CX300037

Overview
NameCX300037
Unique NameCX300037
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length555
Libraries
Library NameType
SaltLeaf1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX300037 vs. ExPASy Swiss-Prot
Match: E4PD_SHEAM (D-erythrose-4-phosphate dehydrogenase OS=Shewanella amazonensis (strain ATCC BAA-1098 / SB2B) GN=epd PE=3 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 3.652e-12
Identity = 41/131 (31.30%), Postives = 56/131 (42.75%), Query Frame = 3
Query:    3 RARAAALNIVPTSTXXXXXXXXXXXXXXXXXNGIALRVPTPNXXXXXXXXXXSKKTFAEEVNAAFRESADNELKGILSVCDEPLVSVDFRCXXXXXXXXXXXXXXMGDDMVKVIAWYDNEWGYSQRVVDLA 395
            R RAA+ +I+P  T                   I++RVPT N            +     VNAA + +AD    GIL   DEPLVS DF                    +VK++ W DNEWG++ R++D A
Sbjct:  199 RTRAASQSIIPVDTKLARGIERILPQMKDKFEAISVRVPTINVTAIDLSVTLDTRVDIATVNAALKAAADGSASGILGYTDEPLVSCDFNHDPRSSVVDGTQTRVSAGHLVKMLLWCDNEWGFANRMLDTA 329          
BLAST of CX300037 vs. ExPASy Swiss-Prot
Match: G3P_LYOSH (Glyceraldehyde-3-phosphate dehydrogenase OS=Lyophyllum shimeji GN=GPD PE=3 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 4.770e-12
Identity = 39/128 (30.47%), Postives = 56/128 (43.75%), Query Frame = 3
Query:    9 RAAALNIVPTSTXXXXXXXXXXXXXXXXXNGIALRVPTPNXXXXXXXXXXSKKTFAEEVNAAFRESADNELKGILSVCDEPLVSVDFRCXXXXXXXXXXXXXXMGDDMVKVIAWYDNEWGYSQRVVDL 392
            RA   NI+P+ST                  G++ RVPT +           K    E++    +E+++   KGI+   +E +VS DF                +  + VK+I WYDNEWGYS RV DL
Sbjct:  198 RAVVNNIIPSSTGAAKAVGKVIPSLNGKLTGLSFRVPTIDVSVIDLVVRLEKPASYEDIKKTVKEASEGAYKGIIEYTEEQVVSADFIGHHASSIFDAQAGIQLNPNFVKLIVWYDNEWGYSARVCDL 325          
BLAST of CX300037 vs. ExPASy Swiss-Prot
Match: G3P_HELPY (Glyceraldehyde-3-phosphate dehydrogenase OS=Helicobacter pylori GN=gapA PE=3 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 4.770e-12
Identity = 42/134 (31.34%), Postives = 65/134 (48.51%), Query Frame = 3
Query:    3 RARAAALNIVPTSTXXXXXXXXXXXXXXXXXNGIALRVPTPNXXXXXXXXXXSKKTFAEEVNAAFRESADNELKGILSVCDEPLVSVDFRCXXXXXXXXXXXXXXMGDDMVKVIAWYDNEWGYSQRVVDLADIV 404
            R+RAAA NI+PT+T                 +G ++RVP+ +           KK   + +N    E++   LKG+L +  +  VS DF                + ++MVK++ WYDNEWGYS R+VD+A  +
Sbjct:  197 RSRAAASNIIPTTTKAALALHKVLPNLKNKMHGHSVRVPSLDVSMIDLSLFLEKKAPKDPINDLLIEASKGVLKGVLEIDLKERVSSDFISNPHSVIIAPDLTFTL-ENMVKIMGWYDNEWGYSNRLVDMAQFM 329          
BLAST of CX300037 vs. ExPASy Swiss-Prot
Match: E4PD_SHEFN (D-erythrose-4-phosphate dehydrogenase OS=Shewanella frigidimarina (strain NCIMB 400) GN=epd PE=3 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 4.770e-12
Identity = 38/129 (29.46%), Postives = 56/129 (43.41%), Query Frame = 3
Query:    3 RARAAALNIVPTSTXXXXXXXXXXXXXXXXXNGIALRVPTPNXXXXXXXXXXSKKTFAEEVNAAFRESADNELKGILSVCDEPLVSVDFRCXXXXXXXXXXXXXXMGDDMVKVIAWYDNEWGYSQRVVD 389
            R RAA  +I+P  T                   I++RVPT N           KK   E++N+  + +++    GIL   DEPLVS DF                    +VK++ W DNEWG++ R++D
Sbjct:  199 RTRAAGQSIIPVDTKLARGIERILPHMKDKFEAISVRVPTINVTAIDLSVTLEKKVNIEQINSVLQRASNGSFNGILGYTDEPLVSCDFNHDPRSSIVDGTQTRVSAGHLVKLLLWCDNEWGFANRMLD 327          
