CX300037

Overview
NameCX300037
Unique NameCX300037
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length555
Libraries
Library NameType
SaltLeaf1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX300037 vs. ExPASy Swiss-Prot
Match: G3P1_JACOR (Glyceraldehyde-3-phosphate dehydrogenase, muscle OS=Jaculus orientalis PE=1 SV=2)

HSP 1 Score: 72.7886 bits (177), Expect = 1.255e-12
Identity = 40/126 (31.75%), Postives = 56/126 (44.44%), Query Frame = 3
Query:   15 AALNIVPTSTXXXXXXXXXXXXXXXXXNGIALRVPTPNXXXXXXXXXXSKKTFAEEVNAAFRESADNELKGILSVCDEPLVSVDFRCXXXXXXXXXXXXXXMGDDMVKVIAWYDNEWGYSQRVVDL 392
            AA NI+P ST                  G+A RVPT N           K    +++    +++ D  LKG+L   +  +VS DF                + D  VK+++WYDNE+GYS RVVDL
Sbjct:  230 AAQNIIPASTGAAKAVGKVIPELNGKLTGMAFRVPTANVSVVDLTCRLEKPAKYDDIKRVVKQACDGPLKGMLGYTEHQVVSSDFNGDSHSSTFDAGAGIALNDHFVKLVSWYDNEFGYSNRVVDL 355          
BLAST of CX300037 vs. ExPASy Swiss-Prot
Match: E4PD_PSYIN (D-erythrose-4-phosphate dehydrogenase OS=Psychromonas ingrahamii (strain 37) GN=epd PE=3 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 1.639e-12
Identity = 40/136 (29.41%), Postives = 62/136 (45.59%), Query Frame = 3
Query:    3 RARAAALNIVPTSTXXXXXXXXXXXXXXXXXNGIALRVPTPNXXXXXXXXXXSKKTFAEEVNAAFRESADNELKGILSVCDEPLVSVDFRCXXXXXXXXXXXXXXMGDDMVKVIAWYDNEWGYSQRVVDLADIVAN 410
            R RAA+ +I+P  T                   IA+RVPT N          SK    +E+N    ++++  LK IL   + PLVS+DF                   ++VK++ W DNEWG++ R++D +  +AN
Sbjct:  200 RTRAASQSIIPVDTKLAAGIERILPKFANKFEAIAVRVPTINVTAMDLSITVSKDVTIQEINDCLLKASETNLKDILGYTEAPLVSIDFNHDPRSCIIDGTQTRVSDGNLVKLLVWCDNEWGFANRLLDTSFYLAN 335          
BLAST of CX300037 vs. ExPASy Swiss-Prot
Match: E4PD_AERS4 (D-erythrose-4-phosphate dehydrogenase OS=Aeromonas salmonicida (strain A449) GN=epd PE=3 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 2.141e-12
Identity = 41/129 (31.78%), Postives = 58/129 (44.96%), Query Frame = 3
Query:    3 RARAAALNIVPTSTXXXXXXXXXXXXXXXXXNGIALRVPTPNXXXXXXXXXXSKKTFAEEVNAAFRESADNELKGILSVCDEPLVSVDFRCXXXXXXXXXXXXXXMGDDMVKVIAWYDNEWGYSQRVVD 389
            R RAA+ +I+P  T                   IA+RVPT N           KK    +VN A + ++   L GIL   +EPLVSVDF                   ++VK++ W DNEWG++ R++D
Sbjct:  199 RTRAASQSIIPVDTKLAKGLERILPHFAGKFEAIAVRVPTINVTAMDLSITVRKKVTVTDVNQALQRASRGTLSGILDYTEEPLVSVDFNHDAHSCIIDGTQTRVSDANLVKMLMWCDNEWGFANRMLD 327          
