CX300041

Overview
NameCX300041
Unique NameCX300041
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length559
Libraries
Library NameType
SaltLeaf1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX300041 vs. ExPASy Swiss-Prot
Match: LLDD_PSEU2 (L-lactate dehydrogenase [cytochrome] OS=Pseudomonas syringae pv. syringae (strain B728a) GN=lldD PE=3 SV=1)

HSP 1 Score: 132.88 bits (333), Expect = 1.050e-30
Identity = 66/142 (46.48%), Postives = 91/142 (64.08%), Query Frame = 2
Query:    2 DASLSWKDLEWLRSITKLPILIKGILTREDAIKAVEVGVAGIIVSNHGARQLDYSPATISALEEVVHAVKGRVPILMDGGVRRGTDVFKALALGAQAVLIGRPVVYGLAAKGEYGVRRVIEMLKDEFELTMALTGCPSVKHI 427
            D S+SWKDLEW+R   + P++IKGIL  +DA  A+  G  GI+VSNHG RQLD   +T  AL  +V AV   + +L D G+R G DV + LALGA+ VL+GR + Y L A G+ GV  ++++   E  + M LTG  S++ I
Sbjct:  229 DPSISWKDLEWIREFWQGPMIIKGILDPQDARDALSFGADGIVVSNHGGRQLDGVLSTAKALPPIVQAVGSDLTVLADSGIRSGLDVVRMLALGAKGVLLGRSMAYALGADGQRGVENMLDIFAREMHVAMTLTGVTSIEQI 370          
BLAST of CX300041 vs. ExPASy Swiss-Prot
Match: LLDD_HAEIG (L-lactate dehydrogenase [cytochrome] OS=Haemophilus influenzae (strain PittGG) GN=lldD PE=3 SV=1)

HSP 1 Score: 132.494 bits (332), Expect = 1.371e-30
Identity = 66/142 (46.48%), Postives = 89/142 (62.68%), Query Frame = 2
Query:    2 DASLSWKDLEWLRSITKLPILIKGILTREDAIKAVEVGVAGIIVSNHGARQLDYSPATISALEEVVHAVKGRVPILMDGGVRRGTDVFKALALGAQAVLIGRPVVYGLAAKGEYGVRRVIEMLKDEFELTMALTGCPSVKHI 427
            D S+SWKDLEW+R   + P++IKGIL  EDA  AV  G  GI+VSNHG RQLD   ++  AL  +  AVKG + I+ D G+R G D+ + LALGA A ++GR  VY L A G  GV  ++++ K E  + M LT   ++  I
Sbjct:  229 DPSISWKDLEWIREFWEGPMVIKGILDPEDAKDAVRFGADGIVVSNHGGRQLDGVLSSARALPPIADAVKGDIKIIADSGIRNGLDIVRMLALGADATMLGRAFVYALGAAGRQGVENMLDIFKKEMHVAMTLTSNRTIADI 370          
BLAST of CX300041 vs. ExPASy Swiss-Prot
Match: LLDD_HAEIE (L-lactate dehydrogenase [cytochrome] OS=Haemophilus influenzae (strain PittEE) GN=lldD PE=3 SV=1)

HSP 1 Score: 132.494 bits (332), Expect = 1.371e-30
Identity = 66/142 (46.48%), Postives = 89/142 (62.68%), Query Frame = 2
Query:    2 DASLSWKDLEWLRSITKLPILIKGILTREDAIKAVEVGVAGIIVSNHGARQLDYSPATISALEEVVHAVKGRVPILMDGGVRRGTDVFKALALGAQAVLIGRPVVYGLAAKGEYGVRRVIEMLKDEFELTMALTGCPSVKHI 427
            D S+SWKDLEW+R   + P++IKGIL  EDA  AV  G  GI+VSNHG RQLD   ++  AL  +  AVKG + I+ D G+R G D+ + LALGA A ++GR  VY L A G  GV  ++++ K E  + M LT   ++  I
Sbjct:  229 DPSISWKDLEWIREFWEGPMVIKGILDPEDAKDAVRFGADGIVVSNHGGRQLDGVLSSARALPPIADAVKGDIKIIADSGIRNGLDIVRMLALGADATMLGRAFVYALGAAGRQGVENMLDIFKKEMRVAMTLTSNRTIADI 370          
BLAST of CX300041 vs. ExPASy Swiss-Prot
Match: LLDD_HAEI8 (L-lactate dehydrogenase [cytochrome] OS=Haemophilus influenzae (strain 86-028NP) GN=lldD PE=3 SV=1)

