CX300037

Overview
NameCX300037
Unique NameCX300037
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length555
Libraries
Library NameType
SaltLeaf1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX300037 vs. ExPASy Swiss-Prot
Match: G3P_ASPOR (Glyceraldehyde-3-phosphate dehydrogenase OS=Aspergillus oryzae GN=gpdA PE=2 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 4.314e-13
Identity = 41/129 (31.78%), Postives = 60/129 (46.51%), Query Frame = 3
Query:    9 RAAALNIVPTSTXXXXXXXXXXXXXXXXXNGIALRVPTPNXXXXXXXXXXSKKTFAEEVNAAFRE-SADNELKGILSVCDEPLVSVDFRCXXXXXXXXXXXXXXMGDDMVKVIAWYDNEWGYSQRVVDL 392
            R AA NI+P+ST                  G+++RVPT N           K    E++    +  S + ELKGIL   ++ +VS D                 + +  +K+++WYDNEWGYS+RVVDL
Sbjct:  200 RTAAQNIIPSSTGAAKAVGKVIPSLNGKLTGMSMRVPTANVSVVDLTCRTEKAVTYEDIKKTIKAASEEGELKGILGYTEDDIVSTDLIGDAHSSIFDAKAGIALNEHFIKLVSWYDNEWGYSRRVVDL 328          
BLAST of CX300037 vs. ExPASy Swiss-Prot
Match: G3P_HUMAN (Glyceraldehyde-3-phosphate dehydrogenase OS=Homo sapiens GN=GAPDH PE=1 SV=3)

HSP 1 Score: 73.9442 bits (180), Expect = 5.635e-13
Identity = 41/128 (32.03%), Postives = 57/128 (44.53%), Query Frame = 3
Query:    9 RAAALNIVPTSTXXXXXXXXXXXXXXXXXNGIALRVPTPNXXXXXXXXXXSKKTFAEEVNAAFRESADNELKGILSVCDEPLVSVDFRCXXXXXXXXXXXXXXMGDDMVKVIAWYDNEWGYSQRVVDL 392
            R A  NI+P ST                  G+A RVPT N           K    +++    +++++  LKGIL   +  +VS DF                + D  VK+I+WYDNE+GYS RVVDL
Sbjct:  200 RGALQNIIPASTGAAKAVGKVIPELNGKLTGMAFRVPTANVSVVDLTCRLEKPAKYDDIKKVVKQASEGPLKGILGYTEHQVVSSDFNSDTHSSTFDAGAGIALNDHFVKLISWYDNEFGYSNRVVDL 327          
BLAST of CX300037 vs. ExPASy Swiss-Prot
Match: G3P_CHLPN (Glyceraldehyde-3-phosphate dehydrogenase OS=Chlamydia pneumoniae GN=gap PE=3 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 5.635e-13
Identity = 42/137 (30.66%), Postives = 61/137 (44.53%), Query Frame = 3
Query:    9 RAAALNIVPTSTXXXXXXXXXXXXXXXXXNGIALRVPTPNXXXXXXXXXXSKKTFAEEVNAAFRESADNELKGILSVCDEPLVSVDFRCXXXXXXXXXXXXXXMGDDMVKVIAWYDNEWGYSQRVVDLADIVANNWK 419
            R    NI+P ST                  G+A RVP  +           K T  +++  A +++++ +LKGIL   DE +VS DF                + D   K++AWYDNE GY+ R+VDL + V  N K
Sbjct:  199 RGCLQNIIPASTGAAKAVTLCLPELKGKLTGMAFRVPIEDVSVVDLTVRLDKSTTYDDICKAMKQASETDLKGILDYTDEQVVSSDFIGSEYSSIFDALAGIALNDRFFKLVAWYDNETGYATRIVDLLEYVEKNSK 335          