BLAST of CX300037 vs. ExPASy Swiss-Prot
Match: E4PD_AERHH (D-erythrose-4-phosphate dehydrogenase OS=Aeromonas hydrophila subsp. hydrophila (strain ATCC 7966 / NCIB 9240) GN=epd PE=3 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 2.141e-12
Identity = 41/129 (31.78%), Postives = 58/129 (44.96%), Query Frame = 3
Query:    3 RARAAALNIVPTSTXXXXXXXXXXXXXXXXXNGIALRVPTPNXXXXXXXXXXSKKTFAEEVNAAFRESADNELKGILSVCDEPLVSVDFRCXXXXXXXXXXXXXXMGDDMVKVIAWYDNEWGYSQRVVD 389
            R RAA+ +I+P  T                   IA+RVPT N           KK    +VN A + ++   L GIL   +EPLVSVDF                   ++VK++ W DNEWG++ R++D
Sbjct:  199 RTRAASQSIIPVDTKLAKGLERILPHFAGKFEAIAVRVPTINVTAMDLSITVRKKVTVTDVNQALQRASRGTLSGILDYTEEPLVSVDFNHDAHSCIIDGTQTRVSDANLVKMLMWCDNEWGFANRMLD 327          
BLAST of CX300037 vs. ExPASy Swiss-Prot
Match: G3P_RALSO (Glyceraldehyde-3-phosphate dehydrogenase OS=Ralstonia solanacearum GN=gapA PE=3 SV=2)

HSP 1 Score: 71.633 bits (174), Expect = 2.797e-12
Identity = 36/128 (28.12%), Postives = 59/128 (46.09%), Query Frame = 3
Query:   24 NIVPTSTXXXXXXXXXXXXXXXXXNGIALRVPTPNXXXXXXXXXXSKKTFAEEVNAAFRESADNELKGILSVCDEPLVSVDFRCXXXXXXXXXXXXXXMGDDMVKVIAWYDNEWGYSQRVVDLADIVA 407
            NI+P+ST                  G++ RVPT +           K    +E+ A  +  +   LKG+L   ++ +V+ DFR               +    +KV++WYDNEWGYS +V+++A +VA
Sbjct:  204 NIIPSSTGAAKAVGVVIPQLNKKLTGMSFRVPTSDVSVVDLTVELEKAASYDEICAEMKAQSQGALKGVLGYTEDKVVATDFRGDARTSIFDAEAGIALDGTFIKVVSWYDNEWGYSNKVLEMARVVA 331          
BLAST of CX300037 vs. ExPASy Swiss-Prot
Match: G3P_PONAB (Glyceraldehyde-3-phosphate dehydrogenase OS=Pongo abelii GN=GAPDH PE=2 SV=3)

HSP 1 Score: 71.633 bits (174), Expect = 2.797e-12
Identity = 40/128 (31.25%), Postives = 56/128 (43.75%), Query Frame = 3
Query:    9 RAAALNIVPTSTXXXXXXXXXXXXXXXXXNGIALRVPTPNXXXXXXXXXXSKKTFAEEVNAAFRESADNELKGILSVCDEPLVSVDFRCXXXXXXXXXXXXXXMGDDMVKVIAWYDNEWGYSQRVVDL 392
            R A  NI+P ST                  G+A RVPT N           K    +++    +++++  LKGIL   +  +VS D                 + D  VK+I+WYDNE+GYS RVVDL
Sbjct:  200 RGALQNIIPASTGAAKAVGKVIPELNGKLTGMAFRVPTANVSVVDLTCRLEKAAKYDDIKKVVKQASEGPLKGILGYTEHQVVSSDLNSDTHSSTFDAGAGIALNDHFVKLISWYDNEFGYSNRVVDL 327          
BLAST of CX300037 vs. ExPASy Swiss-Prot
Match: G3P_PLESA (Glyceraldehyde-3-phosphate dehydrogenase OS=Pleurotus sajor-caju GN=GPD PE=2 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 2.797e-12
