CX300041

Overview
NameCX300041
Unique NameCX300041
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length559
Libraries
Library NameType
SaltLeaf1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX300041 vs. ExPASy Swiss-Prot
Match: LLDD_VIBCH (L-lactate dehydrogenase [cytochrome] OS=Vibrio cholerae GN=lldD PE=3 SV=1)

HSP 1 Score: 142.51 bits (358), Expect = 1.325e-33
Identity = 69/145 (47.59%), Postives = 95/145 (65.52%), Query Frame = 2
Query:    2 DASLSWKDLEWLRSITKLPILIKGILTREDAIKAVEVGVAGIIVSNHGARQLDYSPATISALEEVVHAVKGRVPILMDGGVRRGTDVFKALALGAQAVLIGRPVVYGLAAKGEYGVRRVIEMLKDEFELTMALTGCPSVKHITRN 436
            D S+SWKDLEW+R     P++IKGIL  EDA  AV  G  GI+VSNHG RQLD   +T+ AL  +  AVKG + IL+D G+R G DV + LALGA   ++GR  +Y LAA+G  GV  ++++ + E  + M LTG  S+  ++R+
Sbjct:  229 DPSISWKDLEWIRDFWDGPMIIKGILDTEDAKDAVRFGADGIVVSNHGGRQLDGVLSTVQALPAIADAVKGDLKILVDSGIRTGLDVVRMLALGADCTMLGRSFIYALAAQGRAGVENLLDLYEKEMRVAMTLTGAKSIAELSRD 373          
BLAST of CX300041 vs. ExPASy Swiss-Prot
Match: LLDD_PSEPG (L-lactate dehydrogenase [cytochrome] OS=Pseudomonas putida (strain GB-1) GN=lldD PE=3 SV=1)

HSP 1 Score: 142.51 bits (358), Expect = 1.325e-33
Identity = 72/150 (48.00%), Postives = 97/150 (64.67%), Query Frame = 2
Query:    2 DASLSWKDLEWLRSITKLPILIKGILTREDAIKAVEVGVAGIIVSNHGARQLDYSPATISALEEVVHAVKGRVPILMDGGVRRGTDVFKALALGAQAVLIGRPVVYGLAAKGEYGVRRVIEMLKDEFELTMALTGCPSVKHITRNHVRTE 451
            D S+SWKDLEW+R     P++IKGIL  +DA  AV+ G  GI+VSNHG RQLD   ++  AL  +  AVKG + IL D G+R G DV + +ALGA  VLIGR  +Y LA  G+ GV+ ++E+ + E  + M LTG  S+  ITR+ +  E
Sbjct:  229 DPSISWKDLEWIREYWDGPMIIKGILDADDARDAVKFGADGIVVSNHGGRQLDGVLSSARALPAIADAVKGDLKILADSGIRSGLDVVRMIALGADTVLIGRAFLYALAVHGQAGVKNLLELFEKEMRVAMVLTGAKSISEITRDSLVRE 378          
BLAST of CX300041 vs. ExPASy Swiss-Prot
Match: LLDD_PSEE4 (L-lactate dehydrogenase [cytochrome] OS=Pseudomonas entomophila (strain L48) GN=lldD PE=3 SV=1)

HSP 1 Score: 142.51 bits (358), Expect = 1.325e-33
Identity = 72/150 (48.00%), Postives = 96/150 (64.00%), Query Frame = 2
Query:    2 DASLSWKDLEWLRSITKLPILIKGILTREDAIKAVEVGVAGIIVSNHGARQLDYSPATISALEEVVHAVKGRVPILMDGGVRRGTDVFKALALGAQAVLIGRPVVYGLAAKGEYGVRRVIEMLKDEFELTMALTGCPSVKHITRNHVRTE 451
            D S+SWKDLEW+R     P++IKGIL  +DA  AV+ G  GI+VSNHG RQLD   ++  AL  +  AVKG + IL D G+R G DV + +ALGA  VLIGR  +Y LA  GE GV+ ++ + + E  + M LTG  S+  ITR+ +  E
Sbjct:  229 DPSISWKDLEWIREFWDGPMIIKGILDADDARDAVKFGADGIVVSNHGGRQLDGVLSSARALPAIADAVKGDIKILADSGIRSGLDVVRMIALGADTVLIGRAFLYALATHGEAGVKNLLALFEKEMRVAMVLTGAKSISEITRDSLVRE 378          
BLAST of CX300041 vs. ExPASy Swiss-Prot
Match: LLDD_CHRSD (L-lactate dehydrogenase [cytochrome] OS=Chromohalobacter salexigens (strain DSM 3043 / ATCC BAA-138 / NCIMB 13768) GN=lldD PE=3 SV=1)

