CX300041

Overview
NameCX300041
Unique NameCX300041
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length559
Libraries
Library NameType
SaltLeaf1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX300041 vs. ExPASy Swiss-Prot
Match: LLDD_YERPS (L-lactate dehydrogenase [cytochrome] OS=Yersinia pseudotuberculosis GN=lldD PE=3 SV=1)

HSP 1 Score: 140.198 bits (352), Expect = 6.575e-33
Identity = 71/145 (48.97%), Postives = 94/145 (64.83%), Query Frame = 2
Query:    2 DASLSWKDLEWLRSITKLPILIKGILTREDAIKAVEVGVAGIIVSNHGARQLDYSPATISALEEVVHAVKGRVPILMDGGVRRGTDVFKALALGAQAVLIGRPVVYGLAAKGEYGVRRVIEMLKDEFELTMALTGCPSVKHITRN 436
            D S+SWKDLEW+R   + P++IKGIL  EDA  AV+ G  GI+VSNHG RQLD   +T  AL  +  AVKG + IL D G+R G DV + +ALGA +VL+GR  VY LA  GE GV  ++ +++ E  + M LTG   +  I R+
Sbjct:  229 DPSISWKDLEWVREFWQGPMIIKGILDPEDAKDAVKFGADGIVVSNHGGRQLDGVLSTARALPAIADAVKGDITILADSGIRTGLDVVRMIALGADSVLLGRAFVYALATAGEAGVINLLTLIEQEMRVAMTLTGAKRIADINRD 373          
BLAST of CX300041 vs. ExPASy Swiss-Prot
Match: LLDD_YERPP (L-lactate dehydrogenase [cytochrome] OS=Yersinia pestis (strain Pestoides F) GN=lldD PE=3 SV=1)

HSP 1 Score: 140.198 bits (352), Expect = 6.575e-33
Identity = 71/145 (48.97%), Postives = 94/145 (64.83%), Query Frame = 2
Query:    2 DASLSWKDLEWLRSITKLPILIKGILTREDAIKAVEVGVAGIIVSNHGARQLDYSPATISALEEVVHAVKGRVPILMDGGVRRGTDVFKALALGAQAVLIGRPVVYGLAAKGEYGVRRVIEMLKDEFELTMALTGCPSVKHITRN 436
            D S+SWKDLEW+R   + P++IKGIL  EDA  AV+ G  GI+VSNHG RQLD   +T  AL  +  AVKG + IL D G+R G DV + +ALGA +VL+GR  VY LA  GE GV  ++ +++ E  + M LTG   +  I R+
Sbjct:  229 DPSISWKDLEWVREFWQGPMIIKGILDPEDAKDAVKFGADGIVVSNHGGRQLDGVLSTARALPAIADAVKGDITILADSGIRTGLDVVRMIALGADSVLLGRAFVYALATAGEAGVINLLTLIEQEMRVAMTLTGAKRIADINRD 373          
BLAST of CX300041 vs. ExPASy Swiss-Prot
Match: LLDD_YERPN (L-lactate dehydrogenase [cytochrome] OS=Yersinia pestis bv. Antiqua (strain Nepal516) GN=lldD PE=3 SV=1)

HSP 1 Score: 140.198 bits (352), Expect = 6.575e-33
Identity = 71/145 (48.97%), Postives = 94/145 (64.83%), Query Frame = 2
Query:    2 DASLSWKDLEWLRSITKLPILIKGILTREDAIKAVEVGVAGIIVSNHGARQLDYSPATISALEEVVHAVKGRVPILMDGGVRRGTDVFKALALGAQAVLIGRPVVYGLAAKGEYGVRRVIEMLKDEFELTMALTGCPSVKHITRN 436
            D S+SWKDLEW+R   + P++IKGIL  EDA  AV+ G  GI+VSNHG RQLD   +T  AL  +  AVKG + IL D G+R G DV + +ALGA +VL+GR  VY LA  GE GV  ++ +++ E  + M LTG   +  I R+
Sbjct:  229 DPSISWKDLEWVREFWQGPMIIKGILDPEDAKDAVKFGADGIVVSNHGGRQLDGVLSTARALPAIADAVKGDITILADSGIRTGLDVVRMIALGADSVLLGRAFVYALATAGEAGVINLLTLIEQEMRVAMTLTGAKRIADINRD 373          
BLAST of CX300041 vs. ExPASy Swiss-Prot
Match: LLDD_YERPG (L-lactate dehydrogenase [cytochrome] OS=Yersinia pestis bv. Antiqua (strain Angola) GN=lldD PE=3 SV=1)

