CX300041

Overview
NameCX300041
Unique NameCX300041
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length559
Libraries
Library NameType
SaltLeaf1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX300041 vs. ExPASy Swiss-Prot
Match: LLDD_SALEP (L-lactate dehydrogenase [cytochrome] OS=Salmonella enteritidis PT4 (strain P125109) GN=lldD PE=3 SV=1)

HSP 1 Score: 136.346 bits (342), Expect = 9.495e-32
Identity = 67/143 (46.85%), Postives = 93/143 (65.03%), Query Frame = 2
Query:    2 DASLSWKDLEWLRSITKLPILIKGILTREDAIKAVEVGVAGIIVSNHGARQLDYSPATISALEEVVHAVKGRVPILMDGGVRRGTDVFKALALGAQAVLIGRPVVYGLAAKGEYGVRRVIEMLKDEFELTMALTGCPSVKHIT 430
            D S+SWKDLEW+R     P++IKGIL  EDA  AV  G  GI+VSNHG RQLD   ++  AL  +  AVKG + IL D G+R G DV + +ALGA  VL+GR  +Y LA  G+ GV  ++++++ E ++ M LTG  ++  I+
Sbjct:  229 DPSISWKDLEWIREFWDGPMVIKGILDPEDARDAVRFGADGIVVSNHGGRQLDGVLSSARALPAIADAVKGDIAILADSGIRNGLDVVRMIALGADTVLLGRAYLYALATAGKAGVANLLDLIEKEMKVAMTLTGAKTISEIS 371          
BLAST of CX300041 vs. ExPASy Swiss-Prot
Match: LLDD_SALCH (L-lactate dehydrogenase [cytochrome] OS=Salmonella choleraesuis GN=lldD PE=3 SV=1)

HSP 1 Score: 136.346 bits (342), Expect = 9.495e-32
Identity = 67/143 (46.85%), Postives = 93/143 (65.03%), Query Frame = 2
Query:    2 DASLSWKDLEWLRSITKLPILIKGILTREDAIKAVEVGVAGIIVSNHGARQLDYSPATISALEEVVHAVKGRVPILMDGGVRRGTDVFKALALGAQAVLIGRPVVYGLAAKGEYGVRRVIEMLKDEFELTMALTGCPSVKHIT 430
            D S+SWKDLEW+R     P++IKGIL  EDA  AV  G  GI+VSNHG RQLD   ++  AL  +  AVKG + IL D G+R G DV + +ALGA  VL+GR  +Y LA  G+ GV  ++++++ E ++ M LTG  ++  I+
Sbjct:  229 DPSISWKDLEWIREFWDGPMVIKGILDPEDARDAVRFGADGIVVSNHGGRQLDGVLSSARALPAIADAVKGDIAILADSGIRNGLDVVRMIALGADTVLLGRAYLYALATAGKAGVANLLDLIEKEMKVAMTLTGAKTISEIS 371          
BLAST of CX300041 vs. ExPASy Swiss-Prot
Match: LLDD_ACIAD (L-lactate dehydrogenase [cytochrome] OS=Acinetobacter sp. (strain ADP1) GN=lldD PE=3 SV=1)

HSP 1 Score: 136.346 bits (342), Expect = 9.495e-32
Identity = 67/145 (46.21%), Postives = 93/145 (64.14%), Query Frame = 2
Query:    2 DASLSWKDLEWLRSITKLPILIKGILTREDAIKAVEVGVAGIIVSNHGARQLDYSPATISALEEVVHAVKGRVPILMDGGVRRGTDVFKALALGAQAVLIGRPVVYGLAAKGEYGVRRVIEMLKDEFELTMALTGCPSVKHITRN 436
            D S+SWKDLEW+R     P++IKGIL  EDA  AV  G  GI+VSNHG RQLD   ++  A+  +  AVKG + IL D G+R G DV + LALGA +V++GR  +Y LAA+G  GV  +++++  E  + M LTG  ++  I  +
Sbjct:  229 DPSISWKDLEWIREFWDGPMVIKGILDPEDAKDAVRFGADGIVVSNHGGRQLDGVMSSARAMPAIAEAVKGDLTILADSGIRNGLDVVRMLALGADSVMLGRAFIYALAAQGGQGVSNLLDLIDKEMRVAMTLTGAKTIADINES 373          
BLAST of CX300041 vs. ExPASy Swiss-Prot
Match: LLDD_SERP5 (L-lactate dehydrogenase [cytochrome] OS=Serratia proteamaculans (strain 568) GN=lldD PE=3 SV=1)

