CX300037

Overview
NameCX300037
Unique NameCX300037
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length555
Libraries
Library NameType
SaltLeaf1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig5796 contig Ccv1_Contig5796:899..1453. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX300037 vs. ExPASy Swiss-Prot
Match: G3P_BACST (Glyceraldehyde-3-phosphate dehydrogenase OS=Bacillus stearothermophilus GN=gap PE=1 SV=5)

HSP 1 Score: 104.375 bits (259), Expect = 3.893e-22
Identity = 58/136 (42.65%), Postives = 75/136 (55.15%), Query Frame = 3
Query:    3 RARAAALNIVPTSTXXXXXXXXXXXXXXXXXNGIALRVPTPNXXXXXXXXXXSKKTFAEEVNAAFRESADNELKGILSVCDEPLVSVDFRCXXXXXXXXXXXXXXMGDDMVKVIAWYDNEWGYSQRVVDLADIVAN 410
            RARAAA +I+PT+T                 NG+A+RVPTPN           K+   EEVNAA + +A+ ELKGIL+  +EPLVS D+                +   MVKV++WYDNE GYS RVVDLA  +A+
Sbjct:  197 RARAAAESIIPTTTGAAKAVALVLPELKGKLNGMAMRVPTPNVSVVDLVAELEKEVTVEEVNAALKAAAEGELKGILAYSEEPLVSRDYNGSTVSSTIDALSTMVIDGKMVKVVSWYDNETGYSHRVVDLAAYIAS 332          
BLAST of CX300037 vs. ExPASy Swiss-Prot
Match: G3P_MYCTU (Glyceraldehyde-3-phosphate dehydrogenase OS=Mycobacterium tuberculosis GN=gap PE=3 SV=1)

HSP 1 Score: 99.3673 bits (246), Expect = 1.252e-20
Identity = 56/137 (40.88%), Postives = 70/137 (51.09%), Query Frame = 3
Query:    3 RARAAALNIVPTSTXXXXXXXXXXXXXXXXXNGIALRVPTPNXXXXXXXXXXSKKTFAEEVNAAFRESADNELKGILSVCDEPLVSVDFRCXXXXXXXXXXXXXXMGDDMVKVIAWYDNEWGYSQRVVDLADIVANN 413
            RARAAALNIVPTST                 +G ALRVP P           S +   +E+NAAF+ +A+  LKGIL   D P+VS D                 + DD  KV++WYDNEWGYS R+VDL  +V  +
Sbjct:  203 RARAAALNIVPTSTGAAKAIGLVMPQLKGKLDGYALRVPIPTGSVTDLTVDLSTRASVDEINAAFKAAAEGRLKGILKYYDAPIVSSDIVTDPHSSIFDSGLTKVI-DDQAKVVSWYDNEWGYSNRLVDLVTLVGKS 338          
BLAST of CX300037 vs. ExPASy Swiss-Prot
Match: G3P_MYCBO (Glyceraldehyde-3-phosphate dehydrogenase OS=Mycobacterium bovis GN=gap PE=3 SV=1)

HSP 1 Score: 99.3673 bits (246), Expect = 1.252e-20
Identity = 56/137 (40.88%), Postives = 70/137 (51.09%), Query Frame = 3
Query:    3 RARAAALNIVPTSTXXXXXXXXXXXXXXXXXNGIALRVPTPNXXXXXXXXXXSKKTFAEEVNAAFRESADNELKGILSVCDEPLVSVDFRCXXXXXXXXXXXXXXMGDDMVKVIAWYDNEWGYSQRVVDLADIVANN 413
            RARAAALNIVPTST                 +G ALRVP P           S +   +E+NAAF+ +A+  LKGIL   D P+VS D                 + DD  KV++WYDNEWGYS R+VDL  +V  +
Sbjct:  203 RARAAALNIVPTSTGAAKAIGLVMPQLKGKLDGYALRVPIPTGSVTDLTVDLSTRASVDEINAAFKAAAEGRLKGILKYYDAPIVSSDIVTDPHSSIFDSGLTKVI-DDQAKVVSWYDNEWGYSNRLVDLVTLVGKS 338          
BLAST of CX300037 vs. ExPASy Swiss-Prot
Match: G3P_THEMA (Glyceraldehyde-3-phosphate dehydrogenase OS=Thermotoga maritima GN=gap PE=1 SV=2)