HSP 1 Score: 140.198 bits (352), Expect = 6.575e-33
Identity = 71/145 (48.97%), Postives = 94/145 (64.83%), Query Frame = 2
Query:    2 DASLSWKDLEWLRSITKLPILIKGILTREDAIKAVEVGVAGIIVSNHGARQLDYSPATISALEEVVHAVKGRVPILMDGGVRRGTDVFKALALGAQAVLIGRPVVYGLAAKGEYGVRRVIEMLKDEFELTMALTGCPSVKHITRN 436
            D S+SWKDLEW+R   + P++IKGIL  EDA  AV+ G  GI+VSNHG RQLD   +T  AL  +  AVKG + IL D G+R G DV + +ALGA +VL+GR  VY LA  GE GV  ++ +++ E  + M LTG   +  I R+
Sbjct:  229 DPSISWKDLEWVREFWQGPMIIKGILDPEDAKDAVKFGADGIVVSNHGGRQLDGVLSTARALPAIADAVKGDITILADSGIRTGLDVVRMIALGADSVLLGRAFVYALATAGEAGVINLLTLIEQEMRVAMTLTGAKRIADINRD 373          
BLAST of CX300041 vs. ExPASy Swiss-Prot
Match: LLDD_YERPE (L-lactate dehydrogenase [cytochrome] OS=Yersinia pestis GN=lldD PE=3 SV=1)

HSP 1 Score: 140.198 bits (352), Expect = 6.575e-33
Identity = 71/145 (48.97%), Postives = 94/145 (64.83%), Query Frame = 2
Query:    2 DASLSWKDLEWLRSITKLPILIKGILTREDAIKAVEVGVAGIIVSNHGARQLDYSPATISALEEVVHAVKGRVPILMDGGVRRGTDVFKALALGAQAVLIGRPVVYGLAAKGEYGVRRVIEMLKDEFELTMALTGCPSVKHITRN 436
            D S+SWKDLEW+R   + P++IKGIL  EDA  AV+ G  GI+VSNHG RQLD   +T  AL  +  AVKG + IL D G+R G DV + +ALGA +VL+GR  VY LA  GE GV  ++ +++ E  + M LTG   +  I R+
Sbjct:  229 DPSISWKDLEWVREFWQGPMIIKGILDPEDAKDAVKFGADGIVVSNHGGRQLDGVLSTARALPAIADAVKGDITILADSGIRTGLDVVRMIALGADSVLLGRAFVYALATAGEAGVINLLTLIEQEMRVAMTLTGAKRIADINRD 373          
BLAST of CX300041 vs. ExPASy Swiss-Prot
Match: LLDD_YERPB (L-lactate dehydrogenase [cytochrome] OS=Yersinia pseudotuberculosis serotype IB (strain PB1/+) GN=lldD PE=3 SV=1)

HSP 1 Score: 140.198 bits (352), Expect = 6.575e-33
Identity = 71/145 (48.97%), Postives = 94/145 (64.83%), Query Frame = 2
Query:    2 DASLSWKDLEWLRSITKLPILIKGILTREDAIKAVEVGVAGIIVSNHGARQLDYSPATISALEEVVHAVKGRVPILMDGGVRRGTDVFKALALGAQAVLIGRPVVYGLAAKGEYGVRRVIEMLKDEFELTMALTGCPSVKHITRN 436
            D S+SWKDLEW+R   + P++IKGIL  EDA  AV+ G  GI+VSNHG RQLD   +T  AL  +  AVKG + IL D G+R G DV + +ALGA +VL+GR  VY LA  GE GV  ++ +++ E  + M LTG   +  I R+
Sbjct:  229 DPSISWKDLEWVREFWQGPMIIKGILDPEDAKDAVKFGADGIVVSNHGGRQLDGVLSTARALPAIADAVKGDITILADSGIRTGLDVVRMIALGADSVLLGRAFVYALATAGEAGVINLLTLIEQEMRVAMTLTGAKRIADINRD 373          
BLAST of CX300041 vs. ExPASy Swiss-Prot
Match: LLDD_YERPA (L-lactate dehydrogenase [cytochrome] OS=Yersinia pestis bv. Antiqua (strain Antiqua) GN=lldD PE=3 SV=1)

