CX300037

Overview
NameCX300037
Unique NameCX300037
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length555
Libraries
Library NameType
SaltLeaf1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig5796 contig Ccv1_Contig5796:899..1453. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX300037 vs. ExPASy Swiss-Prot
Match: G3P_ERYGR (Glyceraldehyde-3-phosphate dehydrogenase OS=Erysiphe graminis subsp. hordei GN=GPD PE=3 SV=1)

HSP 1 Score: 86.2705 bits (212), Expect = 1.097e-16
Identity = 46/133 (34.59%), Postives = 65/133 (48.87%), Query Frame = 3
Query:    9 RAAALNIVPTSTXXXXXXXXXXXXXXXXXNGIALRVPTPNXXXXXXXXXXSKKTFAEEVNAAFRESADNELKGILSVCDEPLVSVDFRCXXXXXXXXXXXXXXMGDDMVKVIAWYDNEWGYSQRVVDLADIVA 407
            R AA NI+P+ST                  G+A+RVPT N           K    +E+  A + +A NEL+GILS  ++ +VS D                 + D+ VK++AWYDNEW YS+RV+DL   +A
Sbjct:  200 RTAAQNIIPSSTGAAKAVGKVIPALNGKLTGMAMRVPTANVSVVDLTCRIEKSATYDEIKKAIKIAAGNELQGILSYTEDEIVSTDLIGNNHSSIFDAKAGISLNDNFVKLVAWYDNEWAYSRRVIDLISYIA 332          
BLAST of CX300037 vs. ExPASy Swiss-Prot
Match: G3P_COCP7 (Glyceraldehyde-3-phosphate dehydrogenase OS=Coccidioides posadasii (strain C735) GN=GPD PE=3 SV=1)

HSP 1 Score: 86.2705 bits (212), Expect = 1.097e-16
Identity = 44/133 (33.08%), Postives = 66/133 (49.62%), Query Frame = 3
Query:    9 RAAALNIVPTSTXXXXXXXXXXXXXXXXXNGIALRVPTPNXXXXXXXXXXSKKTFAEEVNAAFRESADNELKGILSVCDEPLVSVDFRCXXXXXXXXXXXXXXMGDDMVKVIAWYDNEWGYSQRVVDLADIVA 407
            R AA NI+P+ST                  G+++RVPT N           K    +++  A ++++ NELKGI+S  ++ LVS D                 + D  +K++AWYDNEWGYS+RV+DL   +A
Sbjct:  199 RTAAQNIIPSSTGAAKAVGKVIPSLNGKLTGMSMRVPTSNVSVVDLTCRTDKSVTYDQIKEAMKKASANELKGIMSYSEDALVSSDLNGDPHSCIFDATAGIALNDHFIKLVAWYDNEWGYSRRVIDLIAYIA 331          
BLAST of CX300037 vs. ExPASy Swiss-Prot
Match: G3PC_MESCR (Glyceraldehyde-3-phosphate dehydrogenase, cytosolic OS=Mesembryanthemum crystallinum GN=GAPC PE=2 SV=1)

HSP 1 Score: 86.2705 bits (212), Expect = 1.097e-16
Identity = 46/128 (35.94%), Postives = 64/128 (50.00%), Query Frame = 3
Query:    9 RAAALNIVPTSTXXXXXXXXXXXXXXXXXNGIALRVPTPNXXXXXXXXXXSKKTFAEEVNAAFRESADNELKGILSVCDEPLVSVDFRCXXXXXXXXXXXXXXMGDDMVKVIAWYDNEWGYSQRVVDL 392
            RAA+ NI+P+ST                  G+A RVPT +           K    E++ AA +E ++ +LKGIL   ++ LVS DF                + D+ VK+++WYDNEWGYS RVVDL
Sbjct:  202 RAASFNIIPSSTGAAKAVGKVLPALNGKLTGMAFRVPTCDVSVVDLTVRIEKAASYEQIKAAIKEESEGKLKGILGYTEDDLVSTDFIGDNRSSIFDAKAGISLNDNFVKLVSWYDNEWGYSTRVVDL 329          
BLAST of CX300037 vs. ExPASy Swiss-Prot
Match: G3P2_DROME (Glyceraldehyde-3-phosphate dehydrogenase 2 OS=Drosophila melanogaster GN=Gapdh2 PE=1 SV=2)