HSP 1 Score: 135.576 bits (340), Expect = 1.620e-31
Identity = 67/143 (46.85%), Postives = 91/143 (63.64%), Query Frame = 2
Query:    2 DASLSWKDLEWLRSITKLPILIKGILTREDAIKAVEVGVAGIIVSNHGARQLDYSPATISALEEVVHAVKGRVPILMDGGVRRGTDVFKALALGAQAVLIGRPVVYGLAAKGEYGVRRVIEMLKDEFELTMALTGCPSVKHIT 430
            D S+SWKDL+W+R   + P++IKGIL  EDA  AV  G  GI+VSNHG RQLD   +T  AL  +  AVKG + +L D G+R G DV + +ALGA  VL+GR   Y LAA G+ GV  ++E++  E  + M L G  ++  I+
Sbjct:  229 DPSISWKDLDWIREFWQGPMIIKGILDPEDAKDAVRFGADGIVVSNHGGRQLDGVLSTAHALPAIAEAVKGDITLLADSGIRSGLDVVRMIALGADGVLLGRAFAYALAAAGQAGVANLLELIDKEMRVAMTLIGAKTIADIS 371          
BLAST of CX300041 vs. ExPASy Swiss-Prot
Match: LLDD_SALPC (L-lactate dehydrogenase [cytochrome] OS=Salmonella paratyphi C (strain RKS4594) GN=lldD PE=3 SV=1)

HSP 1 Score: 135.576 bits (340), Expect = 1.620e-31
Identity = 66/143 (46.15%), Postives = 93/143 (65.03%), Query Frame = 2
Query:    2 DASLSWKDLEWLRSITKLPILIKGILTREDAIKAVEVGVAGIIVSNHGARQLDYSPATISALEEVVHAVKGRVPILMDGGVRRGTDVFKALALGAQAVLIGRPVVYGLAAKGEYGVRRVIEMLKDEFELTMALTGCPSVKHIT 430
            D S+SWKDLEW+R     P++IKG+L  EDA  AV  G  GI+VSNHG RQLD   ++  AL  +  AVKG + IL D G+R G DV + +ALGA  VL+GR  +Y LA  G+ GV  ++++++ E ++ M LTG  ++  I+
Sbjct:  229 DPSISWKDLEWIREFWDGPMVIKGLLDPEDARDAVRFGADGIVVSNHGGRQLDGVLSSARALPAIADAVKGDIAILADSGIRNGLDVVRMIALGADTVLLGRAYLYALATAGKAGVANLLDLIEKEMKVAMTLTGAKTISEIS 371          
BLAST of CX300041 vs. ExPASy Swiss-Prot
Match: LLDD_BART1 (L-lactate dehydrogenase [cytochrome] OS=Bartonella tribocorum (strain CIP 105476 / IBS 506) GN=lldD PE=3 SV=1)

HSP 1 Score: 135.191 bits (339), Expect = 2.115e-31
Identity = 69/143 (48.25%), Postives = 92/143 (64.34%), Query Frame = 2
Query:    2 DASLSWKDLEWLRSITKLPILIKGILTREDAIKAVEVGVAGIIVSNHGARQLDYSPATISALEEVVHAVKGRVPILMDGGVRRGTDVFKALALGAQAVLIGRPVVYGLAAKGEYGVRRVIEMLKDEFELTMALTGCPSVKHIT 430
            D S+ W DL+W+R   K  +++KGIL  EDA +AV+ G  GI+VSNHG RQLD   +T  AL  +  AVK  + IL D GVR G DV + +A GA AV+IGR  VY LAA GE GV  ++++  +E  + M LTG  ++K IT
Sbjct:  229 DPSIGWHDLQWIRDFWKGKMILKGILDPEDAREAVQFGADGIVVSNHGGRQLDGVLSTARALPAIAEAVKNDLVILADSGVRSGLDVVRMIAQGADAVMIGRAFVYALAAAGEKGVAHLLDLFANEMRVAMTLTGAQTLKEIT 371          
BLAST of CX300041 vs. ExPASy Swiss-Prot
Match: YKN3_SCHPO (Uncharacterized lactate 2-monooxygenase PB1A11.03 OS=Schizosaccharomyces pombe GN=SPAPB1A11.03 PE=2 SV=1)

