CX300037

Overview
NameCX300037
Unique NameCX300037
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length555
Libraries
Library NameType
SaltLeaf1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of CX300037 vs. ExPASy Swiss-Prot
Match: E4PD_SHISS (D-erythrose-4-phosphate dehydrogenase OS=Shigella sonnei (strain Ss046) GN=epd PE=3 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 2.367e-11
Identity = 39/129 (30.23%), Postives = 55/129 (42.64%), Query Frame = 3 
Query:    3 RARAAALNIVPTSTXXXXXXXXXXXXXXXXXNGIALRVPTPNXXXXXXXXXXSKKTFAEEVNAAFRESADNELKGILSVCDEPLVSVDFRCXXXXXXXXXXXXXXMGDDMVKVIAWYDNEWGYSQRVVD 389
            R RAA+ +I+P  T                   IA+RVPT N           K   A EVN   +++A     GI+   + PLVSVDF                 G  ++K + W DNEWG++ R++D
Sbjct:  200 RTRAASQSIIPVDTKLAAGITRFFPQFNDRFEAIAVRVPTINVTAIDLSVTVKKPVKANEVNLLLQKAAQGAFHGIVDYTELPLVSVDFNHDPHSAIVDGTQTRVSGAHLIKTLVWCDNEWGFANRMLD 328
[Close]
BLAST of CX300037 vs. ExPASy Swiss-Prot
Match: E4PD_SHIFL (D-erythrose-4-phosphate dehydrogenase OS=Shigella flexneri GN=epd PE=3 SV=2)

HSP 1 Score: 68.5514 bits (166), Expect = 2.367e-11
Identity = 39/129 (30.23%), Postives = 55/129 (42.64%), Query Frame = 3 
Query:    3 RARAAALNIVPTSTXXXXXXXXXXXXXXXXXNGIALRVPTPNXXXXXXXXXXSKKTFAEEVNAAFRESADNELKGILSVCDEPLVSVDFRCXXXXXXXXXXXXXXMGDDMVKVIAWYDNEWGYSQRVVD 389
            R RAA+ +I+P  T                   IA+RVPT N           K   A EVN   +++A     GI+   + PLVSVDF                 G  ++K + W DNEWG++ R++D
Sbjct:  200 RTRAASQSIIPVDTKLAAGITRFFPQFNDRFEAIAVRVPTINVTAIDLSVTVKKPVKANEVNLLLQKAAQGAFHGIVDYTELPLVSVDFNHDPHSAIVDGTQTRVSGAHLIKTLVWCDNEWGFANRMLD 328
[Close]
BLAST of CX300037 vs. ExPASy Swiss-Prot
Match: E4PD_SHIF8 (D-erythrose-4-phosphate dehydrogenase OS=Shigella flexneri serotype 5b (strain 8401) GN=epd PE=3 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 2.367e-11
Identity = 39/129 (30.23%), Postives = 55/129 (42.64%), Query Frame = 3 
Query:    3 RARAAALNIVPTSTXXXXXXXXXXXXXXXXXNGIALRVPTPNXXXXXXXXXXSKKTFAEEVNAAFRESADNELKGILSVCDEPLVSVDFRCXXXXXXXXXXXXXXMGDDMVKVIAWYDNEWGYSQRVVD 389
            R RAA+ +I+P  T                   IA+RVPT N           K   A EVN   +++A     GI+   + PLVSVDF                 G  ++K + W DNEWG++ R++D
Sbjct:  200 RTRAASQSIIPVDTKLAAGITRFFPQFNDRFEAIAVRVPTINVTAIDLSVTVKKPVKANEVNLLLQKAAQGAFHGIVDYTELPLVSVDFNHDPHSAIVDGTQTRVSGAHLIKTLVWCDNEWGFANRMLD 328
[Close]
BLAST of CX300037 vs. ExPASy Swiss-Prot
Match: E4PD_SHIBS (D-erythrose-4-phosphate dehydrogenase OS=Shigella boydii serotype 4 (strain Sb227) GN=epd PE=3 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 2.367e-11
Identity = 39/129 (30.23%), Postives = 55/129 (42.64%), Query Frame = 3 
Query:    3 RARAAALNIVPTSTXXXXXXXXXXXXXXXXXNGIALRVPTPNXXXXXXXXXXSKKTFAEEVNAAFRESADNELKGILSVCDEPLVSVDFRCXXXXXXXXXXXXXXMGDDMVKVIAWYDNEWGYSQRVVD 389
            R RAA+ +I+P  T                   IA+RVPT N           K   A EVN   +++A     GI+   + PLVSVDF                 G  ++K + W DNEWG++ R++D
Sbjct:  200 RTRAASQSIIPVDTKLAAGITRFFPQFNDRFEAIAVRVPTINVTAIDLSVTVKKPVKANEVNLLLQKAAQGAFHGIVDYTELPLVSVDFNHDPHSAIVDGTQTRVSGAHLIKTLVWCDNEWGFANRMLD 328
[Close]
BLAST of CX300037 vs. ExPASy Swiss-Prot