HSP 1 Score: 86.2705 bits (212), Expect = 1.097e-16
Identity = 48/128 (37.50%), Postives = 61/128 (47.66%), Query Frame = 3
Query:    9 RAAALNIVPTSTXXXXXXXXXXXXXXXXXNGIALRVPTPNXXXXXXXXXXSKKTFAEEVNAAFRESADNELKGILSVCDEPLVSVDFRCXXXXXXXXXXXXXXMGDDMVKVIAWYDNEWGYSQRVVDL 392
            R AA NI+P ST                  G+A RVPTPN           K    +E+ A  +E+A+  LKGIL   DE +VS DF                + D  VK+I+WYDNE+GYS RV+DL
Sbjct:  197 RGAAQNIIPASTGAAKAVGKVIPALNGKLTGMAFRVPTPNVSVVDLTVRLGKGASYDEIKAKVQEAANGPLKGILGYTDEEVVSTDFLSDTHSSVFDAKAGISLNDKFVKLISWYDNEFGYSNRVIDL 324          
BLAST of CX300037 vs. ExPASy Swiss-Prot
Match: G3PC_CRAPL (Glyceraldehyde-3-phosphate dehydrogenase, cytosolic OS=Craterostigma plantagineum GN=GAPC PE=2 SV=1)

HSP 1 Score: 85.8853 bits (211), Expect = 1.433e-16
Identity = 46/128 (35.94%), Postives = 64/128 (50.00%), Query Frame = 3
Query:    9 RAAALNIVPTSTXXXXXXXXXXXXXXXXXNGIALRVPTPNXXXXXXXXXXSKKTFAEEVNAAFRESADNELKGILSVCDEPLVSVDFRCXXXXXXXXXXXXXXMGDDMVKVIAWYDNEWGYSQRVVDL 392
            RAA+ NI+P+ST                  G+A RVPT +          +K+   +E+ AA +E ++ +LKGIL   +E +VS DF                +    VK++AWYDNEWGYS RVVDL
Sbjct:  202 RAASFNIIPSSTGAAKAVGKVLPDLNGKLTGMAFRVPTVDVSVVDLTVTLAKEASYDEIKAAIKEESEGKLKGILGYTEEDVVSSDFVGDSRSSIFDAKAGIALSKKFVKIVAWYDNEWGYSSRVVDL 329          
BLAST of CX300037 vs. ExPASy Swiss-Prot
Match: G3P_PARBA (Glyceraldehyde-3-phosphate dehydrogenase OS=Paracoccidioides brasiliensis (strain ATCC MYA-826 / Pb01) GN=GPD PE=1 SV=1)

HSP 1 Score: 85.5001 bits (210), Expect = 1.871e-16
Identity = 46/133 (34.59%), Postives = 65/133 (48.87%), Query Frame = 3
Query:    9 RAAALNIVPTSTXXXXXXXXXXXXXXXXXNGIALRVPTPNXXXXXXXXXXSKKTFAEEVNAAFRESADNELKGILSVCDEPLVSVDFRCXXXXXXXXXXXXXXMGDDMVKVIAWYDNEWGYSQRVVDLADIVA 407
            R AA NI+P+ST                  G+A+RVPT N           K    +++ AA + +++ ELKGIL   ++ LVS D                 + D  VK+I+WYDNEWGYS+RV+DL   +A
Sbjct:  200 RTAAQNIIPSSTGAAKAVGKVIPALNGKLTGMAMRVPTANVSVVDLTCRTEKPVTYDQIKAAVKAASEGELKGILGYSEDALVSTDLNGDPRSSIFDASAGIALNDRFVKLISWYDNEWGYSRRVLDLIAYIA 332          
BLAST of CX300037 vs. ExPASy Swiss-Prot
Match: G3PC_RANAC (Glyceraldehyde-3-phosphate dehydrogenase, cytosolic OS=Ranunculus acris GN=GAPC PE=2 SV=1)

