CX300037

Overview
NameCX300037
Unique NameCX300037
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length555
Libraries
Library NameType
SaltLeaf1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of CX300037 vs. ExPASy Swiss-Prot
Match: E4PD_ECOLI (D-erythrose-4-phosphate dehydrogenase OS=Escherichia coli (strain K12) GN=epd PE=1 SV=2)

HSP 1 Score: 68.5514 bits (166), Expect = 2.367e-11
Identity = 39/129 (30.23%), Postives = 55/129 (42.64%), Query Frame = 3 
Query:    3 RARAAALNIVPTSTXXXXXXXXXXXXXXXXXNGIALRVPTPNXXXXXXXXXXSKKTFAEEVNAAFRESADNELKGILSVCDEPLVSVDFRCXXXXXXXXXXXXXXMGDDMVKVIAWYDNEWGYSQRVVD 389
            R RAA+ +I+P  T                   IA+RVPT N           K   A EVN   +++A     GI+   + PLVSVDF                 G  ++K + W DNEWG++ R++D
Sbjct:  200 RTRAASQSIIPVDTKLAAGITRFFPQFNDRFEAIAVRVPTINVTAIDLSVTVKKPVKANEVNLLLQKAAQGAFHGIVDYTELPLVSVDFNHDPHSAIVDGTQTRVSGAHLIKTLVWCDNEWGFANRMLD 328
[Close]
BLAST of CX300037 vs. ExPASy Swiss-Prot
Match: E4PD_ECOLC (D-erythrose-4-phosphate dehydrogenase OS=Escherichia coli (strain ATCC 8739 / DSM 1576 / Crooks) GN=epd PE=3 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 2.367e-11
Identity = 39/129 (30.23%), Postives = 55/129 (42.64%), Query Frame = 3 
Query:    3 RARAAALNIVPTSTXXXXXXXXXXXXXXXXXNGIALRVPTPNXXXXXXXXXXSKKTFAEEVNAAFRESADNELKGILSVCDEPLVSVDFRCXXXXXXXXXXXXXXMGDDMVKVIAWYDNEWGYSQRVVD 389
            R RAA+ +I+P  T                   IA+RVPT N           K   A EVN   +++A     GI+   + PLVSVDF                 G  ++K + W DNEWG++ R++D
Sbjct:  200 RTRAASQSIIPVDTKLAAGITRFFPQFNDRFEAIAVRVPTINVTAIDLSVTVKKPVKANEVNLLLQKAAQGAFHGIVDYTELPLVSVDFNHDPHSAIVDGTQTRVSGAHLIKTLVWCDNEWGFANRMLD 328
[Close]
BLAST of CX300037 vs. ExPASy Swiss-Prot
Match: E4PD_ECOL6 (D-erythrose-4-phosphate dehydrogenase OS=Escherichia coli O6 GN=epd PE=3 SV=2)

HSP 1 Score: 68.5514 bits (166), Expect = 2.367e-11
Identity = 39/129 (30.23%), Postives = 55/129 (42.64%), Query Frame = 3 
Query:    3 RARAAALNIVPTSTXXXXXXXXXXXXXXXXXNGIALRVPTPNXXXXXXXXXXSKKTFAEEVNAAFRESADNELKGILSVCDEPLVSVDFRCXXXXXXXXXXXXXXMGDDMVKVIAWYDNEWGYSQRVVD 389
            R RAA+ +I+P  T                   IA+RVPT N           K   A EVN   +++A     GI+   + PLVSVDF                 G  ++K + W DNEWG++ R++D
Sbjct:  200 RTRAASQSIIPVDTKLAAGITRFFPQFNDRFEAIAVRVPTINVTAIDLSVTVKKPVKANEVNLLLQKAAQGAFHGIVDYTELPLVSVDFNHDPHSAIVDGTQTRVSGAHLIKTLVWCDNEWGFANRMLD 328
[Close]
BLAST of CX300037 vs. ExPASy Swiss-Prot
Match: E4PD_ECOL5 (D-erythrose-4-phosphate dehydrogenase OS=Escherichia coli O6:K15:H31 (strain 536 / UPEC) GN=epd PE=3 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 2.367e-11
Identity = 39/129 (30.23%), Postives = 55/129 (42.64%), Query Frame = 3 
Query:    3 RARAAALNIVPTSTXXXXXXXXXXXXXXXXXNGIALRVPTPNXXXXXXXXXXSKKTFAEEVNAAFRESADNELKGILSVCDEPLVSVDFRCXXXXXXXXXXXXXXMGDDMVKVIAWYDNEWGYSQRVVD 389
            R RAA+ +I+P  T                   IA+RVPT N           K   A EVN   +++A     GI+   + PLVSVDF                 G  ++K + W DNEWG++ R++D
Sbjct:  200 RTRAASQSIIPVDTKLAAGITRFFPQFNDRFEAIAVRVPTINVTAIDLSVTVKKPVKANEVNLLLQKAAQGAFHGIVDYTELPLVSVDFNHDPHSAIVDGTQTRVSGAHLIKTLVWCDNEWGFANRMLD 328
[Close]
BLAST of CX300037 vs. ExPASy Swiss-Prot