HSP 1 Score: 140.198 bits (352), Expect = 6.575e-33
Identity = 71/145 (48.97%), Postives = 94/145 (64.83%), Query Frame = 2
Query:    2 DASLSWKDLEWLRSITKLPILIKGILTREDAIKAVEVGVAGIIVSNHGARQLDYSPATISALEEVVHAVKGRVPILMDGGVRRGTDVFKALALGAQAVLIGRPVVYGLAAKGEYGVRRVIEMLKDEFELTMALTGCPSVKHITRN 436
            D S+SWKDLEW+R   + P++IKGIL  EDA  AV+ G  GI+VSNHG RQLD   +T  AL  +  AVKG + IL D G+R G DV + +ALGA +VL+GR  VY LA  GE GV  ++ +++ E  + M LTG   +  I R+
Sbjct:  229 DPSISWKDLEWVREFWQGPMIIKGILDPEDAKDAVKFGADGIVVSNHGGRQLDGVLSTARALPAIADAVKGDITILADSGIRTGLDVVRMIALGADSVLLGRAFVYALATAGEAGVINLLTLIEQEMRVAMTLTGAKRIADINRD 373          
BLAST of CX300041 vs. ExPASy Swiss-Prot
Match: LLDD_YERP3 (L-lactate dehydrogenase [cytochrome] OS=Yersinia pseudotuberculosis serotype O:1b (strain IP 31758) GN=lldD PE=3 SV=1)

HSP 1 Score: 140.198 bits (352), Expect = 6.575e-33
Identity = 71/145 (48.97%), Postives = 94/145 (64.83%), Query Frame = 2
Query:    2 DASLSWKDLEWLRSITKLPILIKGILTREDAIKAVEVGVAGIIVSNHGARQLDYSPATISALEEVVHAVKGRVPILMDGGVRRGTDVFKALALGAQAVLIGRPVVYGLAAKGEYGVRRVIEMLKDEFELTMALTGCPSVKHITRN 436
            D S+SWKDLEW+R   + P++IKGIL  EDA  AV+ G  GI+VSNHG RQLD   +T  AL  +  AVKG + IL D G+R G DV + +ALGA +VL+GR  VY LA  GE GV  ++ +++ E  + M LTG   +  I R+
Sbjct:  229 DPSISWKDLEWVREFWQGPMIIKGILDPEDAKDAVKFGADGIVVSNHGGRQLDGVLSTARALPAIADAVKGDITILADSGIRTGLDVVRMIALGADSVLLGRAFVYALATAGEAGVINLLTLIEQEMRVAMTLTGAKRIADINRD 373          
BLAST of CX300041 vs. ExPASy Swiss-Prot
Match: LLDD_STRMK (L-lactate dehydrogenase [cytochrome] OS=Stenotrophomonas maltophilia (strain K279a) GN=lldD PE=3 SV=1)

HSP 1 Score: 140.198 bits (352), Expect = 6.575e-33
Identity = 72/145 (49.66%), Postives = 94/145 (64.83%), Query Frame = 2
Query:    2 DASLSWKDLEWLRSITKLPILIKGILTREDAIKAVEVGVAGIIVSNHGARQLDYSPATISALEEVVHAVKGRVPILMDGGVRRGTDVFKALALGAQAVLIGRPVVYGLAAKGEYGVRRVIEMLKDEFELTMALTGCPSVKHITRN 436
            D S+SWKDLEW+R   K P++IKGIL  +DA  AV  G  GI+VSNHG RQLD   +T  AL  +  AV+G + IL D G+R G DV + LALGA  VL+GR  VY LAA+GE GV  +++++  E  + M LTG   +  I R+
Sbjct:  229 DPSISWKDLEWIREFWKGPMVIKGILDPDDARDAVRFGADGIVVSNHGGRQLDGVLSTARALPAIADAVQGDLKILADSGIRTGLDVVRMLALGADTVLLGRAFVYALAAQGEAGVANLLDLIAKEMRVAMTLTGARRIADIGRD 373          
BLAST of CX300041 vs. ExPASy Swiss-Prot
Match: LLDD_BARHE (L-lactate dehydrogenase [cytochrome] OS=Bartonella henselae GN=lldD PE=3 SV=1)