HSP 1 Score: 85.5001 bits (210), Expect = 1.871e-16
Identity = 45/128 (35.16%), Postives = 64/128 (50.00%), Query Frame = 3
Query:    9 RAAALNIVPTSTXXXXXXXXXXXXXXXXXNGIALRVPTPNXXXXXXXXXXSKKTFAEEVNAAFRESADNELKGILSVCDEPLVSVDFRCXXXXXXXXXXXXXXMGDDMVKVIAWYDNEWGYSQRVVDL 392
            RAA+ NI+P+ST                  G+A RVPT +           KK    ++ AA +E ++ +LKGIL   ++ +VS DF                + D+ VK+++WYDNEWGYS RVVDL
Sbjct:  203 RAASFNIIPSSTGAAKAVGKVLPALNGKLTGMAFRVPTVDVSVVGLTVRLEKKATYADIKAAIKEESEGKLKGILGYTEDDVVSTDFIGDNRSSIFDAKAGIALNDNCVKLVSWYDNEWGYSSRVVDL 330          
BLAST of CX300037 vs. ExPASy Swiss-Prot
Match: G3P3_ANAVT (Glyceraldehyde-3-phosphate dehydrogenase 3 OS=Anabaena variabilis (strain ATCC 29413 / PCC 7937) GN=gap3 PE=3 SV=2)

HSP 1 Score: 85.5001 bits (210), Expect = 1.871e-16
Identity = 48/140 (34.29%), Postives = 73/140 (52.14%), Query Frame = 3
Query:    3 RARAAALNIVPTSTXXXXXXXXXXXXXXXXXNGIALRVPTPNXXXXXXXXXXSKKTFAEEVNAAFRESADNE-LKGILSVCDEPLVSVDFRCXXXXXXXXXXXXXXMGDDMVKVIAWYDNEWGYSQRVVDLADIVANNWK 419
            RARA +L+++PT+T                 NGIA+RVP  N          ++ T  EE+NA  + +++   L+GIL   + PLVS+D++               + +  VK++AWYDNEWGY  R+V+LA  VA + K
Sbjct:  198 RARATSLSLIPTTTGSATAIALIYPELKGKLNGIAVRVPLLNASLTDCVFEVNRPTTVEEINALLKAASEQAPLQGILGYEERPLVSIDYKDDPRSSIIDALSTMVVDETQVKILAWYDNEWGYVNRMVELARKVALSLK 337          
BLAST of CX300037 vs. ExPASy Swiss-Prot
Match: G3P3_ANASP (Glyceraldehyde-3-phosphate dehydrogenase 3 OS=Anabaena sp. (strain PCC 7120) GN=gap3 PE=2 SV=1)

HSP 1 Score: 85.5001 bits (210), Expect = 1.871e-16
Identity = 48/140 (34.29%), Postives = 73/140 (52.14%), Query Frame = 3
Query:    3 RARAAALNIVPTSTXXXXXXXXXXXXXXXXXNGIALRVPTPNXXXXXXXXXXSKKTFAEEVNAAFRESADNE-LKGILSVCDEPLVSVDFRCXXXXXXXXXXXXXXMGDDMVKVIAWYDNEWGYSQRVVDLADIVANNWK 419
            RARA +L+++PT+T                 NGIA+RVP  N          ++ T  EE+NA  + +++   L+GIL   + PLVS+D++               + +  VK++AWYDNEWGY  R+V+LA  VA + K
Sbjct:  198 RARATSLSLIPTTTGSATAIALIYPELKGKLNGIAVRVPLLNASLTDCVFEVTRPTTVEEINALLKAASEQAPLQGILGYEERPLVSIDYKDDPRSSIIDALSTMVVDETQVKILAWYDNEWGYVNRMVELARKVALSLK 337          
BLAST of CX300037 vs. ExPASy Swiss-Prot
Match: G3P_BORBU (Glyceraldehyde-3-phosphate dehydrogenase OS=Borrelia burgdorferi GN=gap PE=1 SV=3)