BLAST of CX300037 vs. ExPASy Swiss-Prot
Match: G3P_HAEIN (Glyceraldehyde-3-phosphate dehydrogenase OS=Haemophilus influenzae GN=gapA PE=3 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 7.359e-13
Identity = 42/139 (30.22%), Postives = 63/139 (45.32%), Query Frame = 3
Query:    9 RAAALNIVPTSTXXXXXXXXXXXXXXXXXNGIALRVPTPNXXXXXXXXXXSKKTFAEEVNAAFRESADN-----ELKGILSVCDEPLVSVDFRCXXXXXXXXXXXXXXMGDDMVKVIAWYDNEWGYSQRVVDLADIVAN 410
            R A+ NI+P+ST                  G+A RVPTPN           K    + +  A +++A+      ELKG+L   ++ +VS DF                + D  VK+++WYDNE GYS +V+DL   + N
Sbjct:  198 RGASQNIIPSSTGAAKAVGKVLPALNGKLTGMAFRVPTPNVSVVDLTVNLEKPASYDAIKQAIKDAAEGKTFNGELKGVLGYTEDAVVSTDFNGCALTSVFDADAGIALTDSFVKLVSWYDNETGYSNKVLDLVAHIYN 336          
BLAST of CX300037 vs. ExPASy Swiss-Prot
Match: G3P_CANAL (Glyceraldehyde-3-phosphate dehydrogenase OS=Candida albicans GN=TDH1 PE=1 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 9.612e-13
Identity = 41/133 (30.83%), Postives = 64/133 (48.12%), Query Frame = 3
Query:    9 RAAALNIVPTSTXXXXXXXXXXXXXXXXXNGIALRVPTPNXXXXXXXXXXSKKTFAEEVNAAFRESADNELKGILSVCDEPLVSVDFRCXXXXXXXXXXXXXXMGDDMVKVIAWYDNEWGYSQRVVDLADIVA 407
            R A+ NI+P+ST                  G++LR+PT +           K    EE+  A +++++  LKG+L   ++ +VS DF                +    VK+I+WYDNE+GYS +VVDL + VA
Sbjct:  199 RTASGNIIPSSTGAAKAVGKVIPELNGKLTGMSLRLPTTDVSVVDLTVRLKKAASYEEIAPAIKKASEGPLKGVLGYTEDAVVSTDFLGSSYSSIFDEKAGILLSPTFVKLISWYDNEYGYSTKVVDLLEHVA 331          
BLAST of CX300037 vs. ExPASy Swiss-Prot
Match: G3PT_RAT (Glyceraldehyde-3-phosphate dehydrogenase, testis-specific OS=Rattus norvegicus GN=Gapdhs PE=1 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 9.612e-13
Identity = 40/128 (31.25%), Postives = 59/128 (46.09%), Query Frame = 3
Query:    9 RAAALNIVPTSTXXXXXXXXXXXXXXXXXNGIALRVPTPNXXXXXXXXXXSKKTFAEEVNAAFRESADNELKGILSVCDEPLVSVDFRCXXXXXXXXXXXXXXMGDDMVKVIAWYDNEWGYSQRVVDL 392
            R A  NI+P+ST                  G+A RVPTPN          ++      +  A + +A   + GIL+  ++ +VS DF                + D+ VK+++WYDNE+GYS RVVDL
Sbjct:  296 RGAHQNIIPSSTGAAKAVGKVIPELNGKLTGMAFRVPTPNVSVVDLTCRLAQPASYTAIKEAVKAAAKGPMAGILAYTEDQVVSTDFNGDSHSSIFDAKAGIALNDNFVKLVSWYDNEYGYSHRVVDL 423          
BLAST of CX300037 vs. ExPASy Swiss-Prot
Match: G3P1_YEAST (Glyceraldehyde-3-phosphate dehydrogenase 1 OS=Saccharomyces cerevisiae GN=TDH1 PE=1 SV=3)