HSP 1 Score: 97.8265 bits (242), Expect = 3.644e-20
Identity = 52/134 (38.81%), Postives = 72/134 (53.73%), Query Frame = 3
Query:    3 RARAAALNIVPTSTXXXXXXXXXXXXXXXXXNGIALRVPTPNXXXXXXXXXXSKKTFAEEVNAAFRESADNELKGILSVCDEPLVSVDFRCXXXXXXXXXXXXXXMGDDMVKVIAWYDNEWGYSQRVVDLADIV 404
            RARAAA+NI+PT+T                 +G+A+RVPTP+           K+T  EEVNA  +E+ +  LKGI+   DEP+VS D                 +G  +VKV +WYDNE+GYS RVVD  +++
Sbjct:  197 RARAAAVNIIPTTTGAAKAVALVVPEVKGKLDGMAIRVPTPDGSITDLTVLVEKETTVEEVNAVMKEATEGRLKGIIGYNDEPIVSSDIIGTTFSGIFDATITNVIGGKLVKVASWYDNEYGYSNRVVDTLELL 330          
BLAST of CX300037 vs. ExPASy Swiss-Prot
Match: G3P2_BACSU (Glyceraldehyde-3-phosphate dehydrogenase 2 OS=Bacillus subtilis GN=gapB PE=1 SV=1)

HSP 1 Score: 97.8265 bits (242), Expect = 3.644e-20
Identity = 56/139 (40.29%), Postives = 67/139 (48.20%), Query Frame = 3
Query:    3 RARAAALNIVPTSTXXXXXXXXXXXXXXXXXNGIALRVPTPNXXXXXXXXXXSKKTFAEEVNAAFRESADNELKGILSVCDEPLVSVDFRCXXXXXXXXXXXXXXMGDDMVKVIAWYDNEWGYSQRVVDLADIVANNWK 419
            RARA   +I+PT+T                 +G+ALRVP PN               AEEVN AF+ +A   + G+L   DEPLVS D+                M D  VKV+AWYDNEWGYS RVVDL   VA   K
Sbjct:  197 RARACGESIIPTTTGAAKALSLVLPHLKGKLHGLALRVPVPNVSLVDLVVDLKTDVTAEEVNEAFKRAAKTSMYGVLDYSDEPLVSTDYNTNPHSAVIDGLTTMVMEDRKVKVLAWYDNEWGYSCRVVDLIRHVAARMK 335          
BLAST of CX300037 vs. ExPASy Swiss-Prot
Match: G3P_MYCAV (Glyceraldehyde-3-phosphate dehydrogenase OS=Mycobacterium avium GN=gapA PE=3 SV=3)

HSP 1 Score: 96.6709 bits (239), Expect = 8.118e-20
Identity = 55/137 (40.15%), Postives = 69/137 (50.36%), Query Frame = 3
Query:    3 RARAAALNIVPTSTXXXXXXXXXXXXXXXXXNGIALRVPTPNXXXXXXXXXXSKKTFAEEVNAAFRESADNELKGILSVCDEPLVSVDFRCXXXXXXXXXXXXXXMGDDMVKVIAWYDNEWGYSQRVVDLADIVANN 413
            RARAAALNIVPTST                 +G ALRVP P            K    E++NAAF+ +A+  LKGIL   D P+VS D                 + D+  KV++WYDNEWGYS R+VDL  +V  +
Sbjct:  203 RARAAALNIVPTSTGAAKAIGLVMPNLKGKLDGYALRVPIPTGSVTDLTAELKKPASVEDINAAFKAAAEGRLKGILKYYDAPIVSSDIVTDPHSSIFDSGLTKVI-DNQAKVVSWYDNEWGYSNRLVDLVALVGKS 338          
BLAST of CX300037 vs. ExPASy Swiss-Prot
Match: G3P_MYCLE (Glyceraldehyde-3-phosphate dehydrogenase OS=Mycobacterium leprae GN=gapA PE=3 SV=1)

