CX300039

Overview
NameCX300039
Unique NameCX300039
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length399
Libraries
Library NameType
SaltLeaf1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig3589 contig Ccv1_Contig3589:361..759. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX300039 vs. ExPASy Swiss-Prot
Match: RS5B_DROME (40S ribosomal protein S5b OS=Drosophila melanogaster GN=RpS5b PE=2 SV=1)

HSP 1 Score: 189.889 bits (481), Expect = 3.398e-48
Identity = 92/111 (82.88%), Postives = 105/111 (94.59%), Query Frame = 2
Query:    2 KHAMEIIHLLTDQNPIQVIVDAVINSGPREDATRIGSAGVVRRQAVDISPLRRVNQAIYLLTTGARESAFRNIKTIAECLADELINAAKGSSNSYAIKKKDEIERVAKANR 334
            KHA EIIHLLT +NP+QV V+A++NSGPRED+TRIG AG VRRQAVD+SPLRRVNQAI+L+ TGARE+AFRNIKT+AECLADELINAAKGSSNSYAIKKKDE+ERVAK+NR
Sbjct:  120 KHAFEIIHLLTSENPLQVTVNAIVNSGPREDSTRIGRAGTVRRQAVDVSPLRRVNQAIWLICTGAREAAFRNIKTVAECLADELINAAKGSSNSYAIKKKDELERVAKSNR 230          
BLAST of CX300039 vs. ExPASy Swiss-Prot
Match: RS5_CAEEL (40S ribosomal protein S5 OS=Caenorhabditis elegans GN=rps-5 PE=1 SV=1)

HSP 1 Score: 189.119 bits (479), Expect = 5.796e-48
Identity = 93/111 (83.78%), Postives = 106/111 (95.50%), Query Frame = 2
Query:    2 KHAMEIIHLLTDQNPIQVIVDAVINSGPREDATRIGSAGVVRRQAVDISPLRRVNQAIYLLTTGARESAFRNIKTIAECLADELINAAKGSSNSYAIKKKDEIERVAKANR 334
            KHA EII+LLT +NP+QV+V+AVINSGPRED+TRIG AG VRRQAVD++PLRRVNQAI+LL TGARE+AFRN+KTIAECLADELINAAKGSSNSYAIKKKDE+ERVAK+NR
Sbjct:  100 KHAFEIIYLLTGENPVQVLVNAVINSGPREDSTRIGRAGTVRRQAVDVAPLRRVNQAIWLLCTGAREAAFRNVKTIAECLADELINAAKGSSNSYAIKKKDELERVAKSNR 210          
BLAST of CX300039 vs. ExPASy Swiss-Prot
Match: RS5B_SCHPO (40S ribosomal protein S5-B OS=Schizosaccharomyces pombe GN=rps5b PE=2 SV=1)

HSP 1 Score: 181.03 bits (458), Expect = 1.578e-45
Identity = 89/111 (80.18%), Postives = 103/111 (92.79%), Query Frame = 2
Query:    2 KHAMEIIHLLTDQNPIQVIVDAVINSGPREDATRIGSAGVVRRQAVDISPLRRVNQAIYLLTTGARESAFRNIKTIAECLADELINAAKGSSNSYAIKKKDEIERVAKANR 334
            KHA EII LLTDQNP+QV+VDAV   GPRED+TRIGSAG VRRQAVD+SPLRRVNQA+ L+T GARE+AFRN+K+I+ECLA+E+INAAKGSSNSYAIKKKDE+ERVAK+NR
Sbjct:   93 KHAFEIIALLTDQNPLQVLVDAVAACGPREDSTRIGSAGTVRRQAVDVSPLRRVNQALALITIGAREAAFRNVKSISECLAEEIINAAKGSSNSYAIKKKDELERVAKSNR 203          
BLAST of CX300039 vs. ExPASy Swiss-Prot
Match: RS5A_SCHPO (40S ribosomal protein S5-A OS=Schizosaccharomyces pombe GN=rps5a PE=2 SV=1)

HSP 1 Score: 181.03 bits (458), Expect = 1.578e-45
Identity = 89/111 (80.18%), Postives = 103/111 (92.79%), Query Frame = 2
Query:    2 KHAMEIIHLLTDQNPIQVIVDAVINSGPREDATRIGSAGVVRRQAVDISPLRRVNQAIYLLTTGARESAFRNIKTIAECLADELINAAKGSSNSYAIKKKDEIERVAKANR 334
            KHA EII LLTDQNP+QV+VDAV   GPRED+TRIGSAG VRRQAVD+SPLRRVNQA+ L+T GARE+AFRN+K+I+ECLA+E+INAAKGSSNSYAIKKKDE+ERVAK+NR
Sbjct:   93 KHAFEIIALLTDQNPLQVLVDAVAACGPREDSTRIGSAGTVRRQAVDVSPLRRVNQALALITIGAREAAFRNVKSISECLAEEIINAAKGSSNSYAIKKKDELERVAKSNR 203          
BLAST of CX300039 vs. ExPASy Swiss-Prot
Match: RS5_PODCA (40S ribosomal protein S5 OS=Podocoryne carnea GN=RPS5 PE=2 SV=1)