Match: E4PD_SHIB3 (D-erythrose-4-phosphate dehydrogenase OS=Shigella boydii serotype 18 (strain CDC 3083-94 / BS512) GN=epd PE=3 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 2.367e-11
Identity = 39/129 (30.23%), Postives = 55/129 (42.64%), Query Frame = 3 
Query:    3 RARAAALNIVPTSTXXXXXXXXXXXXXXXXXNGIALRVPTPNXXXXXXXXXXSKKTFAEEVNAAFRESADNELKGILSVCDEPLVSVDFRCXXXXXXXXXXXXXXMGDDMVKVIAWYDNEWGYSQRVVD 389
            R RAA+ +I+P  T                   IA+RVPT N           K   A EVN   +++A     GI+   + PLVSVDF                 G  ++K + W DNEWG++ R++D
Sbjct:  200 RTRAASQSIIPVDTKLAAGITRFFPQFNDRFEAIAVRVPTINVTAIDLSVTVKKPVKANEVNLLLQKAAQGAFHGIVDYTELPLVSVDFNHDPHSAIVDGTQTRVSGAHLIKTLVWCDNEWGFANRMLD 328
[Close]
BLAST of CX300037 vs. ExPASy Swiss-Prot
Match: E4PD_ESCF3 (D-erythrose-4-phosphate dehydrogenase OS=Escherichia fergusonii (strain ATCC 35469 / DSM 13698 / CDC 0568-73) GN=epd PE=3 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 2.367e-11
Identity = 39/129 (30.23%), Postives = 55/129 (42.64%), Query Frame = 3 
Query:    3 RARAAALNIVPTSTXXXXXXXXXXXXXXXXXNGIALRVPTPNXXXXXXXXXXSKKTFAEEVNAAFRESADNELKGILSVCDEPLVSVDFRCXXXXXXXXXXXXXXMGDDMVKVIAWYDNEWGYSQRVVD 389
            R RAA+ +I+P  T                   IA+RVPT N           K   A EVN   +++A     GI+   + PLVSVDF                 G  ++K + W DNEWG++ R++D
Sbjct:  200 RTRAASQSIIPVDTKLAAGITRFFPQFNDRFEAIAVRVPTINVTAIDLSVTVKKPVKANEVNLLLQKAAQGAFHGIVDYTELPLVSVDFNHDPHSAIVDGTQTRVSGAHLIKTLVWCDNEWGFANRMLD 328
[Close]
BLAST of CX300037 vs. ExPASy Swiss-Prot
Match: E4PD_ECOUT (D-erythrose-4-phosphate dehydrogenase OS=Escherichia coli (strain UTI89 / UPEC) GN=epd PE=3 SV=2)

HSP 1 Score: 68.5514 bits (166), Expect = 2.367e-11
Identity = 39/129 (30.23%), Postives = 55/129 (42.64%), Query Frame = 3 
Query:    3 RARAAALNIVPTSTXXXXXXXXXXXXXXXXXNGIALRVPTPNXXXXXXXXXXSKKTFAEEVNAAFRESADNELKGILSVCDEPLVSVDFRCXXXXXXXXXXXXXXMGDDMVKVIAWYDNEWGYSQRVVD 389
            R RAA+ +I+P  T                   IA+RVPT N           K   A EVN   +++A     GI+   + PLVSVDF                 G  ++K + W DNEWG++ R++D
Sbjct:  200 RTRAASQSIIPVDTKLAAGITRFFPQFNDRFEAIAVRVPTINVTAIDLSVTVKKPVKANEVNLLLQKAAQGAFHGIVDYTELPLVSVDFNHDPHSAIVDGTQTRVSGAHLIKTLVWCDNEWGFANRMLD 328
[Close]
BLAST of CX300037 vs. ExPASy Swiss-Prot
Match: E4PD_ECOSM (D-erythrose-4-phosphate dehydrogenase OS=Escherichia coli (strain SMS-3-5 / SECEC) GN=epd PE=3 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 2.367e-11
Identity = 39/129 (30.23%), Postives = 55/129 (42.64%), Query Frame = 3 
Query:    3 RARAAALNIVPTSTXXXXXXXXXXXXXXXXXNGIALRVPTPNXXXXXXXXXXSKKTFAEEVNAAFRESADNELKGILSVCDEPLVSVDFRCXXXXXXXXXXXXXXMGDDMVKVIAWYDNEWGYSQRVVD 389
            R RAA+ +I+P  T                   IA+RVPT N           K   A EVN   +++A     GI+   + PLVSVDF                 G  ++K + W DNEWG++ R++D
Sbjct:  200 RTRAASQSIIPVDTKLAAGITRFFPQFNDRFEAIAVRVPTINVTAIDLSVTVKKPVKANEVNLLLQKAAQGAFHGIVDYTELPLVSVDFNHDPHSAIVDGTQTRVSGAHLIKTLVWCDNEWGFANRMLD 328
[Close]
BLAST of CX300037 vs. ExPASy Swiss-Prot
Match: E4PD_ECOSE (D-erythrose-4-phosphate dehydrogenase OS=Escherichia coli (strain SE11) GN=epd PE=3 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 2.367e-11