HSP 1 Score: 132.109 bits (331), Expect = 1.791e-30
Identity = 65/134 (48.51%), Postives = 86/134 (64.18%), Query Frame = 2
Query:    2 DASLSWKDLEWLRSITKLPILIKGILTREDAIKAVEVGVAGIIVSNHGARQLDYSPATISALEEVVHAVKGRVPILMDGGVRRGTDVFKALALGAQAVLIGRPVVYGLAAKGEYGVRRVIEMLKDEFELTMALT 403
            D S+SWKDLEW+R   + P++IKGIL  EDA  AV  G  GI+VSNHG RQLD   ++  AL  +  AVKG + I+ D G+R G D+ + LALGA A ++GR  VY L A G  GV  ++++ K E  + M LT
Sbjct:  229 DPSISWKDLEWIREFWEGPMVIKGILDPEDAKDAVRFGADGIVVSNHGGRQLDGVLSSARALPPIADAVKGDIKIIADSGIRNGLDIVRMLALGADATMLGRAFVYALGAAGRQGVENMLDIFKKEMRVAMTLT 362          
BLAST of CX300041 vs. ExPASy Swiss-Prot
Match: LA2M_MYCSM (Lactate 2-monooxygenase OS=Mycobacterium smegmatis PE=1 SV=3)

HSP 1 Score: 129.028 bits (323), Expect = 1.516e-29
Identity = 67/146 (45.89%), Postives = 94/146 (64.38%), Query Frame = 2
Query:    8 SLSWKDLEWLRSITKLPILIKGILTREDAIKAVEVGVAGIIVSNHGARQLDYSPATISALEEVVHAVKGRVPILMDGGVRRGTDVFKALALGAQAVLIGRPVVYGLAAKGEYGVRRVIEMLKDEFELTMALTGCPSVKHITRNHVR 445
            S++W+D++W+RSITK+P+++KGI   +DA +AV+ GV GI  SNHG RQ +     +  L EVV A  G  P+L D G+R G DV KALA+GA AV IGRP  +G A  G  G+  V   L  E +L MA+ G  ++K +T + +R
Sbjct:  247 SVTWEDIDWVRSITKMPVILKGIQHPDDARRAVDSGVDGIYCSNHGGRQANGGLPALDCLPEVVKA-SGDTPVLFDSGIRTGADVVKALAMGASAVGIGRPYAWGAALGGSKGIEHVARSLLAEADLIMAVDGYRNLKELTIDALR 391          
BLAST of CX300041 vs. ExPASy Swiss-Prot
Match: LLDD1_MYCTU (Putative L-lactate dehydrogenase [cytochrome] 1 OS=Mycobacterium tuberculosis GN=lldD1 PE=3 SV=2)

HSP 1 Score: 127.872 bits (320), Expect = 3.377e-29
Identity = 63/139 (45.32%), Postives = 96/139 (69.06%), Query Frame = 2
Query:   14 SWKDLEWLRSITKLPILIKGILTREDAIKAVEVGVAGIIVSNHGARQLDYSPATISALEEVVHAVKGRVPILMDGGVRRGTDVFKALALGAQAVLIGRPVVYGLAAKGEYGVRRVIEMLKDEFELTMALTGCPSVKHIT 430
            +W+D+ WLR +   P ++KG++  +DA +AV+ GV+ I VSNHG   LD +PA+I AL  V  AV  +V +L+DGG+RRG+DV KA+ALGA+AV+IGR  ++GLAA G+ GV  V+++L+   +  +   G  SV  ++
Sbjct:  236 TWEDIGWLRELWGGPFMLKGVMRVDDAKRAVDAGVSAISVSNHGGNNLDGTPASIRALPAVSAAVGDQVEVLLDGGIRRGSDVVKAVALGARAVMIGRAYLWGLAANGQAGVENVLDILRGGIDSALMGLGHASVHDLS 374          
BLAST of CX300041 vs. ExPASy Swiss-Prot
Match: LLDD2_MYCTU (Putative L-lactate dehydrogenase [cytochrome] 2 OS=Mycobacterium tuberculosis GN=lldD2 PE=3 SV=2)

