSTXXXXXXXXXXXXXXXXXNGIALRVPTPNXXXXXXXXXXSKKTFAEEVNAAFRESADNELKGILSVCDEPLVSVDFRCXXXXXXXXXXXXXXMGDDMVKVIAWYDNEWGYSQRVVDLADIVA 407
            R AA NI+P+ST                   +++RVPT N           K    +E+  A +E+A+  LKG+L+  ++ +VS D                 + ++ VK+++WYDNEWGYS+RV+DL   VA
Sbjct:  200 RTAAQNIIPSSTGAAKAVGKVIPELNGKLTDMSMRVPTTNVSVVDLTARIEKGASYDEIKQAIKEAAEGPLKGVLAYTEDDVVSTDMIGNPNSSIFDAKAGISLNNNFVKLVSWYDNEWGYSRRVLDLLAHVA 332          
BLAST of CX300037 vs. ExPASy Swiss-Prot
Match: G3PC_GRAVE (Glyceraldehyde-3-phosphate dehydrogenase, cytosolic OS=Gracilaria verrucosa GN=GAPC PE=3 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 2.988e-14
Identity = 43/133 (32.33%), Postives = 62/133 (46.62%), Query Frame = 3
Query:    9 RAAALNIVPTSTXXXXXXXXXXXXXXXXXNGIALRVPTPNXXXXXXXXXXSKKTFAEEVNAAFRESADNELKGILSVCDEPLVSVDFRCXXXXXXXXXXXXXXMGDDMVKVIAWYDNEWGYSQRVVDLADIVA 407
            R A  NI+P+ST                  G+A RVPT +          + +T  +++ A  + +A++ +KGIL   +E +VS DF                +     K++AWYDNEWGYS RVVDL   VA
Sbjct:  200 RGAGANIIPSSTGAAKAVGKVLPELNGKLTGMAFRVPTSDVSVVDLTVRLATETSYDDIKATMKAAAEDSMKGILKYTEEAVVSTDFIHEEASCVFDAGAGIMLNSRFCKLVAWYDNEWGYSNRVVDLIAHVA 332          
BLAST of CX300037 vs. ExPASy Swiss-Prot
Match: G3P2_TRIKO (Glyceraldehyde-3-phosphate dehydrogenase 2 OS=Trichoderma koningii GN=gpd2 PE=1 SV=3)

HSP 1 Score: 78.1814 bits (191), Expect = 2.988e-14
Identity = 43/133 (32.33%), Postives = 63/133 (47.37%), Query Frame = 3
Query:    9 RAAALNIVPTSTXXXXXXXXXXXXXXXXXNGIALRVPTPNXXXXXXXXXXSKKTFAEEVNAAFRESADNELKGILSVCDEPLVSVDFRCXXXXXXXXXXXXXXMGDDMVKVIAWYDNEWGYSQRVVDLADIVA 407
            R AA NI+P+ST                  G+++RVPT N           K    EE+    +++AD  LKG+L+   + +VS D                 +  + VK+++WYDNEWGYS+RV+DL   VA
Sbjct:  200 RGAAQNIIPSSTGAAKAVGKVIPALNGKLTGMSIRVPTANVSVVDLTVRIEKGASYEEITETIKKAADGPLKGVLAYTGDDVVSSDMLGNTNSSIFDIKAGISLNKNFVKLVSWYDNEWGYSRRVLDLLAHVA 332          
The following BLAST results are available for this feature:
BLAST of CX300037 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 270
Match NameE-valueIdentityDescription
G3PC_PEA2.288e-1433.59Glyceraldehyde-3-phosphate dehydrogenase, cytosoli... [more]
G3P1_RHIRA2.288e-1434.38Glyceraldehyde-3-phosphate dehydrogenase 1 OS=Rhiz... [more]
G3P_STRAU2.988e-1434.07Glyceraldehyde-3-phosphate dehydrogenase OS=Strept... [more]
G3P_SCHCO2.988e-1434.38Glyceraldehyde-3-phosphate dehydrogenase OS=Schizo... [more]
G3P_ONCVO2.988e-1435.16Glyceraldehyde 3-phosphate-dehydrogenase OS=Onchoc... [more]
G3P_HALVA2.988e-1432.84Glyceraldehyde-3-phosphate dehydrogenase OS=Haloar... [more]
G3P_CURLU2.988e-1430.83Glyceraldehyde-3-phosphate dehydrogenase OS=Curvul... [more]
G3P_COLGL2.988e-1431.58Glyceraldehyde-3-phosphate dehydrogenase OS=Collet... [more]
G3PC_GRAVE2.988e-1432.33Glyceraldehyde-3-phosphate dehydrogenase, cytosoli... [more]
G3P2_TRIKO2.988e-1432.33Glyceraldehyde-3-phosphate dehydrogenase 2 OS=Tric... [more]

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Properties
Property NameValue
Genbank descriptionC07005D01SK SaltLeaf1 Citrus clementina cDNA clone C07005D01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX300037 ID=CX300037; Name=CX300037; organism=Citrus clementina; type=EST; length=555bp
GGCGTGCAAGAGCAGCTGCACTCAACATTGTCCCAACATCAACTGGTGCG
GCAAAAGCTGTGGCCCTTGTCCTCCCAGCACTCAAAGGCAAACTAAACGG
CATTGCCCTTCGTGTGCCAACACCAAACGTCTCGGTTGTTGATCTTGTCG
TTCAGGTGTCGAAGAAAACCTTCGCAGAAGAGGTGAACGCCGCTTTCAGA
GAAAGCGCTGACAATGAACTGAAAGGGATCCTCTCCGTGTGCGACGAGCC
CCTCGTTTCGGTCGACTTCAGGTGCTCTGATGTATCCTCAACCGTTGATT
CATCTCTCACACTTGTCATGGGAGACGACATGGTTAAGGTGATTGCATGG
TATGACAATGAATGGGGTTACTCTCAAAGGGTTGTGGATTTGGCCGACAT
TGTTGCCAACAACTGGAAGTGAAGTAAATACTAAAATCGGAACTCGGCTG
TAATCGGCACAACGATGTTCTTGTTTTTCATTTTTGGTTCCCCCATTTAT
TGTTCTGCGTCTTAAAATTTGTAGAATGTATAACACTATCTTATTATGGA
ACCTT
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