BLAST of CX300037 vs. ExPASy Swiss-Prot
Match: G3P_HELPJ (Glyceraldehyde-3-phosphate dehydrogenase OS=Helicobacter pylori J99 GN=gapA PE=3 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 6.230e-12
Identity = 41/134 (30.60%), Postives = 64/134 (47.76%), Query Frame = 3
Query:    3 RARAAALNIVPTSTXXXXXXXXXXXXXXXXXNGIALRVPTPNXXXXXXXXXXSKKTFAEEVNAAFRESADNELKGILSVCDEPLVSVDFRCXXXXXXXXXXXXXXMGDDMVKVIAWYDNEWGYSQRVVDLADIV 404
            R+RAAA NI+PT+T                 +G ++RVP+ +           KK   + +N     ++   LKG+L +  +  VS DF                + ++MVK++ WYDNEWGYS R+VD+A  +
Sbjct:  197 RSRAAASNIIPTTTKAALALHKVLPNLKNKMHGHSVRVPSLDVSMIDLSLFLEKKALKDPINDLLITASKGTLKGVLEIDLKERVSSDFISNPNSVIIAPDLTFTL-ENMVKIMGWYDNEWGYSNRLVDMAQFM 329          
BLAST of CX300037 vs. ExPASy Swiss-Prot
Match: G3PT_MACFA (Glyceraldehyde-3-phosphate dehydrogenase, testis-specific OS=Macaca fascicularis GN=GAPDHS PE=2 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 8.137e-12
Identity = 40/128 (31.25%), Postives = 58/128 (45.31%), Query Frame = 3
Query:    9 RAAALNIVPTSTXXXXXXXXXXXXXXXXXNGIALRVPTPNXXXXXXXXXXSKKTFAEEVNAAFRESADNELKGILSVCDEPLVSVDFRCXXXXXXXXXXXXXXMGDDMVKVIAWYDNEWGYSQRVVDL 392
            R A  NI+P ST                  G+A RVPTP+          ++      +  A + +A   + GIL+  ++ +VS DF                + D+ VK+I+WYDNE+GYS RVVDL
Sbjct:  273 RGAHQNIIPASTGAAKAVTKVIPELKGKLTGMAFRVPTPDVSVVDLTCRLAQPAPYSAIKEAIKAAAKGPMAGILAYTEDEVVSTDFVGDSHSSIFDAKAGIALNDNFVKLISWYDNEYGYSHRVVDL 400          
BLAST of CX300037 vs. ExPASy Swiss-Prot
Match: G3PT_HUMAN (Glyceraldehyde-3-phosphate dehydrogenase, testis-specific OS=Homo sapiens GN=GAPDHS PE=1 SV=2)

HSP 1 Score: 70.0922 bits (170), Expect = 8.137e-12
Identity = 40/128 (31.25%), Postives = 58/128 (45.31%), Query Frame = 3
Query:    9 RAAALNIVPTSTXXXXXXXXXXXXXXXXXNGIALRVPTPNXXXXXXXXXXSKKTFAEEVNAAFRESADNELKGILSVCDEPLVSVDFRCXXXXXXXXXXXXXXMGDDMVKVIAWYDNEWGYSQRVVDL 392
            R A  NI+P ST                  G+A RVPTP+          ++      +  A + +A   + GIL+  ++ +VS DF                + D+ VK+I+WYDNE+GYS RVVDL
Sbjct:  272 RGAHQNIIPASTGAAKAVTKVIPELKGKLTGMAFRVPTPDVSVVDLTCRLAQPAPYSAIKEAVKAAAKGPMAGILAYTEDEVVSTDFLGDTHSSIFDAKAGIALNDNFVKLISWYDNEYGYSHRVVDL 399          
BLAST of CX300037 vs. ExPASy Swiss-Prot
Match: G3P2_DROSU (Glyceraldehyde-3-phosphate dehydrogenase 2 (Fragment) OS=Drosophila subobscura GN=Gapdh2 PE=2 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 1.063e-11
Identity = 40/118 (33.90%), Postives = 52/118 (44.07%), Query Frame = 3
Query:    9 RAAALNIVPTSTXXXXXXXXXXXXXXXXXNGIALRVPTPNXXXXXXXXXXSKKTFAEEVNAAFRESADNELKGILSVCDEPLVSVDFRCXXXXXXXXXXXXXXMGDDMVKVIAWYDNE 362
            R AA NI+P +T                  G+A RVPTPN           K    +E+ A  +E+A+  LKGIL   DE +VS DF                + D  VK+I+WYDNE
Sbjct:  187 RGAAQNIIPAATGAAKAVGKVIPALNGKLTGMAFRVPTPNVSVVDLTVRLGKGASYDEIKAKVQEAANGPLKGILGYTDEEVVSTDFLSDTHSSVFDAKAGISLNDKFVKLISWYDNE 304          
BLAST of CX300037 vs. ExPASy Swiss-Prot
Match: E4PD_SALTY (D-erythrose-4-phosphate dehydrogenase OS=Salmonella typhimurium GN=epd PE=3 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 1.388e-11
Identity = 38/129 (29.46%), Postives = 55/129 (42.64%), Query Frame = 3