HSP 1 Score: 140.198 bits (352), Expect = 6.575e-33
Identity = 70/144 (48.61%), Postives = 95/144 (65.97%), Query Frame = 2
Query:    2 DASLSWKDLEWLRSITKLPILIKGILTREDAIKAVEVGVAGIIVSNHGARQLDYSPATISALEEVVHAVKGRVPILMDGGVRRGTDVFKALALGAQAVLIGRPVVYGLAAKGEYGVRRVIEMLKDEFELTMALTGCPSVKHITR 433
            D S+ W DL+W+R   K  +++KGIL  EDA +A++ G  GI+VSNHG RQLD   +T+ AL  +  AVK  + IL+D GVR G DV + +A GA AV+IGR  VY LAA GE GV  +I++  +E  + M LTG  ++K ITR
Sbjct:  229 DPSIGWHDLQWIRDFWKGKMILKGILDPEDAREAIQFGADGIVVSNHGGRQLDGVLSTVRALPAIAEAVKSDLTILVDSGVRSGLDVVRMIAQGADAVMIGRAFVYALAAAGEKGVAHLIDLFANEMRVAMTLTGVRAIKEITR 372          
The following BLAST results are available for this feature:
BLAST of CX300041 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 127
Match NameE-valueIdentityDescription
LLDD_YERPS6.575e-3348.97L-lactate dehydrogenase [cytochrome] OS=Yersinia p... [more]
LLDD_YERPP6.575e-3348.97L-lactate dehydrogenase [cytochrome] OS=Yersinia p... [more]
LLDD_YERPN6.575e-3348.97L-lactate dehydrogenase [cytochrome] OS=Yersinia p... [more]
LLDD_YERPG6.575e-3348.97L-lactate dehydrogenase [cytochrome] OS=Yersinia p... [more]
LLDD_YERPE6.575e-3348.97L-lactate dehydrogenase [cytochrome] OS=Yersinia p... [more]
LLDD_YERPB6.575e-3348.97L-lactate dehydrogenase [cytochrome] OS=Yersinia p... [more]
LLDD_YERPA6.575e-3348.97L-lactate dehydrogenase [cytochrome] OS=Yersinia p... [more]
LLDD_YERP36.575e-3348.97L-lactate dehydrogenase [cytochrome] OS=Yersinia p... [more]
LLDD_STRMK6.575e-3349.66L-lactate dehydrogenase [cytochrome] OS=Stenotroph... [more]
LLDD_BARHE6.575e-3348.61L-lactate dehydrogenase [cytochrome] OS=Bartonella... [more]

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Properties
Property NameValue
Genbank descriptionC07005D07SK SaltLeaf1 Citrus clementina cDNA clone C07005D07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX300041 ID=CX300041; Name=CX300041; organism=Citrus clementina; type=EST; length=559bp
GGATGCTTCTTTAAGTTGGAAGGATTTAGAATGGCTAAGATCTATTACAA
AGTTACCAATTTTGATCAAGGGGATACTTACTCGTGAAGATGCAATAAAA
GCTGTGGAAGTAGGTGTTGCTGGGATTATTGTCTCCAATCACGGAGCTCG
ACAGTTAGATTATAGTCCTGCCACTATTTCTGCTCTGGAAGAGGTGGTTC
ATGCCGTTAAAGGAAGAGTTCCAATTCTTATGGATGGAGGAGTGCGGCGA
GGAACAGATGTTTTCAAGGCATTGGCCCTCGGTGCACAAGCTGTACTTAT
TGGAAGGCCTGTAGTCTACGGCCTTGCTGCAAAAGGGGAATATGGGGTGA
GACGCGTCATTGAAATGCTGAAGGATGAGTTTGAGTTGACCATGGCCCTT
ACTGGCTGTCCTAGTGTGAAACATATTACCAGGAACCATGTGAGAACTGA
GCATGAGAGAATCCATTCGATGCTGTAATATTATTTTCTGTTGCAGAAAT
GTCTAAATGTATGGATGAATTAAACCATGAGCAATCATTTAAACTAATTA
AATTTGAAG
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