HSP 1 Score: 134.806 bits (338), Expect = 2.763e-31
Identity = 72/138 (52.17%), Postives = 94/138 (68.12%), Query Frame = 2
Query:    8 SLSWKDLEWLRSITKLPILIKGILTREDAIKAVEVGVAGIIVSNHGARQLDYSPATISALEEVVHAVKGRVPILMDGGVRRGTDVFKALALGAQAVLIGRPVVYGLAAKGEYGVRRVIEMLKDEFELTMALTGCPSVK 421
            S  W+DL++LR     PI++KGI+   DA KAVE G+ GI+VSNHG RQ D   A+++ L ++V AV  ++ +L D GVR G D+ KALALGA+ VLIGRP VYGLA +G  GV  VI  L  + ELT+ L+G  SVK
Sbjct:  257 SHDWEDLKFLRKHWDGPIVLKGIMNVPDAKKAVEYGMQGIVVSNHGGRQQDGGVASLTMLPKIVDAVGDKLDVLFDSGVRSGADIAKALALGAKMVLIGRPYVYGLALEGSSGVSHVIRCLLGDLELTLHLSGIVSVK 394          
BLAST of CX300041 vs. ExPASy Swiss-Prot
Match: LLDD_PSEFS (L-lactate dehydrogenase [cytochrome] OS=Pseudomonas fluorescens (strain SBW25) GN=lldD PE=3 SV=2)

HSP 1 Score: 134.42 bits (337), Expect = 3.608e-31
Identity = 68/142 (47.89%), Postives = 91/142 (64.08%), Query Frame = 2
Query:    2 DASLSWKDLEWLRSITKLPILIKGILTREDAIKAVEVGVAGIIVSNHGARQLDYSPATISALEEVVHAVKGRVPILMDGGVRRGTDVFKALALGAQAVLIGRPVVYGLAAKGEYGVRRVIEMLKDEFELTMALTGCPSVKHI 427
            D S+SWKDLEW+R   K P++IKGIL  +DA  AV  G  GI+VSNHG RQLD   +T  AL  +  AV   + +L+D G+R G DV + LALGA+A L+GR   Y LAA G+ GV  ++++   E  + M LTG  S++ I
Sbjct:  229 DPSISWKDLEWIREFWKGPMIIKGILDPQDAKDAVSFGADGIVVSNHGGRQLDGVLSTAKALPPIADAVGDDLTVLVDSGIRSGLDVVRMLALGAKACLLGRASAYALAADGQNGVENLLDIFAKEMRVAMTLTGVTSIEQI 370          
BLAST of CX300041 vs. ExPASy Swiss-Prot
Match: LLDD_HAEIN (L-lactate dehydrogenase [cytochrome] OS=Haemophilus influenzae GN=lldD PE=3 SV=1)

HSP 1 Score: 133.265 bits (334), Expect = 8.038e-31
Identity = 66/142 (46.48%), Postives = 90/142 (63.38%), Query Frame = 2
Query:    2 DASLSWKDLEWLRSITKLPILIKGILTREDAIKAVEVGVAGIIVSNHGARQLDYSPATISALEEVVHAVKGRVPILMDGGVRRGTDVFKALALGAQAVLIGRPVVYGLAAKGEYGVRRVIEMLKDEFELTMALTGCPSVKHI 427
            D S+SWKDLEW+R   + P++IKGIL  EDA  AV  G  GI+VSNHG RQLD   ++  AL  +  AVKG + I+ D G+R G D+ + LALGA A ++GR  VY L A+G  GV  ++++ K E  + M LT   ++  I
Sbjct:  229 DPSISWKDLEWIREFWEGPMVIKGILDPEDAKDAVRFGADGIVVSNHGGRQLDGVLSSARALPPIADAVKGDIKIIADSGIRNGLDIVRMLALGADATMLGRAFVYALGAEGRQGVENMLDIFKKEMHVAMTLTSNRTIADI 370          
BLAST of CX300041 vs. ExPASy Swiss-Prot
Match: LLDD_BARQU (L-lactate dehydrogenase [cytochrome] OS=Bartonella quintana GN=lldD PE=3 SV=1)