Query:    3 RARAAALNIVPTSTXXXXXXXXXXXXXXXXXNGIALRVPTPNXXXXXXXXXXSKKTFAEEVNAAFRESADNELKGILSVCDEPLVSVDFRCXXXXXXXXXXXXXXMGDDMVKVIAWYDNEWGYSQRVVD 389
            R RAA+ +I+P  T                   IA+RVPT N           K   A EVN   +++A     GI+   + PLVS+DF                 G  ++K + W DNEWG++ R++D
Sbjct:  200 RTRAASQSIIPVDTKLAAGITRIFPQFNDRFEAIAVRVPTINVTAIDLSVTVKKPVKASEVNQLLQKAAQGAFHGIVDYTESPLVSIDFNHDPHSAIVDGTQTRVSGAHLIKTLVWCDNEWGFANRMLD 328          
BLAST of CX300037 vs. ExPASy Swiss-Prot
Match: E4PD_SALTI (D-erythrose-4-phosphate dehydrogenase OS=Salmonella typhi GN=epd PE=3 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 1.388e-11
Identity = 38/129 (29.46%), Postives = 55/129 (42.64%), Query Frame = 3
Query:    3 RARAAALNIVPTSTXXXXXXXXXXXXXXXXXNGIALRVPTPNXXXXXXXXXXSKKTFAEEVNAAFRESADNELKGILSVCDEPLVSVDFRCXXXXXXXXXXXXXXMGDDMVKVIAWYDNEWGYSQRVVD 389
            R RAA+ +I+P  T                   IA+RVPT N           K   A EVN   +++A     GI+   + PLVS+DF                 G  ++K + W DNEWG++ R++D
Sbjct:  200 RTRAASQSIIPVDTKLAAGITRIFPQFNDRFEAIAVRVPTINVTAIDLSVTVKKPVKASEVNQLLQKAAQGAFHGIVDYTESPLVSIDFNHDPHSAIVDGTQTRVSGAHLIKTLVWCDNEWGFANRMLD 328          
The following BLAST results are available for this feature:
BLAST of CX300037 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 270
Match NameE-valueIdentityDescription
E4PD_SHEAM3.652e-1231.30D-erythrose-4-phosphate dehydrogenase OS=Shewanell... [more]
G3P_LYOSH4.770e-1230.47Glyceraldehyde-3-phosphate dehydrogenase OS=Lyophy... [more]
G3P_HELPY4.770e-1231.34Glyceraldehyde-3-phosphate dehydrogenase OS=Helico... [more]
E4PD_SHEFN4.770e-1229.46D-erythrose-4-phosphate dehydrogenase OS=Shewanell... [more]
G3P_HELPJ6.230e-1230.60Glyceraldehyde-3-phosphate dehydrogenase OS=Helico... [more]
G3PT_MACFA8.137e-1231.25Glyceraldehyde-3-phosphate dehydrogenase, testis-s... [more]
G3PT_HUMAN8.137e-1231.25Glyceraldehyde-3-phosphate dehydrogenase, testis-s... [more]
G3P2_DROSU1.063e-1133.90Glyceraldehyde-3-phosphate dehydrogenase 2 (Fragme... [more]
E4PD_SALTY1.388e-1129.46D-erythrose-4-phosphate dehydrogenase OS=Salmonell... [more]
E4PD_SALTI1.388e-1129.46D-erythrose-4-phosphate dehydrogenase OS=Salmonell... [more]

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Properties
Property NameValue
Genbank descriptionC07005D01SK SaltLeaf1 Citrus clementina cDNA clone C07005D01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX300037 ID=CX300037; Name=CX300037; organism=Citrus clementina; type=EST; length=555bp
GGCGTGCAAGAGCAGCTGCACTCAACATTGTCCCAACATCAACTGGTGCG
GCAAAAGCTGTGGCCCTTGTCCTCCCAGCACTCAAAGGCAAACTAAACGG
CATTGCCCTTCGTGTGCCAACACCAAACGTCTCGGTTGTTGATCTTGTCG
TTCAGGTGTCGAAGAAAACCTTCGCAGAAGAGGTGAACGCCGCTTTCAGA
GAAAGCGCTGACAATGAACTGAAAGGGATCCTCTCCGTGTGCGACGAGCC
CCTCGTTTCGGTCGACTTCAGGTGCTCTGATGTATCCTCAACCGTTGATT
CATCTCTCACACTTGTCATGGGAGACGACATGGTTAAGGTGATTGCATGG
TATGACAATGAATGGGGTTACTCTCAAAGGGTTGTGGATTTGGCCGACAT
TGTTGCCAACAACTGGAAGTGAAGTAAATACTAAAATCGGAACTCGGCTG
TAATCGGCACAACGATGTTCTTGTTTTTCATTTTTGGTTCCCCCATTTAT
TGTTCTGCGTCTTAAAATTTGTAGAATGTATAACACTATCTTATTATGGA
ACCTT
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