HSP 1 Score: 179.104 bits (453), Expect = 5.998e-45
Identity = 85/111 (76.58%), Postives = 104/111 (93.69%), Query Frame = 2
Query:    2 KHAMEIIHLLTDQNPIQVIVDAVINSGPREDATRIGSAGVVRRQAVDISPLRRVNQAIYLLTTGARESAFRNIKTIAECLADELINAAKGSSNSYAIKKKDEIERVAKANR 334
            +H+ EI+HLLT +NP+Q++ +A+ NSGPRED+TRIG AG VRRQAVD++PLRRVNQAI+LL TGARE++FRNIK+IAECLADELINAA+GSSNSYAIKKKDE+ERVAK+NR
Sbjct:  100 RHSFEIMHLLTGENPLQLVCEAISNSGPREDSTRIGRAGTVRRQAVDVAPLRRVNQAIWLLCTGAREASFRNIKSIAECLADELINAARGSSNSYAIKKKDELERVAKSNR 210          
BLAST of CX300039 vs. ExPASy Swiss-Prot
Match: RS5_YEAST (40S ribosomal protein S5 OS=Saccharomyces cerevisiae GN=RPS5 PE=1 SV=3)

HSP 1 Score: 177.563 bits (449), Expect = 1.745e-44
Identity = 87/111 (78.38%), Postives = 100/111 (90.09%), Query Frame = 2
Query:    2 KHAMEIIHLLTDQNPIQVIVDAVINSGPREDATRIGSAGVVRRQAVDISPLRRVNQAIYLLTTGARESAFRNIKTIAECLADELINAAKGSSNSYAIKKKDEIERVAKANR 334
            KH ++II++LTDQNPIQV+VDA+ N+GPRED TR+G  G  RRQAVD+SPLRRVNQAI LLT GARE+AFRNIKTIAE LA+ELINAAKGSS SYAIKKKDE+ERVAK+NR
Sbjct:  115 KHTLDIINVLTDQNPIQVVVDAITNTGPREDTTRVGGGGAARRQAVDVSPLRRVNQAIALLTIGAREAAFRNIKTIAETLAEELINAAKGSSTSYAIKKKDELERVAKSNR 225          
BLAST of CX300039 vs. ExPASy Swiss-Prot
Match: RS5_DICDI (40S ribosomal protein S5 OS=Dictyostelium discoideum GN=rps5 PE=3 SV=1)

HSP 1 Score: 171.014 bits (432), Expect = 1.633e-42
Identity = 81/111 (72.97%), Postives = 101/111 (90.99%), Query Frame = 2
Query:    2 KHAMEIIHLLTDQNPIQVIVDAVINSGPREDATRIGSAGVVRRQAVDISPLRRVNQAIYLLTTGARESAFRNIKTIAECLADELINAAKGSSNSYAIKKKDEIERVAKANR 334
            + A EII+LLTD+NP+QV+V+AV+NSGPRED+TRIGSAG VRRQAVD+SP+RRVN A+YLLT G R +AFRNI+T+AECLADELINA+KGS NSY+IK+KD +ER AK++R
Sbjct:   80 EQAFEIIYLLTDKNPLQVLVEAVMNSGPREDSTRIGSAGTVRRQAVDVSPMRRVNHAVYLLTQGTRAAAFRNIRTVAECLADELINASKGSPNSYSIKQKDALERTAKSHR 190          
BLAST of CX300039 vs. ExPASy Swiss-Prot
Match: RS5_ENTHI (40S ribosomal protein S5 (Fragment) OS=Entamoeba histolytica PE=2 SV=1)

HSP 1 Score: 149.058 bits (375), Expect = 6.647e-36
Identity = 69/111 (62.16%), Postives = 93/111 (83.78%), Query Frame = 2
Query:    2 KHAMEIIHLLTDQNPIQVIVDAVINSGPREDATRIGSAGVVRRQAVDISPLRRVNQAIYLLTTGARESAFRNIKTIAECLADELINAAKGSSNSYAIKKKDEIERVAKANR 334
            + + EIIHLLT++NPIQV+VDA+IN+ PRED+TR+G+ G VR QAVD+SPLRR+N A+YLL  G R  AFRN K++AECLADE++NA+K  + S+AI KK+++ERVA +NR
Sbjct:   38 EESFEIIHLLTEKNPIQVLVDAIINASPREDSTRVGTGGNVRGQAVDVSPLRRINHALYLLIMGCRCGAFRNSKSLAECLADEIVNASKSYTGSFAIMKKEDLERVANSNR 148          
BLAST of CX300039 vs. ExPASy Swiss-Prot
Match: RS5_ENCCU (40S ribosomal protein S5 OS=Encephalitozoon cuniculi GN=RPS5 PE=1 SV=1)