HSP 1 Score: 133.265 bits (334), Expect = 8.038e-31
Identity = 67/143 (46.85%), Postives = 91/143 (63.64%), Query Frame = 2
Query:    2 DASLSWKDLEWLRSITKLPILIKGILTREDAIKAVEVGVAGIIVSNHGARQLDYSPATISALEEVVHAVKGRVPILMDGGVRRGTDVFKALALGAQAVLIGRPVVYGLAAKGEYGVRRVIEMLKDEFELTMALTGCPSVKHIT 430
            D S+ W DL+W+R   K  +++KGIL  +DA +AV+ G  GI+VSNHG RQLD   +T  AL  +   V G + IL D GVR G DV + +A GA AV+IGR  +Y LAA GE GV  ++++  +E  + M LTG  +VK IT
Sbjct:  229 DPSIGWSDLQWIRDFWKGKMILKGILDPQDAREAVQFGADGIVVSNHGGRQLDGVLSTARALPAIAEVVTGDLTILADSGVRSGLDVVRMIAQGADAVMIGRAFIYALAAAGEKGVMHLLDLFANEMRVAMTLTGVRAVKEIT 371          
The following BLAST results are available for this feature:
BLAST of CX300041 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 127
Match NameE-valueIdentityDescription
LLDD_SALEP9.495e-3246.85L-lactate dehydrogenase [cytochrome] OS=Salmonella... [more]
LLDD_SALCH9.495e-3246.85L-lactate dehydrogenase [cytochrome] OS=Salmonella... [more]
LLDD_ACIAD9.495e-3246.21L-lactate dehydrogenase [cytochrome] OS=Acinetobac... [more]
LLDD_SERP51.620e-3146.85L-lactate dehydrogenase [cytochrome] OS=Serratia p... [more]
LLDD_SALPC1.620e-3146.15L-lactate dehydrogenase [cytochrome] OS=Salmonella... [more]
LLDD_BART12.115e-3148.25L-lactate dehydrogenase [cytochrome] OS=Bartonella... [more]
YKN3_SCHPO2.763e-3152.17Uncharacterized lactate 2-monooxygenase PB1A11.03 ... [more]
LLDD_PSEFS3.608e-3147.89L-lactate dehydrogenase [cytochrome] OS=Pseudomona... [more]
LLDD_HAEIN8.038e-3146.48L-lactate dehydrogenase [cytochrome] OS=Haemophilu... [more]
LLDD_BARQU8.038e-3146.85L-lactate dehydrogenase [cytochrome] OS=Bartonella... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionC07005D07SK SaltLeaf1 Citrus clementina cDNA clone C07005D07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX300041 ID=CX300041; Name=CX300041; organism=Citrus clementina; type=EST; length=559bp
GGATGCTTCTTTAAGTTGGAAGGATTTAGAATGGCTAAGATCTATTACAA
AGTTACCAATTTTGATCAAGGGGATACTTACTCGTGAAGATGCAATAAAA
GCTGTGGAAGTAGGTGTTGCTGGGATTATTGTCTCCAATCACGGAGCTCG
ACAGTTAGATTATAGTCCTGCCACTATTTCTGCTCTGGAAGAGGTGGTTC
ATGCCGTTAAAGGAAGAGTTCCAATTCTTATGGATGGAGGAGTGCGGCGA
GGAACAGATGTTTTCAAGGCATTGGCCCTCGGTGCACAAGCTGTACTTAT
TGGAAGGCCTGTAGTCTACGGCCTTGCTGCAAAAGGGGAATATGGGGTGA
GACGCGTCATTGAAATGCTGAAGGATGAGTTTGAGTTGACCATGGCCCTT
ACTGGCTGTCCTAGTGTGAAACATATTACCAGGAACCATGTGAGAACTGA
GCATGAGAGAATCCATTCGATGCTGTAATATTATTTTCTGTTGCAGAAAT
GTCTAAATGTATGGATGAATTAAACCATGAGCAATCATTTAAACTAATTA
AATTTGAAG
back to top