Identity = 43/133 (32.33%), Postives = 62/133 (46.62%), Query Frame = 3
Query:    9 RAAALNIVPTSTXXXXXXXXXXXXXXXXXNGIALRVPTPNXXXXXXXXXXSKKTFAEEVNAAFRESADNELKGILSVCDEPLVSVDFRCXXXXXXXXXXXXXXMGDDMVKVIAWYDNEWGYSQRVVDLADIVA 407
            R+   NI+P+ST                  G++ RVPT +           K    +E+ AA +E+++   KGIL    + +VS DF                +  + VK+IAWYDNE+GYS+RVVDL   VA
Sbjct:  197 RSVNNNIIPSSTGAANWVGKVIPSLNGKLTGLSFRVPTLDVSVVDLVVRLEKPADYKEIVAAIKEASETTHKGILGFTSDSVVSTDFVGSTDSSIFDSTAGIQLNPNFVKLIAWYDNEYGYSRRVVDLLKYVA 329          
BLAST of CX300037 vs. ExPASy Swiss-Prot
Match: G3P1_KLUMA (Glyceraldehyde-3-phosphate dehydrogenase 1 OS=Kluyveromyces marxianus GN=GAP1 PE=1 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 2.797e-12
Identity = 41/133 (30.83%), Postives = 63/133 (47.37%), Query Frame = 3
Query:    9 RAAALNIVPTSTXXXXXXXXXXXXXXXXXNGIALRVPTPNXXXXXXXXXXSKKTFAEEVNAAFRESADNELKGILSVCDEPLVSVDFRCXXXXXXXXXXXXXXMGDDMVKVIAWYDNEWGYSQRVVDLADIVA 407
            R A+ NI+P+ST                  G+A RVPT +           K    +E+ AA ++ ++ +LK ++   ++ +VS DF                +    VK++AWYDNE+GYS RVVDL + VA
Sbjct:  197 RTASGNIIPSSTGAAKAVGKVLPELQGKLTGMAFRVPTTDVSVVDLTVKLVKAATYDEIKAAVKKVSEGKLKDVVGYTEDAVVSSDFLGDTHSTIFDAAAGIQLSPKFVKLVAWYDNEYGYSTRVVDLVEHVA 329          
BLAST of CX300037 vs. ExPASy Swiss-Prot
Match: G3P_CRYNE (Glyceraldehyde-3-phosphate dehydrogenase OS=Cryptococcus neoformans GN=GPD PE=3 SV=2)

HSP 1 Score: 71.2478 bits (173), Expect = 3.652e-12
Identity = 41/134 (30.60%), Postives = 64/134 (47.76%), Query Frame = 3
Query:    9 RAAALNIVPTSTXXXXXXXXXXXXXXXXXNGIALRVPTPNXXXXXXXXXXSKKTFAEEVNAAFRESADN-ELKGILSVCDEPLVSVDFRCXXXXXXXXXXXXXXMGDDMVKVIAWYDNEWGYSQRVVDLADIVA 407
            R AA NI+P+ST                  G++ RVPT +           K    EE+    ++++++ ELKGIL   ++ +VS DF                +  + VK+++WYDNE+GYS+RV DL   +A
Sbjct:  199 RGAAANIIPSSTGAAKAVGKVIPSLNGKLTGMSFRVPTSDVSVVDLVCRIEKGASYEEIKNVIKKASESPELKGILGYTEDAVVSTDFIGSTESSIFDAQAGIALNANFVKLVSWYDNEYGYSRRVCDLISYIA 332          
BLAST of CX300037 vs. ExPASy Swiss-Prot
Match: G3P_BUCAI (Glyceraldehyde-3-phosphate dehydrogenase OS=Buchnera aphidicola subsp. Acyrthosiphon pisum GN=gapA PE=3 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 3.652e-12
Identity = 39/133 (29.32%), Postives = 59/133 (44.36%), Query Frame = 3
