CX300037

Overview
NameCX300037
Unique NameCX300037
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length555
Libraries
Library NameType
SaltLeaf1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of CX300037 vs. ExPASy Swiss-Prot
Match: E4PD_SALSV (D-erythrose-4-phosphate dehydrogenase OS=Salmonella schwarzengrund (strain CVM19633) GN=epd PE=3 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 1.388e-11
Identity = 38/129 (29.46%), Postives = 55/129 (42.64%), Query Frame = 3 
Query:    3 RARAAALNIVPTSTXXXXXXXXXXXXXXXXXNGIALRVPTPNXXXXXXXXXXSKKTFAEEVNAAFRESADNELKGILSVCDEPLVSVDFRCXXXXXXXXXXXXXXMGDDMVKVIAWYDNEWGYSQRVVD 389
            R RAA+ +I+P  T                   IA+RVPT N           K   A EVN   +++A     GI+   + PLVS+DF                 G  ++K + W DNEWG++ R++D
Sbjct:  200 RTRAASQSIIPVDTKLAAGITRIFPQFNDRFEAIAVRVPTINVTAIDLSVTVKKPVKASEVNQLLQKAAQGAFHGIVDYTESPLVSIDFNHDPHSAIVDGTQTRVSGAHLIKTLVWCDNEWGFANRMLD 328
[Close]
BLAST of CX300037 vs. ExPASy Swiss-Prot
Match: E4PD_SALPK (D-erythrose-4-phosphate dehydrogenase OS=Salmonella paratyphi A (strain AKU_12601) GN=epd PE=3 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 1.388e-11
Identity = 38/129 (29.46%), Postives = 55/129 (42.64%), Query Frame = 3 
Query:    3 RARAAALNIVPTSTXXXXXXXXXXXXXXXXXNGIALRVPTPNXXXXXXXXXXSKKTFAEEVNAAFRESADNELKGILSVCDEPLVSVDFRCXXXXXXXXXXXXXXMGDDMVKVIAWYDNEWGYSQRVVD 389
            R RAA+ +I+P  T                   IA+RVPT N           K   A EVN   +++A     GI+   + PLVS+DF                 G  ++K + W DNEWG++ R++D
Sbjct:  200 RTRAASQSIIPVDTKLAAGITRIFPQFNDRFEAIAVRVPTINVTAIDLSVTVKKPVKASEVNQLLQKAAQGAFHGIVDYTESPLVSIDFNHDPHSAIVDGTQTRVSGAHLIKTLVWCDNEWGFANRMLD 328
[Close]
BLAST of CX300037 vs. ExPASy Swiss-Prot
Match: E4PD_SALPC (D-erythrose-4-phosphate dehydrogenase OS=Salmonella paratyphi C (strain RKS4594) GN=epd PE=3 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 1.388e-11
Identity = 38/129 (29.46%), Postives = 55/129 (42.64%), Query Frame = 3 
Query:    3 RARAAALNIVPTSTXXXXXXXXXXXXXXXXXNGIALRVPTPNXXXXXXXXXXSKKTFAEEVNAAFRESADNELKGILSVCDEPLVSVDFRCXXXXXXXXXXXXXXMGDDMVKVIAWYDNEWGYSQRVVD 389
            R RAA+ +I+P  T                   IA+RVPT N           K   A EVN   +++A     GI+   + PLVS+DF                 G  ++K + W DNEWG++ R++D
Sbjct:  200 RTRAASQSIIPVDTKLAAGITRIFPQFNDRFEAIAVRVPTINVTAIDLSVTVKKPVKASEVNQLLQKAAQGAFHGIVDYTESPLVSIDFNHDPHSAIVDGTQTRVSGAHLIKTLVWCDNEWGFANRMLD 328
[Close]
BLAST of CX300037 vs. ExPASy Swiss-Prot
Match: E4PD_SALPB (D-erythrose-4-phosphate dehydrogenase OS=Salmonella paratyphi B (strain ATCC BAA-1250 / SPB7) GN=epd PE=3 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 1.388e-11
Identity = 38/129 (29.46%), Postives = 55/129 (42.64%), Query Frame = 3 
Query:    3 RARAAALNIVPTSTXXXXXXXXXXXXXXXXXNGIALRVPTPNXXXXXXXXXXSKKTFAEEVNAAFRESADNELKGILSVCDEPLVSVDFRCXXXXXXXXXXXXXXMGDDMVKVIAWYDNEWGYSQRVVD 389
            R RAA+ +I+P  T                   IA+RVPT N           K   A EVN   +++A     GI+   + PLVS+DF                 G  ++K + W DNEWG++ R++D
Sbjct:  200 RTRAASQSIIPVDTKLAAGITRIFPQFNDRFEAIAVRVPTINVTAIDLSVTVKKTVKASEVNQLLQKAAQGAFHGIVDYTESPLVSIDFNHDPHSAIVDGTQTRVSGAHLIKTLVWCDNEWGFANRMLD 328
[Close]