Match: E4PD_ECOHS (D-erythrose-4-phosphate dehydrogenase OS=Escherichia coli O9:H4 (strain HS) GN=epd PE=3 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 2.367e-11
Identity = 39/129 (30.23%), Postives = 55/129 (42.64%), Query Frame = 3 
Query:    3 RARAAALNIVPTSTXXXXXXXXXXXXXXXXXNGIALRVPTPNXXXXXXXXXXSKKTFAEEVNAAFRESADNELKGILSVCDEPLVSVDFRCXXXXXXXXXXXXXXMGDDMVKVIAWYDNEWGYSQRVVD 389
            R RAA+ +I+P  T                   IA+RVPT N           K   A EVN   +++A     GI+   + PLVSVDF                 G  ++K + W DNEWG++ R++D
Sbjct:  200 RTRAASQSIIPVDTKLAAGITRFFPQFNDRFEAIAVRVPTINVTAIDLSVTVKKPVKANEVNLLLQKAAQGAFHGIVDYTELPLVSVDFNHDPHSAIVDGTQTRVSGAHLIKTLVWCDNEWGFANRMLD 328
[Close]
BLAST of CX300037 vs. ExPASy Swiss-Prot
Match: E4PD_ECODH (D-erythrose-4-phosphate dehydrogenase OS=Escherichia coli (strain K12 / DH10B) GN=epd PE=3 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 2.367e-11
Identity = 39/129 (30.23%), Postives = 55/129 (42.64%), Query Frame = 3 
Query:    3 RARAAALNIVPTSTXXXXXXXXXXXXXXXXXNGIALRVPTPNXXXXXXXXXXSKKTFAEEVNAAFRESADNELKGILSVCDEPLVSVDFRCXXXXXXXXXXXXXXMGDDMVKVIAWYDNEWGYSQRVVD 389
            R RAA+ +I+P  T                   IA+RVPT N           K   A EVN   +++A     GI+   + PLVSVDF                 G  ++K + W DNEWG++ R++D
Sbjct:  200 RTRAASQSIIPVDTKLAAGITRFFPQFNDRFEAIAVRVPTINVTAIDLSVTVKKPVKANEVNLLLQKAAQGAFHGIVDYTELPLVSVDFNHDPHSAIVDGTQTRVSGAHLIKTLVWCDNEWGFANRMLD 328
[Close]
BLAST of CX300037 vs. ExPASy Swiss-Prot
Match: E4PD_ECOBW (D-erythrose-4-phosphate dehydrogenase OS=Escherichia coli (strain K12 / BW2952) GN=epd PE=3 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 2.367e-11
Identity = 39/129 (30.23%), Postives = 55/129 (42.64%), Query Frame = 3 
Query:    3 RARAAALNIVPTSTXXXXXXXXXXXXXXXXXNGIALRVPTPNXXXXXXXXXXSKKTFAEEVNAAFRESADNELKGILSVCDEPLVSVDFRCXXXXXXXXXXXXXXMGDDMVKVIAWYDNEWGYSQRVVD 389
            R RAA+ +I+P  T                   IA+RVPT N           K   A EVN   +++A     GI+   + PLVSVDF                 G  ++K + W DNEWG++ R++D
Sbjct:  200 RTRAASQSIIPVDTKLAAGITRFFPQFNDRFEAIAVRVPTINVTAIDLSVTVKKPVKANEVNLLLQKAAQGAFHGIVDYTELPLVSVDFNHDPHSAIVDGTQTRVSGAHLIKTLVWCDNEWGFANRMLD 328
[Close]
BLAST of CX300037 vs. ExPASy Swiss-Prot
Match: E4PD_ECO8A (D-erythrose-4-phosphate dehydrogenase OS=Escherichia coli O8 (strain IAI1) GN=epd PE=3 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 2.367e-11
Identity = 39/129 (30.23%), Postives = 55/129 (42.64%), Query Frame = 3 
Query:    3 RARAAALNIVPTSTXXXXXXXXXXXXXXXXXNGIALRVPTPNXXXXXXXXXXSKKTFAEEVNAAFRESADNELKGILSVCDEPLVSVDFRCXXXXXXXXXXXXXXMGDDMVKVIAWYDNEWGYSQRVVD 389
            R RAA+ +I+P  T                   IA+RVPT N           K   A EVN   +++A     GI+   + PLVSVDF                 G  ++K + W DNEWG++ R++D
Sbjct:  200 RTRAASQSIIPVDTKLAAGITRFFPQFNDRFEAIAVRVPTINVTAIDLSVTVKKPVKANEVNLLLQKAAQGAFHGIVDYTELPLVSVDFNHDPHSAIVDGTQTRVSGAHLIKTLVWCDNEWGFANRMLD 328
[Close]
BLAST of CX300037 vs. ExPASy Swiss-Prot
Match: E4PD_ECO81 (D-erythrose-4-phosphate dehydrogenase OS=Escherichia coli O81 (strain ED1a) GN=epd PE=3 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 2.367e-11
Identity = 39/129 (30.23%), Postives = 55/129 (42.64%), Query Frame = 3 