Query:    9 RAAALNIVPTSTXXXXXXXXXXXXXXXXXNGIALRVPTPNXXXXXXXXXXSKKTFAEEVNAAFRESADNELKGILSVCDEPLVSVDFRCXXXXXXXXXXXXXXMGDDMVKVIAWYDNEWGYSQRVVDLADIVA 407
            R A  NI+P+ST                  G+A RVP  N           K     E+    ++++  E+KGI+   ++ +VS DF                +  + VK+IAWYDNE GYS +V+DL  +V+
Sbjct:  198 RGALQNIIPSSTGAAIAVGKVLPNLNGKLTGMAFRVPVSNVSVVDLTVRYKKSATYSEICQKIQQASQKEMKGIMGYTEDEVVSTDFNGEELTSIFDAKAGLSLNKNFVKLIAWYDNETGYSSKVLDLVSLVS 330          
The following BLAST results are available for this feature:
BLAST of CX300037 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 270
Match NameE-valueIdentityDescription
G3P1_JACOR1.255e-1231.75Glyceraldehyde-3-phosphate dehydrogenase, muscle O... [more]
E4PD_PSYIN1.639e-1229.41D-erythrose-4-phosphate dehydrogenase OS=Psychromo... [more]
E4PD_AERS42.141e-1231.78D-erythrose-4-phosphate dehydrogenase OS=Aeromonas... [more]
E4PD_AERHH2.141e-1231.78D-erythrose-4-phosphate dehydrogenase OS=Aeromonas... [more]
G3P_RALSO2.797e-1228.13Glyceraldehyde-3-phosphate dehydrogenase OS=Ralsto... [more]
G3P_PONAB2.797e-1231.25Glyceraldehyde-3-phosphate dehydrogenase OS=Pongo ... [more]
G3P_PLESA2.797e-1232.33Glyceraldehyde-3-phosphate dehydrogenase OS=Pleuro... [more]
G3P1_KLUMA2.797e-1230.83Glyceraldehyde-3-phosphate dehydrogenase 1 OS=Kluy... [more]
G3P_CRYNE3.652e-1230.60Glyceraldehyde-3-phosphate dehydrogenase OS=Crypto... [more]
G3P_BUCAI3.652e-1229.32Glyceraldehyde-3-phosphate dehydrogenase OS=Buchne... [more]

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Properties
Property NameValue
Genbank descriptionC07005D01SK SaltLeaf1 Citrus clementina cDNA clone C07005D01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX300037 ID=CX300037; Name=CX300037; organism=Citrus clementina; type=EST; length=555bp
GGCGTGCAAGAGCAGCTGCACTCAACATTGTCCCAACATCAACTGGTGCG
GCAAAAGCTGTGGCCCTTGTCCTCCCAGCACTCAAAGGCAAACTAAACGG
CATTGCCCTTCGTGTGCCAACACCAAACGTCTCGGTTGTTGATCTTGTCG
TTCAGGTGTCGAAGAAAACCTTCGCAGAAGAGGTGAACGCCGCTTTCAGA
GAAAGCGCTGACAATGAACTGAAAGGGATCCTCTCCGTGTGCGACGAGCC
CCTCGTTTCGGTCGACTTCAGGTGCTCTGATGTATCCTCAACCGTTGATT
CATCTCTCACACTTGTCATGGGAGACGACATGGTTAAGGTGATTGCATGG
TATGACAATGAATGGGGTTACTCTCAAAGGGTTGTGGATTTGGCCGACAT
TGTTGCCAACAACTGGAAGTGAAGTAAATACTAAAATCGGAACTCGGCTG
TAATCGGCACAACGATGTTCTTGTTTTTCATTTTTGGTTCCCCCATTTAT
TGTTCTGCGTCTTAAAATTTGTAGAATGTATAACACTATCTTATTATGGA
ACCTT
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