HSP 1 Score: 93.5893 bits (231), Expect = 6.872e-19
Identity = 53/137 (38.69%), Postives = 67/137 (48.91%), Query Frame = 3
Query:    3 RARAAALNIVPTSTXXXXXXXXXXXXXXXXXNGIALRVPTPNXXXXXXXXXXSKKTFAEEVNAAFRESADNELKGILSVCDEPLVSVDFRCXXXXXXXXXXXXXXMGDDMVKVIAWYDNEWGYSQRVVDLADIVANN 413
            RARAAALN+VPTST                 +G ALRVP P           SK     E+NA F+++A+  LKGIL   D P+VS D                 +     KV++WYDNEWGYS R+VDL  +V  +
Sbjct:  203 RARAAALNVVPTSTGAAKAIGLVMPELKGKLDGYALRVPIPTGSVTDLTADLSKCVSVNEINAVFQDAAEGRLKGILKYVDAPIVSSDIVTDPHSSIFDSGLTKVIA-SQAKVVSWYDNEWGYSNRLVDLVGLVGKS 338          
BLAST of CX300037 vs. ExPASy Swiss-Prot
Match: G3P2_STAAW (Glyceraldehyde-3-phosphate dehydrogenase 2 OS=Staphylococcus aureus (strain MW2) GN=gapA2 PE=3 SV=1)

HSP 1 Score: 93.2041 bits (230), Expect = 8.975e-19
Identity = 55/132 (41.67%), Postives = 68/132 (51.52%), Query Frame = 3
Query:    3 RARAAALNIVPTSTXXXXXXXXXXXXXXXXXNGIALRVPTPNXXXXXXXXXXSKKTFAEEVNAAFRESADNELKGILSVCDEPLVSVDFRCXXXXXXXXXXXXXXMGDDMVKVIAWYDNEWGYSQRVVDLAD 398
            RAR+   +I+PTST                 +G+ALRVPT N           K+  AEEVN AF  +    L+GI+ V  +PLVSVDF                M  + VKVIAWYDNEWGYS RVVD+A+
Sbjct:  198 RARSCNESIIPTSTGAAKALKEVLPELEGKLHGMALRVPTKNVSLVDLVVDLEKEVTAEEVNQAFENAG---LEGIIEVEHQPLVSVDFNTNPNSAIIDAKSTMVMSGNKVKVIAWYDNEWGYSNRVVDVAE 326          
BLAST of CX300037 vs. ExPASy Swiss-Prot
Match: G3P2_STAAS (Glyceraldehyde-3-phosphate dehydrogenase 2 OS=Staphylococcus aureus (strain MSSA476) GN=gapA2 PE=3 SV=1)

HSP 1 Score: 93.2041 bits (230), Expect = 8.975e-19
Identity = 55/132 (41.67%), Postives = 68/132 (51.52%), Query Frame = 3
Query:    3 RARAAALNIVPTSTXXXXXXXXXXXXXXXXXNGIALRVPTPNXXXXXXXXXXSKKTFAEEVNAAFRESADNELKGILSVCDEPLVSVDFRCXXXXXXXXXXXXXXMGDDMVKVIAWYDNEWGYSQRVVDLAD 398
            RAR+   +I+PTST                 +G+ALRVPT N           K+  AEEVN AF  +    L+GI+ V  +PLVSVDF                M  + VKVIAWYDNEWGYS RVVD+A+
Sbjct:  198 RARSCNESIIPTSTGAAKALKEVLPELEGKLHGMALRVPTKNVSLVDLVVDLEKEVTAEEVNQAFENAG---LEGIIEVEHQPLVSVDFNTNPNSAIIDAKSTMVMSGNKVKVIAWYDNEWGYSNRVVDVAE 326          
BLAST of CX300037 vs. ExPASy Swiss-Prot
Match: G3P2_STAAR (Glyceraldehyde-3-phosphate dehydrogenase 2 OS=Staphylococcus aureus (strain MRSA252) GN=gapA2 PE=3 SV=1)