HSP 1 Score: 142.124 bits (357), Expect = 1.730e-33
Identity = 70/142 (49.30%), Postives = 91/142 (64.08%), Query Frame = 2
Query:    2 DASLSWKDLEWLRSITKLPILIKGILTREDAIKAVEVGVAGIIVSNHGARQLDYSPATISALEEVVHAVKGRVPILMDGGVRRGTDVFKALALGAQAVLIGRPVVYGLAAKGEYGVRRVIEMLKDEFELTMALTGCPSVKHI 427
            D S+SWKDLEW+R     P++IKGIL  EDA  AV  G  GI+VSNHG RQLD  P+T  AL  +  AVKG + IL D GVR G DV + +A+GA  +L+GR  +Y LA  GE GV  ++E+ + E  + M LTG  S+  +
Sbjct:  229 DPSISWKDLEWIREFWDGPMIIKGILDPEDARDAVRFGADGIVVSNHGGRQLDGVPSTARALPAIADAVKGDLAILADSGVRNGLDVVRMIAMGADTILLGRAYIYALATAGEAGVAHLLELFEKEMRVAMTLTGARSIAEL 370          
BLAST of CX300041 vs. ExPASy Swiss-Prot
Match: LLDD_ENT38 (L-lactate dehydrogenase [cytochrome] OS=Enterobacter sp. (strain 638) GN=lldD PE=3 SV=1)

HSP 1 Score: 141.354 bits (355), Expect = 2.952e-33
Identity = 72/158 (45.57%), Postives = 101/158 (63.92%), Query Frame = 2
Query:    2 DASLSWKDLEWLRSITKLPILIKGILTREDAIKAVEVGVAGIIVSNHGARQLDYSPATISALEEVVHAVKGRVPILMDGGVRRGTDVFKALALGAQAVLIGRPVVYGLAAKGEYGVRRVIEMLKDEFELTMALTGCPSVKHITRNHVRTEHERIHSML 475
            D S+SWKDLEW+R     P++IKGIL  EDA  AV  G  GI+VSNHG RQLD   ++  AL  +  AVKG + IL D G+R G DV + +ALGA +VL+GR  +Y LA  G+ GV  ++ +++ E ++ M LTG  ++  I+++ +  E  RI S L
Sbjct:  229 DPSISWKDLEWIREFWDGPMVIKGILDPEDARDAVRFGADGIVVSNHGGRQLDGVLSSARALPAIADAVKGDIAILADSGIRNGLDVVRMIALGADSVLLGRAYLYALATHGQAGVANLLNLIEKEMKVAMTLTGAKTISEISKDSLVQELSRIPSGL 386          
BLAST of CX300041 vs. ExPASy Swiss-Prot
Match: LLDD_KLEP7 (L-lactate dehydrogenase [cytochrome] OS=Klebsiella pneumoniae subsp. pneumoniae (strain ATCC 700721 / MGH 78578) GN=lldD PE=3 SV=1)

HSP 1 Score: 140.969 bits (354), Expect = 3.855e-33
Identity = 70/156 (44.87%), Postives = 100/156 (64.10%), Query Frame = 2
Query:    2 DASLSWKDLEWLRSITKLPILIKGILTREDAIKAVEVGVAGIIVSNHGARQLDYSPATISALEEVVHAVKGRVPILMDGGVRRGTDVFKALALGAQAVLIGRPVVYGLAAKGEYGVRRVIEMLKDEFELTMALTGCPSVKHITRNHVRTEHERIHS 469
            D S+SWKDLEW+R     P++IKGIL  EDA  AV  G  GI+VSNHG RQLD   ++  AL  +  AVKG + IL D G+R G DV + +ALGA +VL+GR  +Y LA  G+ GV  ++ +++ E ++ M LTG  S++ I+R+ +    E + +
Sbjct:  229 DPSISWKDLEWIRDFWDGPMVIKGILDPEDARDAVRFGADGIVVSNHGGRQLDGVLSSARALPAIADAVKGDITILADSGIRNGLDVVRMIALGADSVLLGRAYLYALATHGKQGVANLLNLIEKEMKVAMTLTGAKSIREISRDSLVQNAEALQT 384          
BLAST of CX300041 vs. ExPASy Swiss-Prot
Match: LLDD_CITK8 (L-lactate dehydrogenase [cytochrome] OS=Citrobacter koseri (strain ATCC BAA-895 / CDC 4225-83 / SGSC4696) GN=lldD PE=3 SV=1)