BLAST of CX300037 vs. ExPASy Swiss-Prot
Match: E4PD_SALPA (D-erythrose-4-phosphate dehydrogenase OS=Salmonella paratyphi A GN=epd PE=3 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 1.388e-11
Identity = 38/129 (29.46%), Postives = 55/129 (42.64%), Query Frame = 3 
Query:    3 RARAAALNIVPTSTXXXXXXXXXXXXXXXXXNGIALRVPTPNXXXXXXXXXXSKKTFAEEVNAAFRESADNELKGILSVCDEPLVSVDFRCXXXXXXXXXXXXXXMGDDMVKVIAWYDNEWGYSQRVVD 389
            R RAA+ +I+P  T                   IA+RVPT N           K   A EVN   +++A     GI+   + PLVS+DF                 G  ++K + W DNEWG++ R++D
Sbjct:  200 RTRAASQSIIPVDTKLAAGITRIFPQFNDRFEAIAVRVPTINVTAIDLSVTVKKPVKASEVNQLLQKAAQGAFHGIVDYTESPLVSIDFNHDPHSAIVDGTQTRVSGAHLIKTLVWCDNEWGFANRMLD 328
[Close]
BLAST of CX300037 vs. ExPASy Swiss-Prot
Match: E4PD_SALNS (D-erythrose-4-phosphate dehydrogenase OS=Salmonella newport (strain SL254) GN=epd PE=3 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 1.388e-11
Identity = 38/129 (29.46%), Postives = 55/129 (42.64%), Query Frame = 3 
Query:    3 RARAAALNIVPTSTXXXXXXXXXXXXXXXXXNGIALRVPTPNXXXXXXXXXXSKKTFAEEVNAAFRESADNELKGILSVCDEPLVSVDFRCXXXXXXXXXXXXXXMGDDMVKVIAWYDNEWGYSQRVVD 389
            R RAA+ +I+P  T                   IA+RVPT N           K   A EVN   +++A     GI+   + PLVS+DF                 G  ++K + W DNEWG++ R++D
Sbjct:  200 RTRAASQSIIPVDTKLAAGITRIFPQFNDRFEAIAVRVPTINVTAIDLSVTVKKPVKASEVNQLLQKAAQGAFHGIVDYTESPLVSIDFNHDPHSAIVDGTQTRVSGAHLIKTLVWCDNEWGFANRMLD 328
[Close]
BLAST of CX300037 vs. ExPASy Swiss-Prot
Match: E4PD_SALHS (D-erythrose-4-phosphate dehydrogenase OS=Salmonella heidelberg (strain SL476) GN=epd PE=3 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 1.388e-11
Identity = 38/129 (29.46%), Postives = 55/129 (42.64%), Query Frame = 3 
Query:    3 RARAAALNIVPTSTXXXXXXXXXXXXXXXXXNGIALRVPTPNXXXXXXXXXXSKKTFAEEVNAAFRESADNELKGILSVCDEPLVSVDFRCXXXXXXXXXXXXXXMGDDMVKVIAWYDNEWGYSQRVVD 389
            R RAA+ +I+P  T                   IA+RVPT N           K   A EVN   +++A     GI+   + PLVS+DF                 G  ++K + W DNEWG++ R++D
Sbjct:  200 RTRAASQSIIPVDTKLAAGITRIFPQFNDRFEAIAVRVPTINVTAIDLSVTVKKPVKASEVNQLLQKAAQGAFHGIVDYTESPLVSIDFNHDPHSAIVDGTQTRVSGAHLIKTLVWCDNEWGFANRMLD 328
[Close]
BLAST of CX300037 vs. ExPASy Swiss-Prot
Match: E4PD_SALG2 (D-erythrose-4-phosphate dehydrogenase OS=Salmonella gallinarum (strain 287/91 / NCTC 13346) GN=epd PE=3 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 1.388e-11
Identity = 38/129 (29.46%), Postives = 55/129 (42.64%), Query Frame = 3 
Query:    3 RARAAALNIVPTSTXXXXXXXXXXXXXXXXXNGIALRVPTPNXXXXXXXXXXSKKTFAEEVNAAFRESADNELKGILSVCDEPLVSVDFRCXXXXXXXXXXXXXXMGDDMVKVIAWYDNEWGYSQRVVD 389
            R RAA+ +I+P  T                   IA+RVPT N           K   A EVN   +++A     GI+   + PLVS+DF                 G  ++K + W DNEWG++ R++D
Sbjct:  200 RTRAASQSIIPVDTKLAAGITRIFPQFNDRFEAIAVRVPTINVTAIDLSVTVKKPVKASEVNQLLQKAAQGAFHGIVDYTESPLVSIDFNHDPHSAIVDGTQTRVSGAHLIKTLVWCDNEWGFANRMLD 328
[Close]
BLAST of CX300037 vs. ExPASy Swiss-Prot
Match: E4PD_SALEP (D-erythrose-4-phosphate dehydrogenase OS=Salmonella enteritidis PT4 (strain P125109) GN=epd PE=3 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 1.388e-11