HSP 1 Score: 73.1738 bits (178), Expect = 9.612e-13
Identity = 41/133 (30.83%), Postives = 63/133 (47.37%), Query Frame = 3
Query:    9 RAAALNIVPTSTXXXXXXXXXXXXXXXXXNGIALRVPTPNXXXXXXXXXXSKKTFAEEVNAAFRESADNELKGILSVCDEPLVSVDFRCXXXXXXXXXXXXXXMGDDMVKVIAWYDNEWGYSQRVVDLADIVA 407
            R A+ NI+P+ST                  G+A RVPT +           K+   +++  A + +A+  +KG+L   ++ +VS DF                +    VK+I+WYDNE+GYS RVVDL + VA
Sbjct:  198 RTASGNIIPSSTGAAKAVGKVLPELQGKLTGMAFRVPTVDVSVVDLTVKLEKEATYDQIKKAVKAAAEGPMKGVLGYTEDAVVSSDFLGDTHASIFDASAGIQLSPKFVKLISWYDNEYGYSARVVDLIEYVA 330          
BLAST of CX300037 vs. ExPASy Swiss-Prot
Match: E4PD_PSEA6 (D-erythrose-4-phosphate dehydrogenase OS=Pseudoalteromonas atlantica (strain T6c / BAA-1087) GN=epd PE=3 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 9.612e-13
Identity = 41/130 (31.54%), Postives = 57/130 (43.85%), Query Frame = 3
Query:    3 RARAAALNIVPTSTXXXXXXXXXXXXXXXXXNGIALRVPTPNXXXXXXXXXXSKKTFAEEVNAAFRESADNELKGILSVCDEPLVSVDFRCXXXXXXXXXXXXXXMGDDMVKVIAWYDNEWGYSQRVVDL 392
            R RAA+ +I+P  T                   IA+RVPT N            K   ++VN A +   +  L GIL   +EPLVSVDF                    +VK++ W DNEWG+S R++D+
Sbjct:  199 RTRAASQSIIPVDTKLARGIERVLPKFAGKFEAIAVRVPTINVSAMDLSVTLDAKVTIDDVNQALKTVKNGRLNGILDFTEEPLVSVDFNHDAHSCIVDGTQTRVSHKQLVKLLVWCDNEWGFSNRMIDI 328          
BLAST of CX300037 vs. ExPASy Swiss-Prot
Match: G3P_BUCAP (Glyceraldehyde-3-phosphate dehydrogenase OS=Buchnera aphidicola subsp. Schizaphis graminum GN=gapA PE=3 SV=2)

HSP 1 Score: 72.7886 bits (177), Expect = 1.255e-12
Identity = 40/133 (30.08%), Postives = 60/133 (45.11%), Query Frame = 3
Query:    9 RAAALNIVPTSTXXXXXXXXXXXXXXXXXNGIALRVPTPNXXXXXXXXXXSKKTFAEEVNAAFRESADNELKGILSVCDEPLVSVDFRCXXXXXXXXXXXXXXMGDDMVKVIAWYDNEWGYSQRVVDLADIVA 407
            R A  NI+P+ST                  GIA RVPT N           K     E+    + +++ ++KGIL   ++ +VS DF                +  +  K+I+WYDNE GYS +V+DL ++VA
Sbjct:  198 RGALQNIIPSSTGAAVAVGKVLPNLNGKLTGIAFRVPTANVSVVDLTVRYKKTATYNEICEVVKNASEQKMKGILGYTEDEVVSTDFNGKELTSIFDAKAGLSLNKNFAKLISWYDNETGYSSKVLDLVELVA 330          
BLAST of CX300037 vs. ExPASy Swiss-Prot
Match: G3PT_BOVIN (Glyceraldehyde-3-phosphate dehydrogenase, testis-specific OS=Bos taurus GN=GAPDHS PE=2 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 1.255e-12
Identity = 41/128 (32.03%), Postives = 59/128 (46.09%), Query Frame = 3
