CX300039

Overview
NameCX300039
Unique NameCX300039
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length399
Libraries
Library NameType
SaltLeaf1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig3589 contig Ccv1_Contig3589:361..759. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX300039 vs. ExPASy Swiss-Prot
Match: RS7_PYRAB (30S ribosomal protein S7P OS=Pyrococcus abyssi GN=rps7p PE=3 SV=1)

HSP 1 Score: 92.0485 bits (227), Expect = 9.643e-19
Identity = 50/111 (45.05%), Postives = 70/111 (63.06%), Query Frame = 2
Query:    2 KHAMEIIHLLTDQNPIQVIVDAVINSGPREDATRIGSAGVVRRQAVDISPLRRVNQAIYLLTTGARESAFRNIKTIAECLADELINAAKGSSNSYAIKKKDEIERVAKANR 334
            K A +II   T +NPIQV+V A+ N+ PRED T +   G+    AVDISP+RR++ A+  +  GA    +R   + AE LA+E+I AA     SYA  KK EIER+A+++R
Sbjct:  105 KEAFKIIEKRTGKNPIQVLVWAIENAAPREDTTSVMFGGIRYHVAVDISPMRRLDVALRNIALGASAKCYRTKMSFAEALAEEIILAANKDPKSYAYSKKLEIERIAESSR 215          
BLAST of CX300039 vs. ExPASy Swiss-Prot
Match: RS7_METB6 (30S ribosomal protein S7P OS=Methanoregula boonei (strain 6A8) GN=rps7p PE=3 SV=1)

HSP 1 Score: 90.8929 bits (224), Expect = 2.148e-18
Identity = 46/111 (41.44%), Postives = 75/111 (67.57%), Query Frame = 2
Query:    2 KHAMEIIHLLTDQNPIQVIVDAVINSGPREDATRIGSAGVVRRQAVDISPLRRVNQAIYLLTTGARESAFRNIKTIAECLADELINAAKGSSNSYAIKKKDEIERVAKANR 334
            + A E+I+  T +NPI+V+V+A+ N+GPRE+  R+   G+   ++VD +PLRRV+ AI  +     +S+ ++ K  +  LADELI A+KG +  Y++ KK+E ER+AK+ R
Sbjct:   94 RDAFELINKKTKRNPIEVLVEAIGNTGPREETVRLKYGGINVPKSVDTAPLRRVDSAIGFIAEAVWKSSRKSKKPASAILADELIAASKGDAKCYSVGKKEEKERIAKSAR 204          
BLAST of CX300039 vs. ExPASy Swiss-Prot
Match: RS7_HALWD (30S ribosomal protein S7P OS=Haloquadratum walsbyi (strain DSM 16790) GN=rps7p PE=3 SV=1)

HSP 1 Score: 90.1225 bits (222), Expect = 3.664e-18
Identity = 44/109 (40.37%), Postives = 71/109 (65.14%), Query Frame = 2
Query:    8 AMEIIHLLTDQNPIQVIVDAVINSGPREDATRIGSAGVVRRQAVDISPLRRVNQAIYLLTTGARESAFRNIKTIAECLADELINAAKGSSNSYAIKKKDEIERVAKANR 334
            A + IH  T++NP+QV+V  V N+ PRE+  R+   G+   QAVD++P RRV+QA+  +  G +  ++++ ++ A+ LA  +I AA     SYA+ +K+E ERVA+A R
Sbjct:  119 AFDTIHNRTEENPVQVLVRGVENAAPREETVRLKYGGISVPQAVDVAPQRRVDQALKFIADGTQRGSYKSAQSAADSLAQVIIGAANYDVQSYAVGQKEESERVAEAAR 227          
BLAST of CX300039 vs. ExPASy Swiss-Prot
Match: RS7_NATPD (30S ribosomal protein S7P OS=Natronomonas pharaonis (strain DSM 2160 / ATCC 35678) GN=rps7p PE=3 SV=1)

HSP 1 Score: 87.8113 bits (216), Expect = 1.818e-17
Identity = 44/111 (39.64%), Postives = 68/111 (61.26%), Query Frame = 2
Query:    2 KHAMEIIHLLTDQNPIQVIVDAVINSGPREDATRIGSAGVVRRQAVDISPLRRVNQAIYLLTTGARESAFRNIKTIAECLADELINAAKGSSNSYAIKKKDEIERVAKANR 334
            + A +I+   TD+NP+QV+V AV N+GPRE+  R+   G+   +AVD++P RRV+ A+  +  G    +F+    + E LA +LI AA     +Y + +K+E ERVA A R
Sbjct:   93 REAFDIVAERTDENPVQVLVTAVENAGPREETVRLKYGGISVPKAVDVAPQRRVDLALKFIAEGTYNDSFKTTTPVEEALAHQLIGAANYDLQAYPVSQKEEQERVAAAAR 203          
BLAST of CX300039 vs. ExPASy Swiss-Prot
Match: RS7_HALMO (30S ribosomal protein S7P OS=Halococcus morrhuae GN=rps7p PE=3 SV=1)