HSP 1 Score: 85.1149 bits (209), Expect = 2.444e-16
Identity = 49/133 (36.84%), Postives = 69/133 (51.88%), Query Frame = 3
Query:    3 RARAAALNIVPTSTXXXXXXXXXXXXXXXXXNGIALRVPTPNXXXXXXXXXXSKKTFA-EEVNAAFRESADN-ELKGILSVCDEPLVSVDFRCXXXXXXXXXXXXXXMGDDMVKVIAWYDNEWGYSQRVVDLA 395
            RARAAAL+I+PTST                 NG ++RVP P            KK    EE+N+  R++++  ELKGIL   ++P+VS D +               + +   K+++WYDNE+GYS RVVDLA
Sbjct:  198 RARAAALSIIPTSTGAAKAVGLVLPELKGKLNGTSMRVPVPTGSIVDLTVQLKKKDVTKEEINSVLRKASETPELKGILGYTEDPIVSSDIKGNSHSSIVDGLETMVLENGFAKILSWYDNEFGYSTRVVDLA 330          
The following BLAST results are available for this feature:
BLAST of CX300037 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 270
Match NameE-valueIdentityDescription
G3P_ERYGR1.097e-1634.59Glyceraldehyde-3-phosphate dehydrogenase OS=Erysip... [more]
G3P_COCP71.097e-1633.08Glyceraldehyde-3-phosphate dehydrogenase OS=Coccid... [more]
G3PC_MESCR1.097e-1635.94Glyceraldehyde-3-phosphate dehydrogenase, cytosoli... [more]
G3P2_DROME1.097e-1637.50Glyceraldehyde-3-phosphate dehydrogenase 2 OS=Dros... [more]
G3PC_CRAPL1.433e-1635.94Glyceraldehyde-3-phosphate dehydrogenase, cytosoli... [more]
G3P_PARBA1.871e-1634.59Glyceraldehyde-3-phosphate dehydrogenase OS=Paraco... [more]
G3PC_RANAC1.871e-1635.16Glyceraldehyde-3-phosphate dehydrogenase, cytosoli... [more]
G3P3_ANAVT1.871e-1634.29Glyceraldehyde-3-phosphate dehydrogenase 3 OS=Anab... [more]
G3P3_ANASP1.871e-1634.29Glyceraldehyde-3-phosphate dehydrogenase 3 OS=Anab... [more]
G3P_BORBU2.444e-1636.84Glyceraldehyde-3-phosphate dehydrogenase OS=Borrel... [more]

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Properties
Property NameValue
Genbank descriptionC07005D01SK SaltLeaf1 Citrus clementina cDNA clone C07005D01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX300037 ID=CX300037; Name=CX300037; organism=Citrus clementina; type=EST; length=555bp
GGCGTGCAAGAGCAGCTGCACTCAACATTGTCCCAACATCAACTGGTGCG
GCAAAAGCTGTGGCCCTTGTCCTCCCAGCACTCAAAGGCAAACTAAACGG
CATTGCCCTTCGTGTGCCAACACCAAACGTCTCGGTTGTTGATCTTGTCG
TTCAGGTGTCGAAGAAAACCTTCGCAGAAGAGGTGAACGCCGCTTTCAGA
GAAAGCGCTGACAATGAACTGAAAGGGATCCTCTCCGTGTGCGACGAGCC
CCTCGTTTCGGTCGACTTCAGGTGCTCTGATGTATCCTCAACCGTTGATT
CATCTCTCACACTTGTCATGGGAGACGACATGGTTAAGGTGATTGCATGG
TATGACAATGAATGGGGTTACTCTCAAAGGGTTGTGGATTTGGCCGACAT
TGTTGCCAACAACTGGAAGTGAAGTAAATACTAAAATCGGAACTCGGCTG
TAATCGGCACAACGATGTTCTTGTTTTTCATTTTTGGTTCCCCCATTTAT
TGTTCTGCGTCTTAAAATTTGTAGAATGTATAACACTATCTTATTATGGA
ACCTT
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