Query:    9 RAAALNIVPTSTXXXXXXXXXXXXXXXXXNGIALRVPTPNXXXXXXXXXXSKKTFAEEVNAAFRESADNELKGILSVCDEPLVSVDFRCXXXXXXXXXXXXXXMGDDMVKVIAWYDNEWGYSQRVVDL 392
            R A  NI+P ST                  G+A RVPTP+          ++ T    +  A + +A   + GIL+  ++ +VS DF                + D+ VK+I+WYDNE+GYS RVVDL
Sbjct:  259 RGAHQNIIPASTGAAKAVGKVIPDLKGKLTGMAFRVPTPDVSVVDLTCRLAQPTPYSAIKDAIKAAAKGPMAGILAYTEDEVVSTDFLSDTHSSIFDAKAGIALNDNFVKLISWYDNEYGYSNRVVDL 386          
The following BLAST results are available for this feature:
BLAST of CX300037 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 270
Match NameE-valueIdentityDescription
G3P_ASPOR4.314e-1331.78Glyceraldehyde-3-phosphate dehydrogenase OS=Asperg... [more]
G3P_HUMAN5.635e-1332.03Glyceraldehyde-3-phosphate dehydrogenase OS=Homo s... [more]
G3P_CHLPN5.635e-1330.66Glyceraldehyde-3-phosphate dehydrogenase OS=Chlamy... [more]
G3P_HAEIN7.359e-1330.22Glyceraldehyde-3-phosphate dehydrogenase OS=Haemop... [more]
G3P_CANAL9.612e-1330.83Glyceraldehyde-3-phosphate dehydrogenase OS=Candid... [more]
G3PT_RAT9.612e-1331.25Glyceraldehyde-3-phosphate dehydrogenase, testis-s... [more]
G3P1_YEAST9.612e-1330.83Glyceraldehyde-3-phosphate dehydrogenase 1 OS=Sacc... [more]
E4PD_PSEA69.612e-1331.54D-erythrose-4-phosphate dehydrogenase OS=Pseudoalt... [more]
G3P_BUCAP1.255e-1230.08Glyceraldehyde-3-phosphate dehydrogenase OS=Buchne... [more]
G3PT_BOVIN1.255e-1232.03Glyceraldehyde-3-phosphate dehydrogenase, testis-s... [more]

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Properties
Property NameValue
Genbank descriptionC07005D01SK SaltLeaf1 Citrus clementina cDNA clone C07005D01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX300037 ID=CX300037; Name=CX300037; organism=Citrus clementina; type=EST; length=555bp
GGCGTGCAAGAGCAGCTGCACTCAACATTGTCCCAACATCAACTGGTGCG
GCAAAAGCTGTGGCCCTTGTCCTCCCAGCACTCAAAGGCAAACTAAACGG
CATTGCCCTTCGTGTGCCAACACCAAACGTCTCGGTTGTTGATCTTGTCG
TTCAGGTGTCGAAGAAAACCTTCGCAGAAGAGGTGAACGCCGCTTTCAGA
GAAAGCGCTGACAATGAACTGAAAGGGATCCTCTCCGTGTGCGACGAGCC
CCTCGTTTCGGTCGACTTCAGGTGCTCTGATGTATCCTCAACCGTTGATT
CATCTCTCACACTTGTCATGGGAGACGACATGGTTAAGGTGATTGCATGG
TATGACAATGAATGGGGTTACTCTCAAAGGGTTGTGGATTTGGCCGACAT
TGTTGCCAACAACTGGAAGTGAAGTAAATACTAAAATCGGAACTCGGCTG
TAATCGGCACAACGATGTTCTTGTTTTTCATTTTTGGTTCCCCCATTTAT
TGTTCTGCGTCTTAAAATTTGTAGAATGTATAACACTATCTTATTATGGA
ACCTT
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