HSP 1 Score: 86.6557 bits (213), Expect = 4.051e-17
Identity = 43/111 (38.74%), Postives = 71/111 (63.96%), Query Frame = 2
Query:    2 KHAMEIIHLLTDQNPIQVIVDAVINSGPREDATRIGSAGVVRRQAVDISPLRRVNQAIYLLTTGARESAFRNIKTIAECLADELINAAKGSSNSYAIKKKDEIERVAKANR 334
            ++A ++I   T+++P+QV+V AV N+ PRE+  R+   G+   QAVD++P RRV+QA+  +  G   ++F++     E LA++L  AA     +YA+ +K+E ERVA A R
Sbjct:   93 RNAFDLIAERTEESPVQVLVSAVENAAPREETVRLKYGGISVPQAVDVAPQRRVDQALKFIAEGTHSASFKSPTDAHEALAEQLTGAANYDVQTYAVNQKEEKERVAAAAR 203          
BLAST of CX300039 vs. ExPASy Swiss-Prot
Match: RS7_NANEQ (30S ribosomal protein S7P OS=Nanoarchaeum equitans GN=rps7p PE=3 SV=1)

HSP 1 Score: 83.9593 bits (206), Expect = 2.626e-16
Identity = 49/107 (45.79%), Postives = 66/107 (61.68%), Query Frame = 2
Query:   14 EIIHLLTDQNPIQVIVDAVINSGPREDATRIGSAGVVRRQAVDISPLRRVNQAIYLLTTGARESAFRNIKTIAECLADELINAAKGSSNSYAIKKKDEIERVAKANR 334
            EII   T QNP++V V A+ N+ PRE+ T I   G    +AVD SP RRV+ AI  +  GA   + +   +I E LA+E+INA   S  SYAIK+K EIE+ A++ R
Sbjct:   92 EIIEKRTKQNPLKVFVKAIENAAPREETTTIEYGGARYPKAVDCSPQRRVDLAIRHMVWGAFHGSRKKPISIEEALAEEIINAYNNSLKSYAIKRKLEIEKTAESAR 198          
The following BLAST results are available for this feature:
BLAST of CX300039 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 66
Match NameE-valueIdentityDescription
RS7_PYRAB9.643e-1945.0530S ribosomal protein S7P OS=Pyrococcus abyssi GN=... [more]
RS7_METB62.148e-1841.4430S ribosomal protein S7P OS=Methanoregula boonei ... [more]
RS7_HALWD3.664e-1840.3730S ribosomal protein S7P OS=Haloquadratum walsbyi... [more]
RS7_NATPD1.818e-1739.6430S ribosomal protein S7P OS=Natronomonas pharaoni... [more]
RS7_HALMO4.051e-1738.7430S ribosomal protein S7P OS=Halococcus morrhuae G... [more]
RS7_NANEQ2.626e-1645.7930S ribosomal protein S7P OS=Nanoarchaeum equitans... [more]

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Properties
Property NameValue
Genbank descriptionC07005D05SK SaltLeaf1 Citrus clementina cDNA clone C07005D05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX300039 ID=CX300039; Name=CX300039; organism=Citrus clementina; type=EST; length=399bp
TAAGCATGCCATGGAGATCATTCACCTTTTGACTGACCAGAACCCAATTC
AAGTCATTGTTGACGCTGTCATCAACAGTGGTCCAAGGGAAGATGCTACC
CGTATTGGATCTGCTGGTGTTGTTAGGCGTCAGGCTGTGGATATTTCCCC
ATTGCGCCGTGTGAATCAAGCGATCTATCTACTCACCACTGGTGCTCGTG
AATCTGCTTTTCGTAACATCAAGACTATTGCCGAATGCTTGGCCGATGAA
CTCATTAATGCTGCCAAGGGTTCATCTAACAGCTATGCGATCAAGAAGAA
GGATGAGATTGAGAGAGTGGCAAAGGCCAATCGCTGAGGACGTGATAGTG
GAGAAGCAGATGCAGAAAGTTGTACTTTTAAAAAAAAAAAAAACTTTTG
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