HSP 1 Score: 140.969 bits (354), Expect = 3.855e-33
Identity = 70/150 (46.67%), Postives = 98/150 (65.33%), Query Frame = 2
Query:    2 DASLSWKDLEWLRSITKLPILIKGILTREDAIKAVEVGVAGIIVSNHGARQLDYSPATISALEEVVHAVKGRVPILMDGGVRRGTDVFKALALGAQAVLIGRPVVYGLAAKGEYGVRRVIEMLKDEFELTMALTGCPSVKHITRNHVRTE 451
            D S+SWKDLEW+R     P++IKGIL  EDA  AV  G  GI+VSNHG RQLD   ++  AL  +  AVKG + IL D G+R G DV + +ALGA +VL+GR  +Y LA  G+ GV  ++++++ E ++ M LTG  S+  I+R+ +  E
Sbjct:  229 DPSISWKDLEWIREFWDGPMVIKGILDPEDARDAVRFGADGIVVSNHGGRQLDGVLSSARALPAIADAVKGDIAILADSGIRNGLDVVRMIALGADSVLLGRAYLYALATAGQAGVANLLDLIEKEMKVAMTLTGAKSISEISRDSLVQE 378          
BLAST of CX300041 vs. ExPASy Swiss-Prot
Match: LLDD_STRM5 (L-lactate dehydrogenase [cytochrome] OS=Stenotrophomonas maltophilia (strain R551-3) GN=lldD PE=3 SV=1)

HSP 1 Score: 140.584 bits (353), Expect = 5.035e-33
Identity = 72/145 (49.66%), Postives = 95/145 (65.52%), Query Frame = 2
Query:    2 DASLSWKDLEWLRSITKLPILIKGILTREDAIKAVEVGVAGIIVSNHGARQLDYSPATISALEEVVHAVKGRVPILMDGGVRRGTDVFKALALGAQAVLIGRPVVYGLAAKGEYGVRRVIEMLKDEFELTMALTGCPSVKHITRN 436
            D S+SWKDLEW+R   K P++IKGIL  +DA  AV+ G  GI+VSNHG RQLD   +T  AL  +  AV+G + IL D G+R G DV + LALGA  VL+GR  VY LAA+GE GV  +++++  E  + M LTG   +  I R+
Sbjct:  229 DPSISWKDLEWIREFWKGPMVIKGILDPDDARDAVKFGADGIVVSNHGGRQLDGVLSTARALPAIADAVQGDLKILADSGIRTGLDVVRMLALGADTVLLGRAFVYALAAQGEAGVANLLDLIAKEMRVAMTLTGARRIADIGRD 373          
BLAST of CX300041 vs. ExPASy Swiss-Prot
Match: LLDD_ERWCT (L-lactate dehydrogenase [cytochrome] OS=Erwinia carotovora subsp. atroseptica GN=lldD PE=3 SV=1)

HSP 1 Score: 140.584 bits (353), Expect = 5.035e-33
Identity = 71/143 (49.65%), Postives = 93/143 (65.03%), Query Frame = 2
Query:    2 DASLSWKDLEWLRSITKLPILIKGILTREDAIKAVEVGVAGIIVSNHGARQLDYSPATISALEEVVHAVKGRVPILMDGGVRRGTDVFKALALGAQAVLIGRPVVYGLAAKGEYGVRRVIEMLKDEFELTMALTGCPSVKHIT 430
            D S+SW+DL W+R   K P++IKGIL  EDA +AV  G  GI+VSNHG RQLD   +T  AL  +  AVKG + IL D G+R G DV + +ALGA  V++GR  VY LAA GE GV  ++ +++ E  + M LTG  S+  IT
Sbjct:  229 DPSISWQDLAWIREFWKGPMIIKGILDPEDAKEAVRFGADGIVVSNHGGRQLDGVLSTAHALPAIADAVKGDITILADSGIRSGLDVVRMIALGADGVMLGRAFVYALAAAGEAGVVNLLNLIEKEMRVAMTLTGAKSIADIT 371          
BLAST of CX300041 vs. ExPASy Swiss-Prot
Match: LLDD_YERPY (L-lactate dehydrogenase [cytochrome] OS=Yersinia pseudotuberculosis serotype O:3 (strain YPIII) GN=lldD PE=3 SV=1)