HSP 1 Score: 93.2041 bits (230), Expect = 8.975e-19
Identity = 55/132 (41.67%), Postives = 68/132 (51.52%), Query Frame = 3
Query:    3 RARAAALNIVPTSTXXXXXXXXXXXXXXXXXNGIALRVPTPNXXXXXXXXXXSKKTFAEEVNAAFRESADNELKGILSVCDEPLVSVDFRCXXXXXXXXXXXXXXMGDDMVKVIAWYDNEWGYSQRVVDLAD 398
            RAR+   +I+PTST                 +G+ALRVPT N           K+  AEEVN AF  +    L+GI+ V  +PLVSVDF                M  + VKVIAWYDNEWGYS RVVD+A+
Sbjct:  198 RARSCNESIIPTSTGAAKALKEVLPELEGKLHGMALRVPTKNVSLVDLVVDLEKEVTAEEVNQAFENAG---LEGIIEVEHQPLVSVDFNTNPHSAIIDAKSTMVMSGNKVKVIAWYDNEWGYSNRVVDVAE 326          
The following BLAST results are available for this feature:
BLAST of CX300037 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 270
Match NameE-valueIdentityDescription
G3P_BACST3.893e-2242.65Glyceraldehyde-3-phosphate dehydrogenase OS=Bacill... [more]
G3P_MYCTU1.252e-2040.88Glyceraldehyde-3-phosphate dehydrogenase OS=Mycoba... [more]
G3P_MYCBO1.252e-2040.88Glyceraldehyde-3-phosphate dehydrogenase OS=Mycoba... [more]
G3P_THEMA3.644e-2038.81Glyceraldehyde-3-phosphate dehydrogenase OS=Thermo... [more]
G3P2_BACSU3.644e-2040.29Glyceraldehyde-3-phosphate dehydrogenase 2 OS=Baci... [more]
G3P_MYCAV8.118e-2040.15Glyceraldehyde-3-phosphate dehydrogenase OS=Mycoba... [more]
G3P_MYCLE6.872e-1938.69Glyceraldehyde-3-phosphate dehydrogenase OS=Mycoba... [more]
G3P2_STAAW8.975e-1941.67Glyceraldehyde-3-phosphate dehydrogenase 2 OS=Stap... [more]
G3P2_STAAS8.975e-1941.67Glyceraldehyde-3-phosphate dehydrogenase 2 OS=Stap... [more]
G3P2_STAAR8.975e-1941.67Glyceraldehyde-3-phosphate dehydrogenase 2 OS=Stap... [more]

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Properties
Property NameValue
Genbank descriptionC07005D01SK SaltLeaf1 Citrus clementina cDNA clone C07005D01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX300037 ID=CX300037; Name=CX300037; organism=Citrus clementina; type=EST; length=555bp
GGCGTGCAAGAGCAGCTGCACTCAACATTGTCCCAACATCAACTGGTGCG
GCAAAAGCTGTGGCCCTTGTCCTCCCAGCACTCAAAGGCAAACTAAACGG
CATTGCCCTTCGTGTGCCAACACCAAACGTCTCGGTTGTTGATCTTGTCG
TTCAGGTGTCGAAGAAAACCTTCGCAGAAGAGGTGAACGCCGCTTTCAGA
GAAAGCGCTGACAATGAACTGAAAGGGATCCTCTCCGTGTGCGACGAGCC
CCTCGTTTCGGTCGACTTCAGGTGCTCTGATGTATCCTCAACCGTTGATT
CATCTCTCACACTTGTCATGGGAGACGACATGGTTAAGGTGATTGCATGG
TATGACAATGAATGGGGTTACTCTCAAAGGGTTGTGGATTTGGCCGACAT
TGTTGCCAACAACTGGAAGTGAAGTAAATACTAAAATCGGAACTCGGCTG
TAATCGGCACAACGATGTTCTTGTTTTTCATTTTTGGTTCCCCCATTTAT
TGTTCTGCGTCTTAAAATTTGTAGAATGTATAACACTATCTTATTATGGA
ACCTT
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