Identity = 39/129 (30.23%), Postives = 55/129 (42.64%), Query Frame = 3 
Query:    3 RARAAALNIVPTSTXXXXXXXXXXXXXXXXXNGIALRVPTPNXXXXXXXXXXSKKTFAEEVNAAFRESADNELKGILSVCDEPLVSVDFRCXXXXXXXXXXXXXXMGDDMVKVIAWYDNEWGYSQRVVD 389
            R RAA+ +I+P  T                   IA+RVPT N           K   A EVN   +++A     GI+   + PLVSVDF                 G  ++K + W DNEWG++ R++D
Sbjct:  200 RTRAASQSIIPVDTKLAAGITRFFPQFNDRFEAIAVRVPTINVTAIDLSVTVKKPVKANEVNLLLQKAAQGAFHGIVDYTELPLVSVDFNHDPHSAIVDGTQTRVSGAHLIKTLVWCDNEWGFANRMLD 328
[Close]
BLAST of CX300037 vs. ExPASy Swiss-Prot
Match: E4PD_ECOLU (D-erythrose-4-phosphate dehydrogenase OS=Escherichia coli O17:K52:H18 (strain UMN026 / ExPEC) GN=epd PE=3 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 2.367e-11
Identity = 39/129 (30.23%), Postives = 55/129 (42.64%), Query Frame = 3 
Query:    3 RARAAALNIVPTSTXXXXXXXXXXXXXXXXXNGIALRVPTPNXXXXXXXXXXSKKTFAEEVNAAFRESADNELKGILSVCDEPLVSVDFRCXXXXXXXXXXXXXXMGDDMVKVIAWYDNEWGYSQRVVD 389
            R RAA+ +I+P  T                   IA+RVPT N           K   A EVN   +++A     GI+   + PLVSVDF                 G  ++K + W DNEWG++ R++D
Sbjct:  200 RTRAASQSIIPVDTKLAAGITRFFPQFNDRFEAIAVRVPTINVTAIDLSVTVKKPVKANEVNLLLQKAAQGAFHGIVDYTELPLVSVDFNHDPHSAIVDGTQTRVSGAHLIKTLVWCDNEWGFANRMLD 328
The following BLAST results are available for this feature:
BLAST of CX300037 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 270
Match NameE-valueIdentityDescription
E4PD_SHISS2.367e-1130.23D-erythrose-4-phosphate dehydrogenase OS=Shigella ... [more]
E4PD_SHIFL2.367e-1130.23D-erythrose-4-phosphate dehydrogenase OS=Shigella ... [more]
E4PD_SHIF82.367e-1130.23D-erythrose-4-phosphate dehydrogenase OS=Shigella ... [more]
E4PD_SHIBS2.367e-1130.23D-erythrose-4-phosphate dehydrogenase OS=Shigella ... [more]
E4PD_SHIB32.367e-1130.23D-erythrose-4-phosphate dehydrogenase OS=Shigella ... [more]
E4PD_ESCF32.367e-1130.23D-erythrose-4-phosphate dehydrogenase OS=Escherich... [more]
E4PD_ECOUT2.367e-1130.23D-erythrose-4-phosphate dehydrogenase OS=Escherich... [more]
E4PD_ECOSM2.367e-1130.23D-erythrose-4-phosphate dehydrogenase OS=Escherich... [more]
E4PD_ECOSE2.367e-1130.23D-erythrose-4-phosphate dehydrogenase OS=Escherich... [more]
E4PD_ECOLU2.367e-1130.23D-erythrose-4-phosphate dehydrogenase OS=Escherich... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionC07005D01SK SaltLeaf1 Citrus clementina cDNA clone C07005D01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX300037 ID=CX300037; Name=CX300037; organism=Citrus clementina; type=EST; length=555bp
GGCGTGCAAGAGCAGCTGCACTCAACATTGTCCCAACATCAACTGGTGCG
GCAAAAGCTGTGGCCCTTGTCCTCCCAGCACTCAAAGGCAAACTAAACGG
CATTGCCCTTCGTGTGCCAACACCAAACGTCTCGGTTGTTGATCTTGTCG
TTCAGGTGTCGAAGAAAACCTTCGCAGAAGAGGTGAACGCCGCTTTCAGA
GAAAGCGCTGACAATGAACTGAAAGGGATCCTCTCCGTGTGCGACGAGCC
CCTCGTTTCGGTCGACTTCAGGTGCTCTGATGTATCCTCAACCGTTGATT
CATCTCTCACACTTGTCATGGGAGACGACATGGTTAAGGTGATTGCATGG
TATGACAATGAATGGGGTTACTCTCAAAGGGTTGTGGATTTGGCCGACAT
TGTTGCCAACAACTGGAAGTGAAGTAAATACTAAAATCGGAACTCGGCTG
TAATCGGCACAACGATGTTCTTGTTTTTCATTTTTGGTTCCCCCATTTAT
TGTTCTGCGTCTTAAAATTTGTAGAATGTATAACACTATCTTATTATGGA
ACCTT
back to top