HSP 1 Score: 140.198 bits (352), Expect = 6.575e-33
Identity = 71/145 (48.97%), Postives = 94/145 (64.83%), Query Frame = 2
Query:    2 DASLSWKDLEWLRSITKLPILIKGILTREDAIKAVEVGVAGIIVSNHGARQLDYSPATISALEEVVHAVKGRVPILMDGGVRRGTDVFKALALGAQAVLIGRPVVYGLAAKGEYGVRRVIEMLKDEFELTMALTGCPSVKHITRN 436
            D S+SWKDLEW+R   + P++IKGIL  EDA  AV+ G  GI+VSNHG RQLD   +T  AL  +  AVKG + IL D G+R G DV + +ALGA +VL+GR  VY LA  GE GV  ++ +++ E  + M LTG   +  I R+
Sbjct:  229 DPSISWKDLEWVREFWQGPMIIKGILDPEDAKDAVKFGADGIVVSNHGGRQLDGVLSTARALPAIADAVKGDITILADSGIRTGLDVVRMIALGADSVLLGRAFVYALATAGEAGVINLLTLIEQEMRVAMTLTGAKRIADINRD 373          
The following BLAST results are available for this feature:
BLAST of CX300041 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 127
Match NameE-valueIdentityDescription
LLDD_VIBCH1.325e-3347.59L-lactate dehydrogenase [cytochrome] OS=Vibrio cho... [more]
LLDD_PSEPG1.325e-3348.00L-lactate dehydrogenase [cytochrome] OS=Pseudomona... [more]
LLDD_PSEE41.325e-3348.00L-lactate dehydrogenase [cytochrome] OS=Pseudomona... [more]
LLDD_CHRSD1.730e-3349.30L-lactate dehydrogenase [cytochrome] OS=Chromohalo... [more]
LLDD_ENT382.952e-3345.57L-lactate dehydrogenase [cytochrome] OS=Enterobact... [more]
LLDD_KLEP73.855e-3344.87L-lactate dehydrogenase [cytochrome] OS=Klebsiella... [more]
LLDD_CITK83.855e-3346.67L-lactate dehydrogenase [cytochrome] OS=Citrobacte... [more]
LLDD_STRM55.035e-3349.66L-lactate dehydrogenase [cytochrome] OS=Stenotroph... [more]
LLDD_ERWCT5.035e-3349.65L-lactate dehydrogenase [cytochrome] OS=Erwinia ca... [more]
LLDD_YERPY6.575e-3348.97L-lactate dehydrogenase [cytochrome] OS=Yersinia p... [more]

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Properties
Property NameValue
Genbank descriptionC07005D07SK SaltLeaf1 Citrus clementina cDNA clone C07005D07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX300041 ID=CX300041; Name=CX300041; organism=Citrus clementina; type=EST; length=559bp
GGATGCTTCTTTAAGTTGGAAGGATTTAGAATGGCTAAGATCTATTACAA
AGTTACCAATTTTGATCAAGGGGATACTTACTCGTGAAGATGCAATAAAA
GCTGTGGAAGTAGGTGTTGCTGGGATTATTGTCTCCAATCACGGAGCTCG
ACAGTTAGATTATAGTCCTGCCACTATTTCTGCTCTGGAAGAGGTGGTTC
ATGCCGTTAAAGGAAGAGTTCCAATTCTTATGGATGGAGGAGTGCGGCGA
GGAACAGATGTTTTCAAGGCATTGGCCCTCGGTGCACAAGCTGTACTTAT
TGGAAGGCCTGTAGTCTACGGCCTTGCTGCAAAAGGGGAATATGGGGTGA
GACGCGTCATTGAAATGCTGAAGGATGAGTTTGAGTTGACCATGGCCCTT
ACTGGCTGTCCTAGTGTGAAACATATTACCAGGAACCATGTGAGAACTGA
GCATGAGAGAATCCATTCGATGCTGTAATATTATTTTCTGTTGCAGAAAT
GTCTAAATGTATGGATGAATTAAACCATGAGCAATCATTTAAACTAATTA
AATTTGAAG
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