Identity = 38/129 (29.46%), Postives = 55/129 (42.64%), Query Frame = 3 
Query:    3 RARAAALNIVPTSTXXXXXXXXXXXXXXXXXNGIALRVPTPNXXXXXXXXXXSKKTFAEEVNAAFRESADNELKGILSVCDEPLVSVDFRCXXXXXXXXXXXXXXMGDDMVKVIAWYDNEWGYSQRVVD 389
            R RAA+ +I+P  T                   IA+RVPT N           K   A EVN   +++A     GI+   + PLVS+DF                 G  ++K + W DNEWG++ R++D
Sbjct:  200 RTRAASQSIIPVDTKLAAGITRIFPQFNDRFEAIAVRVPTINVTAIDLSVTVKKPVKASEVNQLLQKAAQGAFHGIVDYTESPLVSIDFNHDPHSAIVDGTQTRVSGAHLIKTLVWCDNEWGFANRMLD 328
[Close]
BLAST of CX300037 vs. ExPASy Swiss-Prot
Match: E4PD_SALDC (D-erythrose-4-phosphate dehydrogenase OS=Salmonella dublin (strain CT_02021853) GN=epd PE=3 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 1.388e-11
Identity = 38/129 (29.46%), Postives = 55/129 (42.64%), Query Frame = 3 
Query:    3 RARAAALNIVPTSTXXXXXXXXXXXXXXXXXNGIALRVPTPNXXXXXXXXXXSKKTFAEEVNAAFRESADNELKGILSVCDEPLVSVDFRCXXXXXXXXXXXXXXMGDDMVKVIAWYDNEWGYSQRVVD 389
            R RAA+ +I+P  T                   IA+RVPT N           K   A EVN   +++A     GI+   + PLVS+DF                 G  ++K + W DNEWG++ R++D
Sbjct:  200 RTRAASQSIIPVDTKLAAGITRIFPQFNDRFEAIAVRVPTINVTAIDLSVTVKKPVKASEVNQLLQKAAQGAFHGIVDYTESPLVSIDFNHDPHSAIVDGTQTRVSGAHLIKTLVWCDNEWGFANRMLD 328
The following BLAST results are available for this feature:
BLAST of CX300037 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 270
Match NameE-valueIdentityDescription
E4PD_SALSV1.388e-1129.46D-erythrose-4-phosphate dehydrogenase OS=Salmonell... [more]
E4PD_SALPK1.388e-1129.46D-erythrose-4-phosphate dehydrogenase OS=Salmonell... [more]
E4PD_SALPC1.388e-1129.46D-erythrose-4-phosphate dehydrogenase OS=Salmonell... [more]
E4PD_SALPB1.388e-1129.46D-erythrose-4-phosphate dehydrogenase OS=Salmonell... [more]
E4PD_SALPA1.388e-1129.46D-erythrose-4-phosphate dehydrogenase OS=Salmonell... [more]
E4PD_SALNS1.388e-1129.46D-erythrose-4-phosphate dehydrogenase OS=Salmonell... [more]
E4PD_SALHS1.388e-1129.46D-erythrose-4-phosphate dehydrogenase OS=Salmonell... [more]
E4PD_SALG21.388e-1129.46D-erythrose-4-phosphate dehydrogenase OS=Salmonell... [more]
E4PD_SALEP1.388e-1129.46D-erythrose-4-phosphate dehydrogenase OS=Salmonell... [more]
E4PD_SALDC1.388e-1129.46D-erythrose-4-phosphate dehydrogenase OS=Salmonell... [more]

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Properties
Property NameValue
Genbank descriptionC07005D01SK SaltLeaf1 Citrus clementina cDNA clone C07005D01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX300037 ID=CX300037; Name=CX300037; organism=Citrus clementina; type=EST; length=555bp
GGCGTGCAAGAGCAGCTGCACTCAACATTGTCCCAACATCAACTGGTGCG
GCAAAAGCTGTGGCCCTTGTCCTCCCAGCACTCAAAGGCAAACTAAACGG
CATTGCCCTTCGTGTGCCAACACCAAACGTCTCGGTTGTTGATCTTGTCG
TTCAGGTGTCGAAGAAAACCTTCGCAGAAGAGGTGAACGCCGCTTTCAGA
GAAAGCGCTGACAATGAACTGAAAGGGATCCTCTCCGTGTGCGACGAGCC
CCTCGTTTCGGTCGACTTCAGGTGCTCTGATGTATCCTCAACCGTTGATT
CATCTCTCACACTTGTCATGGGAGACGACATGGTTAAGGTGATTGCATGG
TATGACAATGAATGGGGTTACTCTCAAAGGGTTGTGGATTTGGCCGACAT
TGTTGCCAACAACTGGAAGTGAAGTAAATACTAAAATCGGAACTCGGCTG
TAATCGGCACAACGATGTTCTTGTTTTTCATTTTTGGTTCCCCCATTTAT
TGTTCTGCGTCTTAAAATTTGTAGAATGTATAACACTATCTTATTATGGA
ACCTT
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