Query:    3 RARAAALNIVPTSTXXXXXXXXXXXXXXXXXNGIALRVPTPNXXXXXXXXXXSKKTFAEEVNAAFRESADNELKGILSVCDEPLVSVDFRCXXXXXXXXXXXXXXMGDDMVKVIAWYDNEWGYSQRVVD 389
            R RAA+ +I+P  T                   IA+RVPT N           K   A EVN   +++A     GI+   + PLVSVDF                 G  ++K + W DNEWG++ R++D
Sbjct:  200 RTRAASQSIIPVDTKLAAGITRFFPQFNDRFEAIAVRVPTINVTAIDLSVTVKKPVKANEVNLLLQKAAQGAFHGIVDYTELPLVSVDFNHDPHSAIVDGTQTRVSGAHLIKTLVWCDNEWGFANRMLD 328
[Close]
BLAST of CX300037 vs. ExPASy Swiss-Prot
Match: E4PD_ECO7I (D-erythrose-4-phosphate dehydrogenase OS=Escherichia coli O7:K1 (strain IAI39 / ExPEC) GN=epd PE=3 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 2.367e-11
Identity = 39/129 (30.23%), Postives = 55/129 (42.64%), Query Frame = 3 
Query:    3 RARAAALNIVPTSTXXXXXXXXXXXXXXXXXNGIALRVPTPNXXXXXXXXXXSKKTFAEEVNAAFRESADNELKGILSVCDEPLVSVDFRCXXXXXXXXXXXXXXMGDDMVKVIAWYDNEWGYSQRVVD 389
            R RAA+ +I+P  T                   IA+RVPT N           K   A EVN   +++A     GI+   + PLVSVDF                 G  ++K + W DNEWG++ R++D
Sbjct:  200 RTRAASQSIIPVDTKLAAGITRFFPQFNDRFEAIAVRVPTINVTAIDLSVTVKKPVKANEVNLLLQKAAQGAFHGIVDYTELPLVSVDFNHDPHSAIVDGTQTRVSGAHLIKTLVWCDNEWGFANRMLD 328
The following BLAST results are available for this feature:
BLAST of CX300037 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 270
Match NameE-valueIdentityDescription
E4PD_ECOLI2.367e-1130.23D-erythrose-4-phosphate dehydrogenase OS=Escherich... [more]
E4PD_ECOLC2.367e-1130.23D-erythrose-4-phosphate dehydrogenase OS=Escherich... [more]
E4PD_ECOL62.367e-1130.23D-erythrose-4-phosphate dehydrogenase OS=Escherich... [more]
E4PD_ECOL52.367e-1130.23D-erythrose-4-phosphate dehydrogenase OS=Escherich... [more]
E4PD_ECOHS2.367e-1130.23D-erythrose-4-phosphate dehydrogenase OS=Escherich... [more]
E4PD_ECODH2.367e-1130.23D-erythrose-4-phosphate dehydrogenase OS=Escherich... [more]
E4PD_ECOBW2.367e-1130.23D-erythrose-4-phosphate dehydrogenase OS=Escherich... [more]
E4PD_ECO8A2.367e-1130.23D-erythrose-4-phosphate dehydrogenase OS=Escherich... [more]
E4PD_ECO812.367e-1130.23D-erythrose-4-phosphate dehydrogenase OS=Escherich... [more]
E4PD_ECO7I2.367e-1130.23D-erythrose-4-phosphate dehydrogenase OS=Escherich... [more]

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Properties
Property NameValue
Genbank descriptionC07005D01SK SaltLeaf1 Citrus clementina cDNA clone C07005D01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX300037 ID=CX300037; Name=CX300037; organism=Citrus clementina; type=EST; length=555bp
GGCGTGCAAGAGCAGCTGCACTCAACATTGTCCCAACATCAACTGGTGCG
GCAAAAGCTGTGGCCCTTGTCCTCCCAGCACTCAAAGGCAAACTAAACGG
CATTGCCCTTCGTGTGCCAACACCAAACGTCTCGGTTGTTGATCTTGTCG
TTCAGGTGTCGAAGAAAACCTTCGCAGAAGAGGTGAACGCCGCTTTCAGA
GAAAGCGCTGACAATGAACTGAAAGGGATCCTCTCCGTGTGCGACGAGCC
CCTCGTTTCGGTCGACTTCAGGTGCTCTGATGTATCCTCAACCGTTGATT
CATCTCTCACACTTGTCATGGGAGACGACATGGTTAAGGTGATTGCATGG
TATGACAATGAATGGGGTTACTCTCAAAGGGTTGTGGATTTGGCCGACAT
TGTTGCCAACAACTGGAAGTGAAGTAAATACTAAAATCGGAACTCGGCTG
TAATCGGCACAACGATGTTCTTGTTTTTCATTTTTGGTTCCCCCATTTAT
TGTTCTGCGTCTTAAAATTTGTAGAATGTATAACACTATCTTATTATGGA
ACCTT
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