HSP 1 Score: 115.931 bits (289), Expect = 1.328e-25
Identity = 62/147 (42.18%), Postives = 87/147 (59.18%), Query Frame = 2
Query:    2 DASLSWKDLEWLRSITKLPILIKGILTREDAIKAVEVGVAGIIVSNHGARQLDYSPATISALEEVVHAVKGRVPILMDGGVRRGTDVFKALALGAQAVLIGRPVVYGLAAKGEYGVRRVIEMLKDEFELTMALTGCPSVKHITRNHV 442
            D SL++ DL W++S     +++KGI T +DA   V+ GV GI++SNHG RQLD +P     L  V   +     IL+D G+  G D+  A+ALGA+  LIGR  +YGL A GE GV R IE+L+     TM L G   ++ ++  HV
Sbjct:  255 DPSLTFDDLAWIKSQWPGKLVVKGIQTLDDARAVVDRGVDGIVLSNHGGRQLDRAPVPFHLLPHVARELGKHTEILVDTGIMSGADIVAAIALGARCTLIGRAYLYGLMAGGEAGVNRAIEILQTGVIRTMRLLGVTCLEELSPRHV 401          
The following BLAST results are available for this feature:
BLAST of CX300041 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 127
Match NameE-valueIdentityDescription
LLDD_PSEU21.050e-3046.48L-lactate dehydrogenase [cytochrome] OS=Pseudomona... [more]
LLDD_HAEIG1.371e-3046.48L-lactate dehydrogenase [cytochrome] OS=Haemophilu... [more]
LLDD_HAEIE1.371e-3046.48L-lactate dehydrogenase [cytochrome] OS=Haemophilu... [more]
LLDD_HAEI81.791e-3048.51L-lactate dehydrogenase [cytochrome] OS=Haemophilu... [more]
LA2M_MYCSM1.516e-2945.89Lactate 2-monooxygenase OS=Mycobacterium smegmatis... [more]
LLDD1_MYCTU3.377e-2945.32Putative L-lactate dehydrogenase [cytochrome] 1 OS... [more]
LLDD2_MYCTU1.328e-2542.18Putative L-lactate dehydrogenase [cytochrome] 2 OS... [more]

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Properties
Property NameValue
Genbank descriptionC07005D07SK SaltLeaf1 Citrus clementina cDNA clone C07005D07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX300041 ID=CX300041; Name=CX300041; organism=Citrus clementina; type=EST; length=559bp
GGATGCTTCTTTAAGTTGGAAGGATTTAGAATGGCTAAGATCTATTACAA
AGTTACCAATTTTGATCAAGGGGATACTTACTCGTGAAGATGCAATAAAA
GCTGTGGAAGTAGGTGTTGCTGGGATTATTGTCTCCAATCACGGAGCTCG
ACAGTTAGATTATAGTCCTGCCACTATTTCTGCTCTGGAAGAGGTGGTTC
ATGCCGTTAAAGGAAGAGTTCCAATTCTTATGGATGGAGGAGTGCGGCGA
GGAACAGATGTTTTCAAGGCATTGGCCCTCGGTGCACAAGCTGTACTTAT
TGGAAGGCCTGTAGTCTACGGCCTTGCTGCAAAAGGGGAATATGGGGTGA
GACGCGTCATTGAAATGCTGAAGGATGAGTTTGAGTTGACCATGGCCCTT
ACTGGCTGTCCTAGTGTGAAACATATTACCAGGAACCATGTGAGAACTGA
GCATGAGAGAATCCATTCGATGCTGTAATATTATTTTCTGTTGCAGAAAT
GTCTAAATGTATGGATGAATTAAACCATGAGCAATCATTTAAACTAATTA
AATTTGAAG
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