HSP 1 Score: 127.872 bits (320), Expect = 1.586e-29
Identity = 61/106 (57.55%), Postives = 84/106 (79.25%), Query Frame = 2
Query:   17 IIHLLTDQNPIQVIVDAVINSGPREDATRIGSAGVVRRQAVDISPLRRVNQAIYLLTTGARESAFRNIKTIAECLADELINAAKGSSNSYAIKKKDEIERVAKANR 334
            IIH +T +NP+QV+VDA++NSGPRED  RIG AG +RR +VD+SPL+R++ AI  L+ G R ++FRN  T+AE +A+ELI A+  S NSYA+ KK EIER+A++NR
Sbjct:  103 IIHSMTKKNPLQVLVDAIVNSGPREDTARIGRAGSMRRTSVDVSPLKRISIAISNLSAGIRNASFRNRITLAEAIANELIAASTNSQNSYAVNKKKEIERIAQSNR 208          
BLAST of CX300039 vs. ExPASy Swiss-Prot
Match: RS7_AERPE (30S ribosomal protein S7P OS=Aeropyrum pernix GN=rps7p PE=3 SV=3)

HSP 1 Score: 119.013 bits (297), Expect = 7.366e-27
Identity = 59/111 (53.15%), Postives = 81/111 (72.97%), Query Frame = 2
Query:    2 KHAMEIIHLLTDQNPIQVIVDAVINSGPREDATRIGSAGVVRRQAVDISPLRRVNQAIYLLTTGARESAFRNIKTIAECLADELINAAKGSSNSYAIKKKDEIERVAKANR 334
            K A +II+  T +NPIQV+V A+ NS PRED T+I   G+  R +VD++P RRV+QA+  +  GAR+ AF N K I ECLA+ELI AA+G   SYAI++K+EIER+A ++R
Sbjct:   95 KTAFDIIYFETGENPIQVLVKAIENSAPREDTTKITYGGITYRVSVDVAPQRRVDQALKFIADGARQCAFNNPKPIEECLAEELILAARGDPRSYAIRQKEEIERIALSSR 205          
The following BLAST results are available for this feature:
BLAST of CX300039 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 66
Match NameE-valueIdentityDescription
RS5B_DROME3.398e-4882.8840S ribosomal protein S5b OS=Drosophila melanogast... [more]
RS5_CAEEL5.796e-4883.7840S ribosomal protein S5 OS=Caenorhabditis elegans... [more]
RS5B_SCHPO1.578e-4580.1840S ribosomal protein S5-B OS=Schizosaccharomyces ... [more]
RS5A_SCHPO1.578e-4580.1840S ribosomal protein S5-A OS=Schizosaccharomyces ... [more]
RS5_PODCA5.998e-4576.5840S ribosomal protein S5 OS=Podocoryne carnea GN=R... [more]
RS5_YEAST1.745e-4478.3840S ribosomal protein S5 OS=Saccharomyces cerevisi... [more]
RS5_DICDI1.633e-4272.9740S ribosomal protein S5 OS=Dictyostelium discoide... [more]
RS5_ENTHI6.647e-3662.1640S ribosomal protein S5 (Fragment) OS=Entamoeba h... [more]
RS5_ENCCU1.586e-2957.5540S ribosomal protein S5 OS=Encephalitozoon cunicu... [more]
RS7_AERPE7.366e-2753.1530S ribosomal protein S7P OS=Aeropyrum pernix GN=r... [more]

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Properties
Property NameValue
Genbank descriptionC07005D05SK SaltLeaf1 Citrus clementina cDNA clone C07005D05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX300039 ID=CX300039; Name=CX300039; organism=Citrus clementina; type=EST; length=399bp
TAAGCATGCCATGGAGATCATTCACCTTTTGACTGACCAGAACCCAATTC
AAGTCATTGTTGACGCTGTCATCAACAGTGGTCCAAGGGAAGATGCTACC
CGTATTGGATCTGCTGGTGTTGTTAGGCGTCAGGCTGTGGATATTTCCCC
ATTGCGCCGTGTGAATCAAGCGATCTATCTACTCACCACTGGTGCTCGTG
AATCTGCTTTTCGTAACATCAAGACTATTGCCGAATGCTTGGCCGATGAA
CTCATTAATGCTGCCAAGGGTTCATCTAACAGCTATGCGATCAAGAAGAA
GGATGAGATTGAGAGAGTGGCAAAGGCCAATCGCTGAGGACGTGATAGTG
GAGAAGCAGATGCAGAAAGTTGTACTTTTAAAAAAAAAAAAAACTTTTG
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